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J. Biol. Chem., Vol. 281, Issue 30, 21250-21255, July 28, 2006
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From the Department of Anesthesiology and Neuroscience, University of Virginia, Charlottesville, Virginia 22908
Received for publication, January 18, 2006 , and in revised form, May 22, 2006.
| ABSTRACT |
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| INTRODUCTION |
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Regulatory factor X (RFX) proteins are transcription factors that bind X-boxes of DNA sequences with a conserved 76-residue DNA binding domain in their molecules (6). There are five RFXs (RFX1-5) in the human. RFX1 is a prototypic mammalian RFX that contains 979 amino acids and was initially thought to interact with the X-box in the class II major histocompatibility complex gene (6, 7). However, its role in the regulation of major histocompatibility complex expression has not been proven yet. Since the knockout of the RFX homologue in Caenorhabditis elegans results in severe sensory defects (8), it has been proposed that mammalian RFXs may play an important role in the nervous system. However, up until now, there is no report documenting the expression regulation of a neuronally expressed gene by RFXs in the mammalian nervous cells.
It has been shown that multiple agents, such as volatile anesthetics, cause acute changes of EAAT activity (9, 10). In EAAT3, this acute change of activity is mediated by the redistribution of EAAT3 from intracellular compartments to the plasma membrane, the functional site of EAAT3 (9). In contrast, very few studies have investigated the regulation of EAAT expression. There is no study on regulating the promoter activity of EAAT3 yet. By analyzing the sequences of the promoter regions for human EAAT1, EAAT2, and EAAT3, we found that only the EAAT3 promoter region contains a consensus binding sequence for RFX1. Thus, we hypothesize that RFX1 can specifically regulate the expression of EAAT3.
| EXPERIMENTAL PROCEDURES |
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Cerebral cortical neurons in culture were prepared from fetuses of 16-18-day gestation Sprague-Dawley rats as we described before (11). They were maintained in Dulbecco's modified Eagle's medium containing 25 mM HEPES, 10% Ham's F12 medium, 10% heat-inactivated fetal calf serum, 100 µg/ml streptomycin, and 100 units/ml penicillin (Invitrogen). The cultures were treated with 10 µg/ml cytosine-
-D-arabino-furanoside for 24 h to stop non-neuronal cell proliferation on days 4 and 5. Subsequent feeding was with the above described medium but without Ham's F-12 to eliminate glutamate from feeding.
Treatment of Neuronal Cultures with OligonucleotidesAfter the cells were in culture for 7-9 days, rat cerebral cortical neurons were treated with 5 µM RFX1 antisense or sense oligonucleotides for 96 h. The sequences of RFX1 antisense and sense oligonucleotides were from a previous publication (12): 5'-ggtcagctggaggg-3' (antisense) and 5'-ccctccagctgacc-3' (sense). The oligonucleotides were phosphorothioate derivatives to prolong their half-lives.
Plasmid ConstructionRFX1 plasmid (pRFX1) containing the coding region for human RFX1 protein in pCMV vector was provided by Dr. Patrick Hearing (State University of New York at Stony Brook, Stony Brook, NY). EAAT3-Luc plasmid was constructed by inserting the human EAAT3 promoter region (from -1 to -482) including the putative RFX1 binding sequence, 5'-gggtggcggcggcaacggc-3', into the pGL3-Luc vector (Promega Corp., Madison, WI) using the enzymes KpnI-BIgII. The construct was then confirmed by DNA sequencing.
Luciferase Activity AssayAfter being plated on 12-well plates (Corning Inc., New York, NY) for 20-24 h, C6 cells or SH-SY5Y cells at 50-70% confluence were transiently transfected with the EAAT3-Luc plasmid (0.5 µg/well) in the presence or absence of various amounts of pRFX1. The Renilla-luciferase expression vector (pRL/cytomegalovirus, 0.1 µg/well) also was co-transfected as an internal control. The amount of control cytomegalovirus plasmid DNA in the transfection mixture was adjusted to maintain that the total amount of DNA used was at 1 µg/well. At 24 h after the transfection, luciferase and Renilla-luciferase activities in the cells were measured using the Dual-Luciferase reporter assay system as described before (13). Luciferase activity was normalized to Renilla-luciferase activity. Each experiment was performed in triplicate for each condition and was repeated at least three times.
Gel Mobility Shift AssayNuclear extracts were prepared from C6 cells at 24 h after being transfected with or without pRFX1 using a nuclear extraction kit from Panomics, Inc. (Redwood City, CA). Equal amounts (6 µg)of extracts were incubated with biotin-labeled double-stranded oligonucleotides (the probe) in the presence or absence of unlabeled probe (cold probe), mutated cold probe, or an anti-RFX1 antibody (0.1 µl) in 15 µl of reaction mixture from the electrophoretic mobility shift assay gel-shift kits (Panomics, Inc., Redwood City, CA) for 30 min at 16 °C, according to the manufacturer's instructions. The sense sequence of the probe and the cold probe is 5'-gggtggcggcggcaacggc-3', which is the RFX1 binding sequence. The mutated cold probe is 5'-gggtgtcgggccgtagccgcc-3' (the bases that are different from those in the RFX1 binding sequence are bolded). After the incubation, the products were separated in 6% native polyacrylamide gels. The binding of the probe to DNA or to DNA and protein complexes was visualized by the chemiluminescence method.
AntibodiesThe rabbit polyclonal anti-RFX1 antibody (SB269-4) was a gift from Dr. P. Hearing and was used at a 1:5000 dilution. The rabbit anti-EAAT2 (GLT11-A) and EAAT3 (EAAC11-A) polyclonal antibody were from Alpha Diagnostic International, Inc. (San Antonio, TX) and were used at a 1:1000 dilution. The rabbit polyclonal anti-
-actin (A-2066) was purchased from Sigma and was used at a 1:5000 dilution.
Western BlottingEqual amounts of whole cell extracts were separated on sodium dodecyl sulfate polyacrylamide gels and transferred to polyvinylidene difluoride membranes (Bio-Rad). The blots were probed with the primary antibodies and then with the horseradish peroxide-conjugated secondary antibodies (Santa Cruz Biotechnology, Santa Cruz, CA). Protein bands were detected using the enhanced chemiluminescence detection system (Amersham Biosciences, Buckinghamshire, UK).
Glutamate Uptake AssayC6 cells were transfected with pRFX1 (1.5 µg/well) in 12-well plates and incubated at 37 °C for 24 h. The glutamate uptake assay was performed as we described before (9). After being washed twice by wash buffer containing 10 mM HEPES, 140 mM NaCl (replaced by 140 mM choline chloride in sodium depletion experiments), 5 mM Trisbase, 2.5 mM KCl, 2.5 mM CaCl2, 1.2 mM K2HPO4, and 10 mM dextrose, PH 7.2, the cells were incubated with 10 µM L-[3H]glutamate in the wash buffer for 5 min at 37 °C. The reaction was terminated by removing the incubation buffer and washing the cells three times with ice-cold wash buffer. The cells were lysed with 0.2 M NaOH (or KOH in sodium depletion experiments), and radioactivity was measured in a liquid scintillation counter.
Reverse Transcription-PCRTotal RNA was prepared from NRK-52E or C6 cells using the TRIzol reagent (Invitrogen). Complementary DNAs were synthesized from 5 µg of total RNA using the SuperScript preamplification system (Invitrogen). Amplification by PCR involved a 94 °C, 4-min initial denaturation step followed by 30 cycles at 94 °C for 30 s, at 55 °C for 30s, and at 72 °C for 45 s. The sequences of the paired primers were as follows: EAAT1, 5'-atgacaaaaagcaacggagaagag-3' and 5'-aatcattgtcatcatcatccaccc-3' (corresponding to positions 1-24 and 417-440 of EAAT1, respectively); EAAT2, 5'-cgaggtgtccagcctggatgccttcc-3' and 5'-aagtggttgctaggcagc-3' (corresponding to positions 578-603 and 1015-1033 of EAAT2, respectively); EAAT3, 5'-egggatccaatggggaagcccacgagctc-3' and 5'-cactcagacctcgcagttctcccaaactt-3' (corresponding to positions 1-20 and 1550-1570 of EAAT3, respectively). PCR products were resolved on 1% agarose gels and visualized by ethidium bromide and UV transillumination.
ImmunohistochemistryAs we described before (14), after being perfused with 100 ml of normal saline, adult Sprague-Dawley male rats were perfused transcardially with 100 ml of phosphate-buffered paraformaldehyde. Brains were removed and stored in the fixative for 2 days at 4 °C. Five-micrometer-thick coronal paraffin sections were cut for immunohistochemistry with the anti-RFX1 antibody. Immunoreactivity was visualized with an avidin-biotinylated horseradish peroxidase reaction with an ABC staining system from Vector Laboratories, Inc. (Burlingame, CA). Control incubations leaving out the primary or secondary antibodies were also performed.
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-actin to control for errors in protein sample loading and transferring during the Western analysis when total cell lysates were used for analysis. The results of Western blotting are presented as means ± S.D. of the -fold change over the controls, with control being set as 1. The results of luciferase activity assays are means ± S.D. of the ratios of luciferase activity/Renilla-luciferase activity in the same sample. The data of glutamate uptake assay are means ± S.D. of the measured values in each sample. Statistical analysis was performed by unpaired t test or one-way analysis of variance followed by the Student-Newman-Keuls test for post hoc comparison as appropriate. A p < 0.05 was considered significant. | RESULTS |
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To determine whether the increased EAAT3 expression and activity by RFX1 was due to the modification of EAAT3 promoter activity, we first investigated whether there was a RFX1 DNA binding complex in C6 cells. In the nuclear extracts from C6 cells, the intensity of a supershifted band was increased with the transfection of pRFX1. This supershifted band detected by the RFX1 probe was abolished by a 33-fold excess of cold probe but was not affected by a mutated cold probe with a 5-base change in the sequence. The band was further supershifted by the incubation of the nuclear extracts with an anti-RFX1 antibody (Fig. 4). These results suggest that there are complexes that can bind to RFX1 in the nuclear extracts of C6 cells. We then studied whether RFX1 proteins modified the EAAT3 promoter activity. When C6 cells were transfected with pRFX1, the expression of the reporter gene luciferase was increased in a dose-dependent manner (Fig. 5). These results suggest that the activity of EAAT3 promoter is increased by RFX1 proteins. Since a previous study showed that RFX1 and RFX3 decreased the promoter activity of microtubule-associated protein 1A gene in non-neuronal cells but not in neuron-like cells (17), we repeated our experiments in SH-SY5Y cells, a well established neuron-like cell line. The transfection of these cells with pRFX1 also induced a dose-dependent increase of luciferase expression (Fig. 5).
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| DISCUSSION |
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chain and proliferating cell nuclear antigen (18, 19). Mutations in the DNA binding domain of RFX5 cause bare lymphocyte syndrome or major histocompatibility complex antigen class II deficiency (8). RFX1, the prototypic mammalian RFX, has been shown to act as a potent transactivator of enhancer I for the hepatitis B virus major surface antigen gene in cells that are of liver origin (20). However, the physiological significance of RFX1-3 in the mammalian cells is not yet clear. It has been shown that X-box sequences for RFX1, RFX2, and RFX3 are very similar to that for DAF-19 and are different from those for RFX4 and RFX5 (8, 21). DAF-19 is the RFX homologue in C. elegans, and knockout of the daf-19 gene results in severe sensory defects (8). Thus, RFX1-3 may play a role in the mammalian central nervous system. However, up until now, there is no report documenting the effects of these RFXs on gene expression in cells of central nervous system origin. Based on the results generated from cell lines of different origins, it was concluded that RFX1 and RFX3 inhibited the expression of microtubule-associated protein 1A in cells of non-central nervous system origin, such as HeLa cells, but not in cells of central nervous system origin, such as TGW and Neruo2A cells (17). We showed that RFX1 enhanced the activity of EAAT3 promoter in C6 and SH-SY5Y cells and the expression of EAAT3 proteins in C6 cells. C6 and SH-SY5Y cells are of central nervous system origin, and SH-SY5Y cells are neuron-like cells. Moreover, neurons in rat brain expressed RFX1 proteins, and knockdown of RFX1 proteins decreased EAAT3 expression in the rat cortical neurons in culture. Thus, our results provide initial evidence that RFX1 regulates gene expression in the nervous cells.
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chain (18, 20). However, negatively acting regulatory elements of the X-box after binding to RFXs have been shown in the promoters for genes, such as proliferating cell nuclear antigen and microtubule-associated protein 1A (17, 19). Thus, the functional change of a promoter by RFXs is context-dependent. The mechanisms for this phenomenon are not clear. Various interactions among different functional domains in the RFX proteins and other regulatory factors recruited during the process may contribute to the development of this phenomenon.
Our findings may have significant physiological implications. EAATs, through their functions of uptaking glutamate under physiological conditions, maintain extracellular glutamate homeostasis (1). Inhibition of EAAT activity in brain slices or cell cultures increased the peak glutamate concentration in the synaptic cleft and prolonged the glutamate-induced current, leading to a slowed excitatory postsynaptic current decay at some synapses (3-5). In a recent study, inhibition of neuronal EAATs, i.e. EAAT3, in hippocampal slices decreased the inhibitory neurotransmitter
-aminobutyric acid (GABA)-mediated inhibitory postsynaptic current and miniature inhibitory postsynaptic current due to a reduction of GABA synthesis because glutamate uptaken by neuronal EAATs is a substrate for GABA synthesis (22). These results are consistent with the data from an early study showing that antisense knockdown of EAAT3 induced epilepsy in rats and that the hippocampal slices from these rats had a decrease in GABA synthesis, total GABA levels, and miniature inhibitory postsynaptic current (23). Thus, EAAT3 plays a role in maintaining the balance of glutamate/GABA neurotransmission. Consequently, factors, such as RFX1, which can regulate EAAT3 expression and activity, may have important physiological functions.
| FOOTNOTES |
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1 To whom correspondence should be addressed: Dept. of Anesthesiology, University of Virginia Health System, P. O. Box 800710, Charlottesville, VA 22908-0710. Tel.: 434-924-9507; Fax: 434-982-0019; E-mail: zz3c{at}virginia.edu.
2 The abbreviations used are: EAAT, excitatory amino acid transporters; GABA,
-aminobutyric acid; RFX, regulatory factor X. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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