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J. Biol. Chem., Vol. 281, Issue 36, 25882-25892, September 8, 2006
The Inner Interhelix Loop 45 of the Melibiose Permease from Escherichia coli Takes Part in Conformational Changes after Sugar Binding*![]() 1![]() ¶2 3![]()
From the
Received for publication, February 8, 2006 , and in revised form, June 20, 2006.
Cytoplasmic loop 45 of the melibiose permease from Escherichia coli is essential for the process of Na+-sugar translocation (Abdel-Dayem, M., Basquin, C., Pourcher, T., Cordat, E., and Leblanc, G. (2003) J. Biol. Chem. 278, 15181524). In the present report, we analyze functional consequences of mutating each of the three acidic amino acids in this loop into cysteines. Among the mutants, only the E142C substitution impairs selectively Na+-sugar translocation. Because R141C has a similar defect, we investigated these two mutants in more detail. Liposomes containing purified mutated melibiose permease were adsorbed onto a solid supported lipid membrane, and transient electrical currents resulting from different substrate concentration jumps were recorded. The currents evoked by a melibiose concentration jump in the presence of Na+, previously assigned to an electrogenic conformational transition (Meyer-Lipp, K., Ganea, C., Pourcher, T., Leblanc, G., and Fendler, K. (2004) Biochemistry 43, 1260612613), were much smaller for the two mutants than the corresponding signals in cysteineless MelB. Furthermore, in R141C the stimulating effect of melibiose on Na+ affinity was lost. Finally, whereas tryptophan fluorescence spectroscopy revealed impaired conformational changes upon melibiose binding in the mutants, fluorescence resonance energy transfer measurements indicated that the mutants still show cooperative modification of their sugar binding sites by Na+. These data suggest that: 1) loop 45 contributes to the coordinated interactions between the ion and sugar binding sites; 2) it participates in an electrogenic conformational transition after melibiose binding that is essential for the subsequent obligatory coupled translocation of substrates. A two-step mechanism for substrate translocation in the melibiose permease is suggested.
Co-transporters catalyzing specifically the transfer of organic substrates and ions across membranes are of primary importance for the life of cells. One of these co-transporters belonging to the galactosides-pentoses-hexuronides transport family (1) is the melibiose permease (MelB)4 of Escherichia coli. MelB functions as a secondary active co-transporter that links uphill solute transport ( -galactosides, such as 6-O- -D-galactopyranosyl-D-glucose (melibiose), or -galactosides, such as methyl-1-thio- -galactopyranoside) to a downhill electrochemical ion gradient. It is most unusual in its ability to use either H+, Na+, or Li+ as coupling ion depending on which sugar is being transported (reviews in Refs. 1 and 2). The binding of the cation enhances the affinity of the transporter for the co-transported sugar, and vice versa melibiose enhances the affinity of the transporter for Na+ (15).
Consisting of 473 amino acids, this highly hydrophobic protein (70% apolar) has 12 transmembrane-spanning Extensive cysteine-scanning mutagenesis studies concentrated thus far mainly on membrane domains of MelB. However, three observations led us to focus on the role of the highly charged cytoplasmic loop 45 for MelB symport activity. First, MelB substrates protect the protein cooperatively against proteolysis of loop 45 (7). Second, active-site-directed labeling of the protein showed that the arginyl residue 141 of this same loop is a melibiose-protected target of labeling with a photoactivatable azidophenyl sugar analog (16). From the latter study, it was concluded that loop 45 is either directly involved in Na+ and/or sugar binding or contributes indirectly to the coupling interaction between the two binding sites. Third, among the positively charged amino acids of loop 45 that were individually replaced by a cysteine, only R141C, although able to bind the substrates, showed defects in the translocation process (17) suggesting that loop 45 is close to the sugar binding site and may participate directly in co-substrate translocation. In the present study, we bring additional evidence for an important role of loop 45 for the functioning and cooperative behavior of MelB. We analyzed the effects of individual cysteine replacement of the three negatively charged residues; i.e. D137C, E140C, and E142C. Because among the mutants only E142C showed substrate translocation defects, this mutant, together with the previously characterized R141C mutant (17), was investigated in detail by combining kinetic, electrophysiological, and fluorescence spectroscopy approaches. In particular, we analyzed transient electrical currents recorded from R141C and E142C by using the solid supported membrane (SSM) technique. The SSM has already been used to monitor electrogenic events associated to partial steps of the Na+ melibiose symport reaction (5, 18). In combination with spectroscopic evidence, the results suggest that loop 45 contributes to the coordinated interactions between the ion and sugar binding sites and participates in conformational changes after melibiose binding.
MaterialsSynthesis and labeling of p-nitrophenyl -D-6-[3H]galactopyranoside ( -[3H]NPG) or 6-O- -D-[3H]galactopyranosyl-D-glucose ([3H]melibiose), and synthesis of 2'-(N-dansyl)-aminoethyl-1-thio- -D-galactopyranoside (Dns2-S-Gal) were carried out by Dr. B. Rousseau and Y. Ambroise (Département de Biologie Joliot Curie/CEA-Saclay, France). Highest purity grade reagents (KH2PO4, Sigma, 0.005% Na+ and KOH Merck, suprapur, 0.002% Na+) were used to prepare nominally Na+-free media (contaminating Na+ level of <20 µM as determined by atomic absorption spectroscopy). 3-(N-Maleimidylpropionyl)biocytin (biotin maleimide, MPB), 4-acetamido-4'-maleimidylstilbene-2,2'-disulfonate (stilbene disulfonate), and the streptavidin-alkaline phosphatase conjugate were purchased from Molecular Probes, Inc. (Eugene, OR). The methanethiosulfonate derivatives (MTS reagents) were from Toronto Research Chemicals, Inc. (Toronto, Canada). Escherichia coli lipid extract for the reconstitution of proteins and diphytanoylphosphatidylcholine for the lipid film forming solution were from Avanti%20Polar%20Lipids">Avanti Polar Lipids, Inc. (Pelham, AL).
Bacterial Strains, Plasmids, and Site-directed MutagenesisA recombinant pK95
Preparation of Membrane VesiclesRight-side-out (RSO) membrane vesicles, prepared by an osmotic shock procedure (22), were concentrated to 2 mg of protein/ml and equilibrated in a medium containing 0.1 M KPi (pH 7). Inside-out (ISO) membrane vesicles were generated using a French pressure cell as described previously (20) and concentrated to Purification and Preparation of the ProteoliposomesMutated His-tagged MelB (Cys-less, D137C, R139C, R141C, or E142C) was purified from inverted membrane vesicles as described (20). A chromatographic procedure combining the utilization of nickel-nitrilotriacetic acid (Qiagen, Germany) and ion exchange resin (Macro-Prep-High-Q anion exchange support, Bio-Rad) were used to prepare nearly pure MelB (generally >99% (20)) solubilized in dodecylmaltoside (0.1%). MelB reconstitution into liposomes (protein/lipid ratio 1/5, w/w) (20) was performed by removing the detergent with Bio-Beads SM-2 (Bio-Rad) (23). Proteoliposomes were submitted to repeated freeze/thaw/sonication wash cycles in nominally Na+-free, 0.1 M KPi (pH 7) to eliminate Na+ (contaminating level <10 µM as determined by flame photometry). Purity of the reconstituted MelB was assessed by silver-stained SDS-PAGE. Protein content was measured in the presence of SDS by a Lowry assay. Identification of Second Site RevertantsE. coli expressing E142C grew initially as pale rose colonies on 1% melibiose MacConkey agar plates. After 35 days of incubation at 37 °C, small red areas appeared that were picked and re-streaked for colony purification. After isolation of the plasmid DNA, mutations responsible for fermentation recovery were identified by sequencing. Sugar Transport in CellsFreshly grown cells were concentrated to 2 mg of protein/ml in 0.1 M KPi (pH 7). The time course of transport of [3H]melibiose (0.4 mM, 20 mCi/mmol) in the presence or absence of NaCl or LiCl at a concentration of 10 mM was monitored at 22 °C by a rapid filtration procedure (17). Variation of transport rate and extent never exceeded 15% from batch to batch.
Western Blot AnalysisWestern blot analysis was applied to samples containing protein solubilized from RSO membrane vesicles (
Binding Assays Entrance Counterflow ActivityCounterflow activity was assessed in RSO membrane vesicles (20 mg/ml) at room temperature as described (17). Solid Supported Membrane Set-up and Measuring ProcedureProteoliposomes containing Cys-less, R141C, or E142C MelB were adsorbed to the SSM (5, 24). Activating and non-activating solutions for SSM measurements contained 0.1 M KPi (pH 7) plus NaCl/KCl and melibiose/glucose at concentrations as indicated in the figure legends. Transient currents upon addition of one or both of the co-substrates were recorded. The solution exchange protocols were as described (5). All experiments were carried out at room temperature (22 °C).
Fluorescence AssaysAn LS 50 fluorometer (PerkinElmer Life Sciences) was used to measure the Na+-dependent fluorescence resonance energy transfer (FRET) signals (
Orientation of the Protein in the LiposomeLiposome suspensions containing purified Cys-less or single cysteine R139C (
The three acidic residues of loop 45 of MelB (Asp-137, Glu-140, and Glu-142) and the positively charged residues Arg-139 or Arg-141 (17) were individually replaced by a cysteine using the Cys-less MelB sequence as genetic background. The Cys-less MelB served also as control throughout this study as its functional properties are similar to those reported for the wild-type MelB (15, 17).
Functional Properties of D137C, E140C, and E142Initial characterization of D137C, E140C, and E142C MelB mutants included: 1) the measurement of the time course of melibiose accumulation in bacteria in the presence or absence of saturating concentrations of activating Na+ or Li+ (10 mM) and 2) the estimation of the expression level of the mutated transporter. Although initial rate and sugar accumulation at equilibrium in the presence of Na+ (10 min) by D137C or E140C cells were 0.9 or 0.45 times the values measured in Cys-less MelB, the level of E142C sugar accumulation was reduced by a factor of 10 (Fig. 1A). Similar to the wild-type, melibiose transport activity was stimulated by Na+ and Li+ both in the Cys-less mutant and in D137C, E140C, and E142C (Fig. 1A). Strikingly, the residual transport observed in E142C was completely abolished in the presence of 0.2 mM N-ethylmaleimide (NEM), whereas that of D137C or E140C was not sensitive to the sulfhydryl reagent (data not shown). Comparison of the expression levels of Cys-less MelB and the mutants suggests that the reduced transport activity of D137C and E140C MelB can be satisfactorily accounted for by the reduction of the expression level of the two mutants (
Measurement of sugar binding affinity in RSO membrane vesicles using the high affinity radiolabeled sugar analog The sugar translocation properties of MelB can be assessed by measuring entrance counterflow in de-energized RSO membrane vesicles (17). The early transient influx of labeled substrate (overshoot) is tightly coupled to the downhill efflux of internal unlabeled sugar occurring when RSO membrane vesicles, pre-loaded with a sugar at high concentration, are diluted in a medium containing a lower sugar concentration (2, 28). The radiolabeled sugar influx is primarily associated to shuttling of the loaded ternary complex (MelB-ion-sugar) across the membrane and does not include a contribution of the empty carrier. The peak of the transient uptake of [3H]melibiose observed after 1 min in Cys-less MelB was absent in E142C (Fig. 1B). Instead, the intravesicular level of radioactive melibiose in E142C steadily increased until a plateau value was reached. This influx of labeled sugar was significantly inhibited by NEM (data not shown). Summarizing, the defect of melibiose transport function of E142C included both a small reduction of sugar affinity and an impaired sugar translocation process. As will be further emphasized in the discussion, it is striking that mutagenesis of the neighboring E142C and R141C residues (17) gave rise to similar defects of the MelB translocation mechanism.
It is finally worth mentioning that we isolated a second-site revertant of E142C with an additional mutation on I22S that is positioned on the inner half of helix I (E142C/I22S). Despite a permease expression level only slightly higher than that of E142C ( 50% versus 40%, respectively, data not shown), the revertant exhibited a Na+-stimulated melibiose transport activity five times higher than that of E142C (Fig. 1C) and a higher -NPG affinity (apparent KD = 2.1 µM versus 3.4 µM, data not shown). The fact that a substitution of an apolar residue (isoleucine) by a polar residue (serine) located on helix I was able to compensate the loss of the negative charge at position 142 suggests first that helix I and loop 45 might be close to each other. Secondly, while this negative charge is not absolutely required, the need for a local polar environment at its level is important for the transport function and is party satisfied by introduction of the Ile to Ser mutation at position 22. Charge Translocation of R141C and E142CFurther insights into the R141C (17) and E142C defects were gained by comparing transient electrical currents recorded from liposomes containing purified mutated MelB, which were adsorbed onto the SSM and submitted to MelB co-substrate concentration jumps (5). Previous studies have shown that the transient signals recorded from wild-type MelB containing proteoliposomes include either a single fast decaying component (in the range of 10 ms) or a combination of a fast and a slow decaying component (range of 100 ms) depending on the composition of the imposed substrate concentration jump (5). Whereas the fast component was assigned to intraprotein charge transfers associated to or triggered by the binding of either co-substrate, the slow component has been related to stationary substrate transport and will, hence, be termed transport component. The analysis of the R141C and E142C variants of MelB presented in the following was based on a comparison with Cys-less transporter. Although a few minor quantitative differences exist between the wild-type (WT) and the Cys-less transporter (see below), the comparison between the mutants and the Cys-less transporter was the strictly correct procedure as R141C and E142C were constructed on a Cys-less background. Furthermore, the large defects introduced by removing the charges at position 141/142 were clearly distinguishable from small differences in affinity and/or sizes of peak currents between the Cys-less and the WT transporter.
As shown in Fig. 2, significant differences were observed between the amplitudes and/or the time courses of decay of the transient electrical currents recorded on the one hand from R141C and E142C mutants and on the other hand from Cys-less MelB. A melibiose concentration jump (
We previously showed by a transport assay that reintroducing a positive charge by reacting R141C with MTSEA+ partially restores active substrate transport (17). This was now confirmed by electrical measurements. Accordingly, Fig. 3, illustrating a typical Na mel concentration jump experiment after treatment of R141C with MTSEA+, systematically showed a partial recovery of the slow electrical transport component. This was supported by the observation that a bi-exponential function was required for fitting the time course of decay of the electrical signal and that a mono-exponential function was not sufficient (Fig. 3, inset). In contrast to this observation, any attempts to restore the transport component with the negatively charged sulfhydryl reagents MTSES ((2-sulfonatoethyl)methanethiosulfonate) in the E142C mutants failed, perhaps due to accessibility limitation (data not shown). Fig. 2 not only shows that the shape of the decaying part of the electrical signal is modified by the mutations but also indicates significant changes in the amplitudes of the peak currents. To better assess the mutant versus Cys-less signal differences, the relative rather than absolute values of the various peak currents were considered. To this end, we took the peak current elicited by a Na+ concentration jump for each studied mutant or wild-type as reference (100% signal in Fig. 4), because the Na+ partial reactions were not affected by the mutation, whereas the melibiose partial reactions were severely reduced (see below).
Several important observations can be made in the diagram shown in Fig. 4. First, the peak current elicited by a melibiose jump in the presence of either H+ (
It is finally interesting to note that NEM added to Cys-less, R141C, or E142C proteoliposomes had no influence on the electrical signals (data not shown). Also not shown are electrical signals evoked by concentration jumps on R139C proteoliposomes, a mutant that functions similar to the wild-type (17), which had relative peak currents and time constants very similar to Cys-less MelB. The peak current (Ip), plotted as a function of the respective substrate concentration, resulted in hyperbolic curves (not shown) that were fitted with a Michaelis-Menten-like function (Ip = Imaxp*c/(c + K0.5), where c = Na+ or melibiose concentration, respectively, K0.5 = half-saturation concentration). As shown previously, the K0.5 values of wild-type MelB correlated well with the apparent affinities for the substrates measured with other methods (5). Half-saturation concentrations determined for Cys-less MelB were similar to the wild type (Table 2). The cooperative effect of melibiose on Na+ binding was conserved in E142C, as the half-saturation concentration of Na+ decreased in the presence of melibiose (Table 2). In contrast, the KNa0.5 in the presence or absence of melibiose was similar in R141C (Table 2). Unfortunately, for R141C and E142C we were not able to determine K0.5 values for melibiose in the absence or presence of Na+. The melibiose signals were too small to yield reasonable currents at low sugar concentrations. However, we could measure stable melibiose signals with R141C in the presence of MTSEA+ determining a Kmel0.5 similar to that for Cys-less but not significantly stimulated by Na+ (Table 2). The defect of R141C lies, thus, at least partly, on the level of the cooperative interactions between the two binding sites.
Fluorescence Analysis of R141C and E142CInsights into co-substrate-induced structural changes of MelB can be obtained from FRET spectroscopy measurements of RSO membrane vesicles or proteoliposomes incubated in the presence of the -galactoside fluorescent sugar analog Dns2-S-Gal (25). The fluorescence emission signal is due to a FRET phenomenon between the MelB tryptophans and the Dns2-S-Gal molecules specifically bound to the transporter (25) and is much more prominent in the presence of 10 mM NaCl than in its absence. The change in the Dns2-S-Gal microenvironment induced by Na+ most likely reflects a variation of MelB structure close to the sugar binding site (25). Analysis of the FRET properties of R141C and E142C proteoliposomes showed that both retained a significant Na+-dependent FRET signal (Fig. 5A). The emission maximum of E142C, but not of R141C, was shifted from 460 nm in Cys-less to 480 nm in E142C (Fig. 5A). This means that Na+ still induced a cooperative modification of the sugar binding site structure in E142C, but the vicinity of the sugar environment is more polar than in Cys-less or R141C. The specific fluorescence signal evoked by R139C proteoliposomes (not shown) was like that in the Cys-less permease. In addition, intrinsic tryptophan fluorescence studies, reflecting essentially conformational changes of the protein after substrate binding (27), were performed on Cys-less, R139C, R141C, and E142C proteoliposomes. As for the wild-type (27), the Cys-less mutant fluorescence emission was slightly quenched by Na+, and subsequent melibiose addition induced a large fluorescence change (Fig. 5B). R139C showed a similar fluorescence behavior (data not shown). In contrast, melibiose and Na+ addition to E142C and R141C did not enhance the fluorescence signal significantly (Fig. 5B, inset). Upon addition of MTSEA+ to R141C, the sugar-induced fluorescence change did not return (data not shown). Also, NEM did not change the fluorescence properties of E142C (data not shown). In conclusion, the results of the tryptophan emission studies suggest that conformational changes following melibiose binding as reflected by the fluorescence properties are disturbed in the two mutants.
Orientation of the Protein in the ProteoliposomesSingle Cys mutation R139C, located within the intracellular loop 45 of the protein (8, 9), was selected to determine the orientation of the protein in the liposome, because R139C is functional and has characteristics similar to that of Cys-less MelB (see Ref. 17 and above). The thiol-specific, non-membrane-permeable compound MPB reacted with the inside-out oriented transporters (ISO) of R139C (Fig. 6A, lane ISO). Repeated freeze-thaw sonication cycles in the presence of MPB, which make both sides of the liposomes accessible to MPB, did not influence the labeling reaction to any extent (Fig. 6A, lane ALL). The membrane-impermeable stilbene disulfonate blocked MelB labeling completely (Fig. 6A, lane NO), but when freeze-thaw sonication cycles were applied to the MPB labeling reaction after the incubation with stilbene disulfonate, a faint band was visible (Fig. 6A, RSO) indicating that a small portion of the protein is RSO-oriented. The negative control, Cys-less transporter, showed nonspecific reactions of the maleimide at concentrations higher than 10 µM MPB (Fig. 6B), but these weak diffusive bands were clearly distinguishable from the very strong bands detected in R139C. Western blot analysis ensured equal amounts of protein in all samples (see Protein lanes in Fig. 6). Similar results were obtained for the non-transporting mutant R141C (data not shown) suggesting that functional as well as non-functional MelBs orient mainly in the ISO configuration in the liposomes. Consequently, the kinetic properties determined in this study by SSM measurements refer to the backward running carrier. Finally, proteolysis experiments with trypsin (7) showed that the full-length MelB in proteoliposomes disappeared very rapidly (60% after 10 min of incubation) with the concomitant appearance of the cleavage fragments (data not shown). Because only cytoplasmic domains of MelB are processed by the protease (7), this result reinforces the conclusion of a predominant ISO orientation of MelB in proteoliposomes.
This study provides evidence that loop 45 connecting helices IV and V of MelB, and especially the adjacent charged residues Arg-141 and Glu-142 within it, play a key role in MelB symport activity. Together with the previous characterization of the R141C mutant (17), the kinetic, electrophysiological, and spectroscopic data reported above suggest that both Arg-141 and Glu-142 participate in conformational changes involved in the mechanism of Na+-sugar symport.
MelB Is Uniformly Oriented Inside-Out in the LiposomesUsing the impermeable thiol-specific compound MPB to assess MelB orientation in the proteoliposomes we have demonstrated that the transporters are uniformly ISO-oriented (Fig. 6). The observed extensive rate of cleavage of MelB cytoplasmic domains in those proteoliposomes by trypsin supports this conclusion (see results and also Ref. 7). The finding of the unidirectional configuration was unexpected, because the reconstitution method that was used, i.e. detergent removal and subsequent freeze-thaw sonication of the samples, is generally believed to lead to scrambled rather than homogenous protein orientation (29). However, a slow rate of detergent removal, in particular during progressive addition of SM-2 Biobeads, gives rise to a mixture of small detergent-saturated liposomes, lipid-protein-detergent micelles, and protein-detergent micelles, and the remaining detergent participates in the process of protein insertion (29). This situation mimics to some extent the one in which the use of preformed, detergent-saturated liposomes has been shown to favor unidirectional ISO insertion of proteins with their large and/or charged hydrophilic domains exposed outside (e.g. for bacteriorhodopsin (29), the MelB homologue LacS (30), DtpT (31), and PutP (32)). According to topological and biochemical studies, also MelB has bulky and charged hydrophilic cytoplasmic domains, which should favor ISO insertion (7, 9). When interpreting the results below, we will frequently refer to a previously proposed extended six-state kinetic model for the Na+-melibiose co-transport reaction (3, 4, 18, 33). In light of the evidence presented under "Results," which suggests a uniform ISO orientation of MelB in proteoliposomes, we have adapted the original kinetic model to the situation of the transporter functioning in the reverse direction (see below and Fig. 7).
Substrate Binding in R141C and E142C Is Intact, but Substrate Translocation of the Loaded Carrier Is ImpairedCysteine-scanning mutagenesis of the charged residues of loop 45 indicates that only mutagenesis of the two adjacent residues Arg-141 and Glu-142 strongly impairs MelB functioning (Fig. 1 and Ref. 17). MelB transport activity is either completely (R141C) or largely (E142C) suppressed. Despite defective transport activity, both mutants retain the capacity to bind sugars, including the high affinity sugar
Partial activities of wild-type and R141C and E142C variants of MelB are summarized in Table 3. As a support for the following discussion this table also includes results from previous work. From Table 3 it is obvious that substrate binding in R141C and E142C MelB still occurs (columns "Binding" in Table 3), whereas the stationary activities (columns "Stationary Activity" in Table 3) are inhibited. In particular, the total loss (R141C (17)) or almost complete reduction (E142C, Fig. 1B) of melibiose counterflow of the two mutants is interesting, because counterflow occurs without Na+ transmembrane flow and involves only transitions 2
Conformational Changes after Melibiose Binding Are Disturbed in R141C and E142COther electrical properties and spectroscopic features of R141C and E142C provide a means to tentatively relate the mutant translocation defects to modified conformational changes during MelB cycling (column "conformational transition" in Table 3). Both R141C and E142C lose the capacity to generate fast transient electrical responses after melibiose concentration jumps in the absence ( mel) or presence of Na+ ( mel(Na)) even when the final sugar concentration was saturating (50 mM melibiose). A detailed characterization of these sugar-induced fast transient electrical signals in wild-type or Cys-less MelB has led to the conclusion that they are linked to conformational changes moving yet unidentified charged amino acids or helical dipoles (18). According to this explanation, these sugar-induced electrogenic conformational changes would be missing in R141C and E142C. Further evidence for a lack of sugar-induced conformational changes in the two mutants came from Trp fluorescence experiments. The typical Na+-dependent increase in the Trp fluorescence signal recorded in the native or Cys-less transporter after sugar binding was no longer observed in R141C or in E142C (Fig. 5B). This Trp fluorescence signal rise is due to a light emission increase from Trp-299 and Trp-342 in the C-terminal helices IX and X of MelB, respectively (19, 27) and has been attributed to cooperative conformational changes either associated to or following binding of melibiose. It must be recalled here that helices X and XI are among the different helices putatively lining the sugar binding site and/or the sugar pathway (16, 19, 26, 34, 35).
A Different Phenotype of Inhibition Is Observed in R141C and E142C as Compared with NEM-inhibited Wild-type MelBFor comparison, the effect of NEM on the partial activities of wild-type MelB has been included in Table 3. At first glance the phenotypes of R141C and E142C MelB seem to be the same as that of the NEM-inhibited WT protein: substrate binding is still intact while turnover is inhibited. Similar to the mutants, NEM-inhibited WT MelB can still form a ternary complex in RSO membrane vesicles as demonstrated by the observation of Na+-dependent
However, an important distinction shows up in the activities related to a conformational transition following melibiose binding (columns "conformational transition" in Table 3). The conformational transition was still observed in NEM-inhibited WT MelB, whereas it was absent in the mutants, suggesting that the partial reactions inhibited by NEM and by the mutations at position 141 and 142 are different. This could fit a model in which substrate translocation in MelB is a two-step process consisting of an electrogenic conformational transition inhibited in R141C and E142C MelB (3 An attractive hypothesis arises in light of the recent proposal that the shuttling of co-transporters from one side of the membrane to the other may involve more intermediates than initially deduced from the simple one-step alternate access model (36, 37). In particular, voltage-jump experiments on hSGLT1 demonstrated different conformational states occurring during the reorientation of the empty carrier from the inward to the outward facing conformation (38). An extra- and hypothetical intra-membrane kinetic intermediate (C' Na mel) has also been included in the MelB kinetic model recently on grounds of electrical measurements (18). The hypothetical step was assigned to an electrogenic conformational transition after melibiose binding (18). Also, combining cryo-electron microscopy data of OxlT at 6.5 Å with a model of the "open" state of the oxalate transporter deduced from the atomic structures of related transporters like the lactose permease from E. coli (39) hypothesized the existence of an oxalate-bound "closed" or "occluded" OxlT state. It is, therefore, tempting to associate the occluded state in MelB with the extra state C' Na mel (state 3' in Fig. 7) between the electrogenic conformational transition inhibited in the R141C and E142C variants and the subsequent NEM inhibitable reaction. Mutations of R141 and E142 Induce Changes in Structural and Cooperative Properties of MelBFRET studies indicate that the Na+-induced spectroscopic variations of Dns2-S-Gal bound to the sugar site differ in the two mutants. Whereas the emission in R141C is comparable to that from the Cys-less mutant (17), there is clearly a red-shift in E142C emission (Fig. 5A) indicating that the sugar binding site environment after binding of Na+ becomes proportionally less apolar as compared with Cys-less MelB (25). Thus, both mutations have not a strictly comparable impact on the structural properties of MelB. In addition, we noted that the KNa0.5 is dependent on melibiose in Cys-less and E142C but not in R141C. This latter finding is pointing out to an alteration of the cooperative interaction between the sugar and cation binding sites in R141C. Analysis of site-directed mutants, second-site revertants, or cysteine-scan screening in several predicted helices combined with sulfhydryl-reagent accessibility, suggest that several membrane domains from the N- or C-terminal half of MelB (I, II, IV, X, and XI) are lining the substrate sites and/or the translocation pathway (16, 19, 26, 34, 35, 4042). Consistently, the projection map or three-dimensional model, derived from two-dimensional crystals of MelB, at 8- or 10-Å resolution, respectively (6, 43), suggests that a central curve-shaped depression, tentatively assigned to the substrate pathway and/or substrate binding sites, is surrounded by about seven densities putatively interpreted as transmembrane helices. The derived three-dimensional structure of MelB (43) bears similitude to that emerging from the recently published structures at high resolution of LacY (44, 45), GlpT (46), or OxlT (4749). All these transporters are supposed to operate according to an alternating-access mechanism where conformational changes are associated to binding and translocation of the substrates. In this context, recent Fourier transform infrared and differential attenuated total reflectance-Fourier transform infrared studies (5052) support the existence of such structural changes by indicating sugar-induced increases in MelB compactness and substrate-induced changes of the transporter absorbance tentatively assigned to secondary structure components. Finally, several observations favor the notion that the N-terminal domains of MelB are essential for recognition of the coupling Na+, whereas other domains in the C-terminal half preferentially participate in the interactions with the sugar substrate. Coordinated interactions between some of the domains lining the two substrate binding sites are likely to be crucial for the cooperative and coupling properties of H+ or cation-coupled transporters. On the basis of this and previous studies, our current working hypothesis is that concerted interactions between several putative helices lining the central hydrophilic pathway (and/or the substrate-binding sites) are essential for substrate binding and translocation in MelB. Loop 45 may, thereby, be essential for the stabilization of the structure after binding of the substrates and/or for the translocation process. The set of interactions initially promoted by substrate binding (giving rise to the ternary MelB complex, Cin Na mel) may be distinct from that linked to translocation (C' Na mel). This working hypothesis has the merit to account for the observed dissociation of the binding and translocation events in the mutants. At the same time, it provides a simple explanation for the diversity of changes of cooperative and structural properties introduced by neighboring mutations located in a domain that cannot be strictly classified as a transmembrane region because of its accessibility to proteases (7). ConclusionsThe data presented here suggest that the local domain of loop 45 harboring the neighboring Arg-141 and Glu-142 residues plays an important role in the mechanism of Na+-sugar symport by MelB due to an interaction with the substrate binding sites. Loop 45 might contribute to the coordinated interactions between the ion and sugar binding sites and participates in a conformational change after melibiose binding that is essential for the subsequent obligatory coupled translocation of substrates. It is also proposed that substrate translocation proceeds as a two-step reaction: in the backward running carrier the first step is inhibited in R141C or E142C MelB, whereas the second is inhibited by NEM.
* This work was supported in part by a grant from the Commissariat à l'Énergie Atomique. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 Supported by a travel allowance from the Boehringer Ingelheim Fonds, a scholarship from the German Academic Exchange Service (Doktorandenstipendium im Rahmen des gemeinsamen Hochschulsonderprogramms III von Bund und Ländern), and the Max Planck Society.
2 Recipient of a short-term Max Planck Society fellowship and of partial support from the Ministry of Education, Romania. 3 To whom correspondence should be addressed. Tel.: 49-69-6303-2035; Fax: 49-69-6303-2002; E-mail: klaus.fendler{at}mpibp-frankfurt.mpg.de.
4 The abbreviations used are: MelB, melibiose permease; melibiose, 6-O-
We thank Heinrich Jung, Bert Poolman, Jan Knol, and Jean Louis Rigaud for help and/or fruitful discussion about the orientation assay and Raymonde Lemonnier for excellent technical assistance.
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