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J. Biol. Chem., Vol. 281, Issue 36, 26144-26149, September 8, 2006
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1
From the
Mississippi Functional Genomics Network (MFGN), Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi 39406 and the
Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110
Received for publication, April 14, 2006 , and in revised form, June 7, 2006.
| ABSTRACT |
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subunit. The ultimate target of the Snf3/Rgt2 pathway is Rgt1, a transcription factor that regulates expression of HXT genes encoding glucose transporters. We have found that the cAMP-dependent protein kinase A (PKA), which is activated by the Gpr1/Gpa2 glucose-sensing pathway and by a glucose-sensing pathway that works through Ras1 and Ras2, catalyzes phosphorylation of Rgt1 and regulates its function. Rgt1 is phosphorylated in vitro by all three isoforms of PKA, and this requires several serine residues located in PKA consensus sequences within Rgt1. PKA and the consensus serine residues of Rgt1 are required for glucose-induced removal of Rgt1 from the HXT promoters and for induction of HXT expression. Conversely, overexpression of the TPK genes led to constitutive expression of the HXT genes. The PKA consensus phosphorylation sites of Rgt1 are required for an intramolecular interaction that is thought to regulate its DNA binding activity. Thus, two different glucose signal transduction pathways converge on Rgt1 to regulate expression of glucose transporters. | INTRODUCTION |
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Rgt1 functions differently in cells exposed to different levels of glucose. In the absence of glucose, Rgt1 represses HXT expression in conjunction with Mth1 and Std1 (4) by binding to HXT gene promoters and recruiting the Ssn6 and Tup1 corepressors (4, 9). Induction of HXT gene expression is achieved by relieving Rgt1-mediated repression through glucose-induced degradation of Mth1 and Std1 (1012). Rgt1 also serves as a transcriptional activator that is required for full induction of HXT1 expression when glucose levels are high (4), although how it converts from a transcriptional repressor to an activator remains unclear. The level of glucose determines the phosphorylation state of Rgt1; it is hypophosphorylated in the absence of glucose and is hyperphosphorylated when glucose levels are high (9, 10, 13). It seems that glucose induces phosphorylation of Rgt1, which prevents it from binding to the HXT promoters and thus inhibits its repressor function (9, 10, 13).
The cAMP-dependent protein kinase A (PKA)2 is involved in many different cellular processes including cell growth, stress resistance, and metabolism (8, 1418). PKA is inactive during non-fermentative growth, existing as a tetrameric holoenzyme composed of two catalytic subunits encoded by one of three redundant TPK genes (TPK1, TPK2, and TPK3) and two regulatory subunits encoded by BCY1 (1921). The addition of glucose to cells induces a rapid elevation of the cAMP level due to activation of adenylate cyclase (Cyr1) via the Gpr1/Gpa2 and the Ras1/Ras2 pathways (2224, 4042). Binding of cAMP to the Bcy1 inhibitory subunit of PKA liberates the catalytic subunits, resulting in their activation (25). We report that glucose-activated PKA catalyzes phosphorylation of Rgt1, which results in altered Rgt1 function and relief of repression of the HXT genes.
| EXPERIMENTAL PROCEDURES |
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cells (FM557) were cotransformed with the PCR products (which overlap by the length of the PCR primers) and a URA3-containing plasmid that carries lexA (pSH2-1) (28), linearized by digestion with BamHI, selecting for Ura+ cells. The PCR products are incorporated into the plasmid by homologous recombination regenerating Rgt1 (but with the mutation changing Ser to Ala).
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of the input DNA was used as template in a 25-cycle PCR. The sequences of the PCR primer pair used to detect the HXT1 promoter were 5'-ATATAATTCCCCCCTCCTGAAG-3' (OM 3109) and 5'TGATTCTACGTTTTTGCAAGC-3' (OM3111). For Western blot analysis, 5 ml of yeast cells (A600 = 1.2) grown on different carbon sources (i.e. either 2% galactose or 4% glucose) were collected by centrifugation. The cells were resuspended in 100 µl of SDS-buffer (50 mM Tris-HCl, pH 6.8, 10% glycerol, 2% SDS, 5%
-mercaptoethanol) and boiled for 5 min. After centrifugation, soluble proteins were resolved by SDS-PAGE, transferred to polyvinylidene difluoride membrane (Millipore), and detected with the Anti-LexA monoclonal antibodies (Santa Cruz Biotechnology) and ECL system (Pierce).
In Vitro Protein Kinase AssayRgt1 fused to LexA (pBM3307 (4)) was harvested from yeast cell extracts with anti-LexA conjugated to agarose beads (Santa Cruz Biotechnology) in Nonidet P-40 buffer (50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 1% Nonidet P-40). After washing with Nonidet P-40 buffer containing 1 M NaCl, the LexA-Rgt1 beads were equilibrated with kinase buffer (50 mM Tris-Cl, pH 6.8, 150 mM NaCl, 0.5% Triton X-100, 1 mM dithiothreitol). The 119 yeast protein kinases fused to GST (29) were overexpressed in yeast cells and affinity-purified with glutathione-Sepharose-4B beads (Amersham Biosciences). The LexA-Rgt1 and glutathione S-transferase kinases were mixed in 50 µl of kinase buffer containing 0.5 µCi of [
32P]ATP, 100 µM ATP, 10 mM MgCl2 and incubated at 28 °C for 30 min. After washing the beads with the kinase buffer containing 0.5 M NaCl, the proteins were eluted by boiling the beads in SDS-sample buffer for 5 min. The eluted proteins were resolved by SDS-PAGE and detected by autoradiography. Each set of in vitro kinase assays was independently repeated twice.
Two-hybrid AssayTo construct Gal4 DNA-binding domain hybrids (Gal4 DBD-Rgt1), the N-terminal region of RGT1 (encoding amino acids 1392) was amplified by the PCR using pBM3580 (30) as a template, and the PCR products were incorporated into the GAL4-DBD plasmid (pBM3593 (30)) by gap repair (26, 27). These plasmids were combined with the GAL4 activation domain hybrid (GAL4-AD-Rgt1, encoding amino acids 450850 (30)) and used to transform yeast cells (FM413) to Leu+ Trp+. Yeast cells carrying both plasmids were grown to mid-log phase (A600 = 11.5) at 30 °C in the liquid medium containing galactose (2%), transferred to minimal medium containing galactose (2%) or glucose and grown for 45 min, and then assayed for
-galactosidase activity.
-Galactosidase activity assays were performed using the yeast
-galactosidase assay kit (Pierce) according to the manufacturer's instructions. Results were presented in Miller units ((1,000 x A420)/(T x V x A600), where A420 is the optical density at 420 nm, T is the incubation time in minutes, and V is the volume of cells in milliliters). The reported lacZ activities are averages of results from triplicate of usually three different transformants.
| RESULTS |
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32P-labeled ATP, and the radiolabeled proteins were detected by autoradiography after separating them by SDS-PAGE. Assays of a representative set of protein kinases are shown in Fig. 1A. The Tpk1 isoform of protein kinase A seemed to exhibit the strongest activity on Rgt1. The two other PKA isoforms, Tpk2 and Tpk3, also catalyzed phosphorylation of Rgt1 (Fig. 1B).
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), but glucose does not induce HXT1 and HXT3 gene expression in cells with greatly reduced PKA activity (tpkw = bcy1 tpk1w1tpk2 tpk3; tpkw1 allele encodes a functionally attenuated PKA catalytic subunit (31)) (Fig. 2). Deletion of RGT1 suppresses this defect, consistent with the idea that PKA functions through Rgt1. Deletion of any single TPK gene reduced induction of HXT1 expression by only 3050%; deletion of both TPK2 and TPK3 reduced HXT1 expression by about 75%. The TPK genes contribute significantly to regulation of the high glucose-induced HXT1 and HXT3 genes but seem to be less involved in regulation of the low glucose-induced HXT2 gene (data not shown). This might reflect the fact that PKA activity is maximal when glucose levels are high. HXT1 expression was constitutive when PKA was rendered active by eliminating its Bcy1 regulatory subunit (Fig. 3). Similarly, overexpression of any one of the TPK genes induces HXT1 expression (Fig. 3), presumably because high levels of the catalytic subunit of PKA overwhelms the Bcy1 regulatory subunit. These results suggest that PKA exerts its function through Rgt1 to effect expression of the HXT genes.
Serines in PKA Consensus Sequences of Rgt1 Are Required for Derepression of HXT1 Expression and Phosphorylation of Rgt1 by PKAIt has been previously suggested that Tpk3 has a role in modulation of Rgt1 activity. However, whether Tpk3 directly phosphorylates Rgt1 (39) has not been addressed. PKA catalyzes phosphorylation of serine or threonine in the sequence R(R/K/S)X(S/T) (phosphorylated Ser or Thr are underlined (32)). There are nine such consensus sequences in Rgt1; four of them near the N terminus have serines, Ser-146, Ser-202, Ser-283, and Ser-284, that are well conserved in the Rgt1 orthologs from Saccharomyces species and Candida glabrata (Fig. 4A). In contrast, the serines in the other five consensus sequences (Ser-96, Ser-410, Ser-480, Ser-625, and Ser-1130) are not conserved. Mutations altering the conserved serines Ser-146, Ser-202, or Ser-283 and Ser-284 resulted in approximately a 50% reduction in glucose-induced HXT1 expression (Fig. 4B). (Mutations altering the 5 non-conserved serines had no effect on HXT1 expression (data not shown).) Changing all 4 of the conserved serines (plus Ser-96) to alanine (the S5A mutation) fully prevented glucose induction of HXT1 expression (Fig. 4B) without affecting the stability of Rgt1 (Fig. 4C). Thus, the four conserved consensus sequences in Rgt1 for phosphorylation by PKA are crucial for regulation of Rgt1 function by glucose.
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Phosphorylation of Rgt1 Regulates Its FunctionIt is well known that glucose promotes phosphorylation of Rgt1 and its dissociation from the HXT gene promoters (910, 13), so we sought to determine whether PKA is responsible for this. A chromatin immunoprecipitation assay confirms that Rgt1 binds to the HXT1 promoter in cells grown on galactose but not glucose (Fig. 6A). However, Rgt1 binds to the HXT1 promoter in glucose-grown cells that lack PKA activity (tpkw), as does Rgt1 lacking the serines in its PKA consensus phosphorylation sites in glucose-grown wild-type cells (Fig. 6A). These results suggest that phosphorylation of Rgt1 by PKA in response to glucose inhibits its DNA binding activity.
Rgt1 function is regulated by an intramolecular interaction between the N terminus and middle region of Rgt1 that has been suggested to inhibit function of the DNA-binding domain of Rgt1 (30). We used a two-hybrid assay to test whether the PKA consensus phosphorylation sites of Rgt1 are necessary for this intramolecular interaction. We used as "bait" the N-terminal region of Rgt1-(1392) fused to the Gal4 DNA-binding domain and as "prey" the central region of Rgt1-(450850) fused to the Gal4 transcriptional activation domain (Fig. 6B). Interaction between these two parts of Rgt1 is induced by glucose, but the interaction was not observed if the 5 serines of the consensus PKA phosphorylation sites of Rgt1 are changed to alanine (Fig. 6B). These results suggest that PKA phosphorylates Rgt1 when glucose is available and that this is required for the Rgt1 intramolecular interaction that inhibits its DNA binding activity, thereby dissociating Rgt1 from the HXT promoters.
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| DISCUSSION |
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subunit Gpa2, and 2) the small GTP-binding proteins Ras1 and Ras2 stimulate adenyl cyclase in response to glucose (40). In these ways, the addition of glucose to yeast cells leads to an increase in the intracellular level of cAMP, which binds to the Bcy1 inhibitory subunit of PKA and dissociates it from the enzyme, thereby activating the protein kinase activity of PKA. These two routes of PKA activation seem to be redundant because deletion of GPR1 or RAS1 and RAS2 does not affect glucose induction of HXT gene expression (data not shown). Glucose induces HXT gene expression by ultimately effecting the release of the Rgt1 repressor from the HXT promoters (910, 13). We previously provided evidence that this is due to an intramolecular interaction between the N-terminal region of Rgt1 that contains its zinc cluster DNA-binding domain and the middle region of the protein (30). That intramolecular interaction requires phosphorylation of Rgt1, and our results suggest that PKA is the protein kinase responsible for this event (Fig. 6B). Mth1 and Std1 inhibit this intramolecular interaction (30). Thus, two different glucose-induced events must occur for this intramolecular interaction to take place and release Rgt1 from the HXT promoters; Mth1 and Std1 must be degraded via the Snf3-Rgt2 glucose-sensing pathway, and Rgt1 must become phosphorylated via the Gpr1-PKA glucose-sensing pathway.
Std1 does not completely disappear when glucose is added to cells because glucose induces expression of STD1 (via the Snf3/Rgt2-Rgt1 glucose signaling pathway (12, 33)). Enough Std1 could remain in glucose-grown cells to attenuate the intramolecular interaction of Rgt1, and this would dampen induction of HXT expression. This may necessitate a device to lock Rgt1 in a conformation that enables full induction of HXT expression, and we propose that PKA could provide such a device. We surmise that yeast cells take advantage of this strategy to induce different HXT genes in response to different levels of glucose. When glucose levels are low, Mth1 would be degraded, but Rgt1 would not be fully phosphorylated because PKA is not fully active in this condition. This might result in induction only of HXT genes encoding high affinity glucose transporters (e.g. HXT2). When glucose levels are high, Mth1 would be degraded, and Rgt1 would be fully phosphorylated because PKA is fully active. This would drive to completion the intramolecular interaction of Rgt1 and result in full induction of the high glucose-induced HXT genes (i.e. HXT1 and HXT3).
This is the third glucose-sensing pathway known to affect expression of the HXT genes encoding glucose transporters (Fig. 7). The Snf3/Rgt2-Rgt1 pathway is responsible for glucose induction of HXT expression. The glucose repression pathway that operates through the Snf1 protein kinase and the Mig1 transcriptional repressor contributes to regulation of HXT expression by repressing expression of MTH1 (33), which reinforces glucose-induced degradation of Mth1 and results in rapid glucose induction of HXT expression (12). Mig1 also represses expression of the HXT2 and HXT4 genes when glucose levels are high (34), ensuring that the high affinity glucose transporters encoded by these genes are only expressed when glucose levels are low. The results described here indicate that the Gpr1-Ras1/Ras2-PKA glucose-sensing pathway also contributes to regulation of HXT expression by regulating Rgt1 function. By integrating the signals generated in three different glucose-sensing pathways, yeast cells are able to respond rapidly and decisively to fluctuating levels of glucose.
| FOOTNOTES |
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1 To whom correspondence should be addressed: MFGN, Dept. of Biological Sciences, University of Southern Mississippi, 118 College Dr. #5018, Hattiesburg, MS 39406. Tel.: 601-266-4262; Fax: 601-266-5068; E-mail: jeongho.kim{at}mfgn.usm.edu.
2 The abbreviation used is: PKA, cAMP-dependent protein kinase A. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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