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J. Biol. Chem., Vol. 281, Issue 33, 23377-23385, August 18, 2006
The N-terminal Ricin Propeptide Influences the Fate of Ricin A-chain in Tobacco Protoplasts* 1 1![]() ![]() ![]() ![]() 2
From the
Received for publication, March 22, 2006 , and in revised form, June 13, 2006.
The plant toxin ricin is synthesized in castor bean seeds as an endoplasmic reticulum (ER)-targeted precursor. Removal of the signal peptide generates proricin in which the mature A- and B-chains are joined by an intervening propeptide and a 9-residue propeptide persists at the N terminus. The two propeptides are ultimately removed in protein storage vacuoles, where ricin accumulates. Here we have demonstrated that the N-terminal propeptide of proricin acts as a nonspecific spacer to ensure efficient ER import and glycosylation. Indeed, when absent from the N terminus of ricin A-chain, the non-imported material remained tethered to the cytosolic face of the ER membrane, presumably by the signal peptide. This species appeared toxic to ribosomes. The propeptide does not, however, influence catalytic activity per se or the vacuolar targeting of proricin or the rate of retrotranslocation/degradation of A-chain in the cytosol. The likely implications of these findings to the survival of the toxin-producing tissue are discussed.
Ricin is a heterodimeric protein produced in the seeds of the castor oil plant Ricinus communis where it accumulates in the protein storage vacuoles (PSV)3 of endosperm cells. Mature ricin consists of a ribosome-inactivating A-chain (RTA) linked by a disulfide bond and non-covalent interactions to a galactose binding B-chain (RTB). This heterodimer is toxic to mammalian cells because it can bind via RTB to a variety of galactosylated cell surface molecules and, following retrograde transport to the endoplasmic reticulum (ER) and delivery of RTA to the cytosol, irreversibly inactivate ribosomes. RTA is a potent N-glycosidase that depurinates 28 S/25 S/26 S ribosomal RNA (1, 2) at a site in the ribosome that is critical for binding elongation factor-2 ternary complexes (3, 4). This leads to a halt in protein synthesis and, ultimately, cell death.
Although the ribosomes of Ricinus endosperm cells are susceptible to RTA-mediated depurination (5), intoxication of the producing tissue is avoided. Co-translational ER import is accompanied by N-glycosylation (6), disulfide bond formation (7), and proteolytic cleavage of the signal peptide (8), the first 26 residues of a 35-residue presequence at the N terminus of preproricin (9) (Fig. 1). Imported proricin consists of a 9-residue N-terminal propeptide, the mature RTA sequence, a 12-residue linker propeptide, and RTB. This precursor is catalytically inactive (10) because the RTB moiety sterically obstructs the substrate binding site of RTA, as it does in mature ricin heterodimers. In this form, proricin is delivered to PSV, and the mature RTA-RTB heterodimer is generated by the endoproteolytic removal of both the N-terminal and internal propeptides (7, 1114). Ricin holotoxin accumulates within the confines of the endosperm vacuoles to 5% of the total particulate protein (15, 16). The ricin precursor and its constituent subunits have been well studied in the heterologous system of tobacco protoplasts (1720). Although it is clear that the 26-residue signal peptide mediates ER import and that the 12-residue linker propeptide is essential for vacuolar targeting (21), the role of the 9-residue N-terminal propeptide remains to be determined. Here we address this by examining the fate of precursors to ricin and ricin A-chain expressed with or without this propeptide, again in tobacco protoplasts. Our data show that the 9-residue propeptide influences both co-translational import and the extent of RTA glycosylation and also suggest that it may contribute to prevention of damage to endogenous ribosomes.
Recombinant DNAAll DNA constructs were generated in the expression vector pDHA (22). Expression constructs encoding ppRT, pRTA, pRTB, and phaseolin (pDHE-T343F) have been described previously (19, 23). The ricin active site substitution E177D has also been previously documented (24). All derivative constructs used in this work were generated by the QuikChangeTM method (Stratagene) using the following mutagenic primers (and their reverse complements, not shown): The N-terminal propeptide was deleted using 5'-GGATCCACCTCAGGGATATTCCCCAAACAATACC-3'; the signal peptide was deleted using 5'-CCTCTAGAGTCGAGGATGTGGTCTTTCACATTAGAGG-3'; the signal peptide and N-terminal propeptide were deleted together using 5'-CCTCTAGAGTCGAGGATGATATTCCCCAAACAATACCC-3'; the first and second glycosylation sites were disrupted using 5'-CCAAACAATACCCAATTATACAATTTACCACAGCGGGTGCC-3' or 5'-CCAATTCAACTGCAAAGACGTCAAGGTTCCAAATTCAGTGTG-3', respectively; the Gly-10 to Val substitution was introduced into pRTA or RTA using 5'-GGATCCACCTCAGTGTGGTCTTTTCACATTAG-3' or 5'-GGATCCACCTCAGTGATATTCCCCAAACAATACC-3', respectively; the Gly-10 to Val, Ser-8 to Val double substitution was introduced into pRTA using 5'-GGATCCACCTCAGTGTGGGTTTTCACATTAGAGG-3'; the last 8 residues of the propeptide were substituted for Gly in pRTA using 5'-GGATCCACCTCAGGGTGGGGAGGAGGAGGAGGAGGAGGAGGAATATTCCCCAAAC-3'; the Lys-4 to Gly substitution was made in pRTA using 5'-CCTCAGGGATATTCCCCGGACAATACCCAATTATAAAC-3'. Transformation of Protoplasts and Pulse-Chase ExperimentsProtoplasts were prepared from axenic leaves (47 cm long) of Nicotiana tabacum cv. Petit Havana SR1. Protoplasts were subjected to polyethylene glycol-mediated transfection, radiolabeled with Pro-Mix (Amersham Biosciences), and chased as described previously (19). In some experiments, before radioactive labeling, protoplasts were incubated for 1 h at 25 °C in K3 medium supplemented with 50 µg/ml tunicamycin (5 mg/ml stock in 10 mM NaOH; Sigma). At the desired time points, 3 volumes of cold W5 medium were added and protoplasts were pelleted by centrifugation at 60 x g for 10 min at 4 °C. Cells were frozen on dry ice and stored at 80 °C. Protoplast FractionationProtoplast pellets (from 500,000 cells) were resuspended in 170 µl of sucrose buffer (100 mM Tris-HCl, pH 7.6, 10 mM KCl, 1 mM EDTA, 12% (w/w) sucrose, supplemented with Complete protease inhibitor mixture (Roche Applied Science)) and homogenized by pipetting 50 times with a Gilson-type micropipette though a 200-µl tip. Intact cells and debris were removed by centrifugation for 5 min at 500 x g. From the 160 µl recovered, 32 µl was saved and directly used for immunoprecipitation. The remainder was loaded on a 17% (w/w) sucrose pad and centrifuged at 100,000 x g for 30 min at 4 °C. Pellets (microsomes) and supernatants (soluble proteins) were diluted in protoplast homogenization buffer and used for immunoprecipitation. Protease Protection AssayProtoplast pellets (from 500,000 cells) were homogenized in 12% sucrose buffer as described above, but omitting protease inhibitors, and debris was removed by spinning at 500 x g for 5 min. Supernatants were divided into three aliquots and incubated for 30 min at 25 °C with either buffer (as a control) or proteinase K (5 mg/ml stock in 50 mM Tris-Cl, pH 8, 1 mM CaCl2; Calbiochem) at a final concentration of 75 µg/ml in the presence or absence of 1% Triton X-100. Phenylmethylsulfonyl fluoride was added to 20 mM final concentration to inhibit proteinase K before immunoprecipitation. Preparation of Protein Extracts and ImmunoprecipitationFrozen samples were homogenized by adding protoplast homogenization buffer (19) supplemented with Complete protease inhibitor mixture (Roche Applied Science). Homogenates were used for immunoprecipitation with polyclonal rabbit anti-RTA, anti-BiP (23), or anti-phaseolin antisera. Immunoselected polypeptides were analyzed by 15% SDS/PAGE. Gels were treated with Amplify (Amersham Biosciences) and radioactive polypeptides revealed by fluorography. Densitometry was performed using Aida image analyzer (v.3.11). Toxicity MeasurementsTriplicate aliquots of 330,000 protoplasts were co-transfected with a toxin-encoding plasmid or empty vector (pDHA) and the phaseolin-encoding construct pDHET343F. After 16 h of recovery, protoplasts were pulse labeled for 1 h before being pelleted as described. Polypeptides immunoselected from homogenates using anti-phaseolin anti-serum were separated on SDS-PAGE before fluorography and densitometry as before. Toxicity of the various constructs was expressed as percentage of phaseolin synthesis with respect to protoplasts co-transfected with empty vector instead.
Expression and Purification of pRTA and
N-Glycosidase Activity Assay of pRTA and
The Ricin Propeptide Affects the Efficiency of GlycosylationIn the few cases where the sequence of the mature N terminus of ribosome-inactivating proteins is known, it is possible to compare the cDNA presequences (Fig. 1A). The signal peptide cleavage site can be predicted with high accuracy using the SignalP 3.0 server (26). In the case of preproricin (9), preproabrin C (27), and preprogelonin (28), non-conserved amino acid segments are present between the signal peptidase cleavage site and the mature domain (Fig. 1A). To analyze the function of the 9-residue N-terminal propeptide of preproricin in vivo we generated a mutant preproricin lacking this sequence (Fig. 1, p ricin) and compared its fate in tobacco mesophyll protoplasts with that of wild type. Because RTA has been shown to be active on tobacco ribosomes (29), these and all other ricin-based constructs described herein were generated in the background of an active site mutation (E177D) (24) unless otherwise stated. Transfected protoplasts were pulse labeled for 1 h with [35S]methionine and [35S]cysteine and then chased for 5 h. Immunoprecipitation with anti-RTA antiserum revealed p ricin expression comparable with that of wild type (Fig. 2A, compare lanes 3 and 5). After 5 h of chase, no immunoreactive species were recovered from the medium, with both wild-type and mutant precursor polypeptides (gray arrowheads) instead being processed to yield mature RTA and RTB (Fig. 2A, lanes 4 and 6, open arrowheads). We have previously demonstrated that this processing occurs in vacuoles (7). The N-terminal propeptide does not, therefore, affect the targeting of the ricin precursor to this compartment.
An additional, faster migrating band was generated from p
The Ricin Propeptide Influences ER ImportWhen RTA polypeptides were immunoselected and resolved by SDS-PAGE a third protein, with a mobility between the glycosylated and non-glycosylated RTA, was also reproducibly detected (Fig. 3, A and B). To probe the identity of this species, we first investigated its intracellular fate. Protoplasts expressing either pRTA or RTA were homogenized and total microsomal membranes prepared by centrifugation through a 17% sucrose pad. Clearly, this form of RTA (open arrowhead) remained associated with membranes throughout the time course (Fig. 4A, M, lanes 14, 17, 20, and 23). By contrast, the glycosylated and non-glycosylated forms of RTA (black arrowheads) behaved like pRTA in that, following sequestration within the ER (microsomes (M) in Fig. 4A) during synthesis, they were subsequently retrotranslocated to the cytosol (soluble fractions (S) in Fig. 4A) in the chase. The size of the stably membrane-associated RTA was consistent with it being non-glycosylated and bearing an uncleaved signal peptide. To test this, we resolved pRTA and RTA immunoprecipitates from tobacco protoplasts alongside the same proteins translated in vitro in the absence of microsomal membranes (Fig. 4B). The intermediate-sized RTA form that was generated in tobacco cells co-migrated with the equivalent in vitro translated product (Fig. 4B, compare lanes 4 and 5, open arrowhead). This strongly suggests that this was indeed signal peptide-uncleaved, non-glycosylated A-chain. Signal peptide cleavage after residue 26 of preproricin is clearly predicted in both pRTA and RTA by the SignalP 3.0 server (26). We therefore reasoned that the persistence of the signal peptide was more likely due to a defect in co-translational import, preventing exposure of the sequence to signal peptidase. As the standard fractionation analysis (Fig. 4A) does not allow us to distinguish between lumenal RTA and any RTA bound to the surface of the microsomes, this was clarified using a protease protection assay (Fig. 4C). Unlike the lumenal chaperone BiP (Fig. 4C, lower panel) and glycosylated or non-glycosylated signal peptide-cleaved RTA (upper panel, black arrowheads), the putative signal peptide-uncleaved RTA (open arrowhead) was fully sensitive to protease attack in the absence of detergent (compare lanes 13 and 14 and 16 and 17). This is consistent with the cytosolic exposure of a non-imported, membrane-tethered species of RTA.
Although lack of ER import explains why the signal peptide-uncleaved RTA is not glycosylated, a proportion of the correctly imported and processed RTA also failed to receive a glycan. One reason for this may be that the glycosylation site at Asn-10 of the mature domain of RTA is too close to the membrane during import, prior to signal peptide cleavage, for efficient glycosylation by oligosaccharyl transferase. To investigate this, we generated mutants of pRTA and RTA with the intention of preventing signal peptide cleavage and analyzed whether these proteins became glycosylated by comparing them with equivalent forms produced in tunicamycin-treated cells. Mutation of the predicted signal peptide cleavage site in pRTA, by replacement of Gly with Val at position 10, was ineffective in preventing signal peptide removal (Fig. 5A, lanes 5 and 6). Alternative cleavage occurred, most probably at the nearby Ser residue 8 within the propeptide (Signal P 3.0) (26). We therefore mutagenized both Gly-10 and Ser-8. Expression of the double mutant pRTAG10V, S8V yielded two RTA forms in roughly equal proportions. The larger protein displayed the gel mobility expected for a processed and glycosylated RTA carrying an uncleaved signal peptide (Fig. 5A, compare lanes 3 and 7). Correspondingly, this was absent when synthesized in the presence of tunicamycin (Fig. 5A, lane 8). Even though there is still some cleavage (Fig. 5A, lane 7, lower band), it is clear from this analysis that RTA containing the N-terminal propeptide can be glycosylated even when the signal peptide remains attached. By contrast, the signal peptide-uncleavable mutant RTAG10V (this mutation alone was sufficient to abolish cleavage in the absence of the propeptide) was almost completely non-glycosylated (Fig. 5A, lane 11). If the propeptide was acting as a spacer in this regard, we reasoned that the glycosylation of RTA could be increased by inserting an artificial sequence in its place. We therefore generated W(G)8 RTA (Fig. 1), in which the 9-residue propeptide was replaced by a Trp (to preserve the signal peptide cleavage site) and 8 Gly residues. Clearly, this product became glycosylated as efficiently as wild-type pRTA (Fig. 5B, compare lanes 2 and 4).
Interestingly, and in contrast to RTA, there was no evidence of a signal peptide-uncleaved form of W(G)8 RTA (Fig. 5B, compare lanes 3 and 4, open arrowhead), suggesting that the insertion of this spacer also served to improve co-translational import. Because charge distribution in the signal peptide and its flanking region can influence import (30), we substituted the first positively charged residue of mature RTA, Lys 4, with Gly ( RTAK4G, Fig. 1). This substitution did indeed appear to improve ER import, with more RTAK4G instead appearing as the signal peptide cleaved, glycosylated form (Fig. 5B, compare lanes 3 and 5, open arrowhead and upper black arrowhead).
The Absence of the Propeptide Increases Toxicity of RTAWe have shown that deletion of the propeptide impaired ER import and resulted in inefficient glycosylation of RTA. However, the fraction of RTA that is released into the ER lumen, either glycosylated or non-glycosylated, can still retrotranslocate into the cytosol (Fig. 4A, lanes 15, 18, 21, and 24). We have previously shown that similarly dislocated pRTA is toxic to tobacco ribosomes. To test whether RTA is also toxic, tobacco protoplasts were transfected with plasmids encoding pRTA, pRTAN10Q, RTA, or RTAN10Q, this time with functional active sites. As a protein synthesis reporter to monitor ribosome inactivation, cells were co-transfected with a plasmid encoding the bean storage protein phaseolin. We then immunoprecipitated phaseolin and compared its expression levels in the presence or absence of the various toxin mutants. Strikingly, RTA was found to be 3-fold more toxic than pRTA (Fig. 6). This increase in toxicity was not due to the difference in glycosylation of RTA, because the non-glycosylated mutant ( RTAN10Q) was also three times more toxic than pRTAN10Q (Fig. 6).
If
Interestingly, and by striking contrast, RTA or
Ricin is synthesized in developing R. communis endosperm as a precursor (Fig. 1, preproricin) containing both the RTA and RTB moieties. In its unprocessed form, this precursor also contains a 26-residue signal peptide (9), followed by a 9-residue N-terminal extension preceding the RTA sequence, and a 12-residue internal sequence containing vacuolar sorting information linking RTA and RTB. Upon deposition in PSVs, the two propeptides are removed to generate mature, heterodimeric ricin (Fig. 8) (7, 1114). In developing endosperm, ricin remains isolated in PSV until the seed germinates, when it becomes proteolytically degraded to provide a source of amino acids to fuel early post-germinative growth (31, 32). The vacuolar isolation of ricin in endosperm cells is essential, because Ricinus ribosomes are themselves susceptible to the RTA-mediated modification that accounts for the exquisite toxicity of ricin (5). The same principle applies to any potent ribosome-inactivating protein (RIP) that enters the secretory pathway.
Unlike other ricin-coding regions, the role of the 9-residue N-terminal propeptide is unknown. In the present study we have addressed the significance of this sequence using transient expression in tobacco protoplasts, a system whose efficacy in faithfully reproducing the biosynthesis of ricin has previously been demonstrated (1720). Deleting the 9-residue propeptide from preproricin (p
It is possible that the deletion of the propeptide may affect RTA glycosylation at this site in several ways. First, RTA glycosylation is almost fully dependent on signal peptide cleavage in the absence of the propeptide. Indeed, when signal peptide cleavage was artificially compromised by mutagenesis, glycosylation at Asn-10 was also almost entirely blocked in the fraction of
Expression and gel resolution of RTA also revealed another immunoprecipitable band with a gel mobility lying between the glycosylated and non-glycosylated RTAs. This non-glycosylated A-chain remained membrane associated, whereas the other RTA forms were retrotranslocated to the cytosol with time. Further analysis identified this protein as being non-imported (Fig. 4C). Because this form of native RTA was never observed, we conclude that the N-terminal propeptide must somehow facilitate co-translational import or prevent the abortion of import. Recently, it has been proposed that cleavable signal peptides of secretory proteins invert during synthesis (35). This exposes the cleavage site to signal peptidase on the lumenal surface of the ER, leaves the N terminus pointing toward the cytosol, and allows the C terminus of the nascent chain to translocate into the lumen. Inversion is dependent on a number of factors, including the distribution of charged residues flanking the hydrophobic core and the length of the hydrophobic core itself (30). It is possible that the propeptide facilitates such signal peptide inversion in RTA. That the insertion of a string of Gly residues can compensate for the missing propeptide, permitting complete ER import, indicates that a region(s) immediately following the propeptide may be inhibitory to this inversion. The first charged residue in mature RTA (Lys-4) is a conserved and functionally important surface-exposed residue. When this residue was replaced with Gly in RTA, import was improved (Fig. 5B). This raises the possibility that the propeptide may serve to distance the Lys residue from the signal peptide, allowing it to be preserved at this N-proximal site.
In addition to the influence on ricin biosynthesis described above, we have also shown that the presence of the N-terminal propeptide significantly reduced the toxicity of RTA when expressed in tobacco protoplasts. Earlier work characterizing pRTA expression in tobacco has shown that ER-localized pRTA is able to undergo retrotranslocation to the cytosol, a process that results in the proteasomal degradation of most of the toxin (20, 36). However, a fraction of retrotranslocated toxin somehow uncouples from these steps to inactivate ribosomes and shut down protein synthesis. Intriguingly, although the presence of the propeptide markedly decreased the toxicity of ER-targeted RTA, neither its retrotranslocation into, nor its stability within, the cytosol appeared affected. The same was true when the difference in their glycosylation was eliminated. Most importantly, the catalytic activities of cRTA and c RTA, either directly expressed in the cytosol or produced recombinantly and exposed to purified ribosomes in vitro, were identical within the limits of our assays.
As described, another difference in behavior of pRTA and Do these observations have physiological relevance? Clearly, promoting the successful import of a protein is advantageous to the producing plant, especially in a dedicated storage tissue. Likewise, glycosylation has been associated with long term protein stability in planta (37). While the ribosomes of R. communis are sensitive to RTA (5), the ricin precursor is not enzymatically active (10). On the other hand, inefficient import, as we have seen when the propeptide is absent, would potentially lead to proteolytic processing of proricin and folding of the RTA moiety on the cytosolic surface of the ER membrane to generate a stable population of toxin capable of damaging Ricinus ribosomes. It is plausible that the spacing provided by the propeptide acts in concert with the synthesis of ricin as an inactive precursor and the relative recalcitrance of Ricinus ribosomes to reduce the possible toxic effects of this toxin's expression in endosperm tissue. Similarly, the two lysine residues in the catalytic polypeptide have been implicated in reducing toxicity in the producing tissue, in this case by permitting polyubiquitination and thus promoting the proteasomal degradation of any dislocated toxin or toxin-containing fragment (36). It is interesting therefore that the N-proximal of these conserved lysines (Lys-4) is also inhibitory to nascent chain import in the absence of the propeptide. Interestingly, a lysine residue adjacent to the propeptide is a feature of other RIPs (Fig. 1A, underlined). The biosynthesis and mechanism of action of protein toxins such as ricin is of considerable current interest (38), particularly where toxin subunits are expressed in the secretory pathway both in plants and heterologous systems (9, 17, 20, 36, 39). The tissue that manufactures this potent toxin contains ribosomes that are themselves susceptible to its catalytic activity. The question of how the plant protects itself during toxin synthesis is therefore of paramount importance and may have parallels to other systems in which sensitive cells express deadly poisons. Even within the plant kingdom, ricin (regarded as the archetypal RIP) is just one member of the 100+ RIP family (40). The mechanism of protection we describe may therefore be wide-spread in nature. Together, our data suggest that the propeptide facilitates both the import and glycosylation of nascent preproricin and, in so doing, possibly helps to reduce the risk of exposing endogenous ribosomes to the deleterious effects of this potent toxin. Other ER-directed ribosome-inactivating proteins also seem to possess N-terminal propeptides (Fig. 1A). The precise sites of signal peptide cleavage in many other plant toxins are yet to be determined, and thus there are likely to be many more RIPs containing this spacer.
* This work was supported by Biotechnology and Biological Sciences Research Council Grant C17404 [GenBank] (to L. F. and L. M. R.) and a WT program grant (to L. M. R. and J. M. L.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 Both authors contributed equally to this work. 2 To whom correspondence should be addressed. Tel.: 44-2476-523558; Fax: 44-2476-523701; E-mail: lynne.roberts{at}warwick.ac.uk.
3 The abbreviations used are: PSV, protein storage vacuoles; RIP, ribosome-inactivating protein; RTA, ricin A-chain; RTB, ricin B-chain; ER, endoplasmic reticulum.
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