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J. Biol. Chem., Vol. 281, Issue 37, 27317-27326, September 15, 2006
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From the
Departments of
Biological Sciences and ¶Chemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061 and the
CR-UK Institute for Cancer Studies, School of Medicine, University of Birmingham, Birmingham B15 2TT, United Kingdom
Received for publication, June 9, 2006 , and in revised form, July 17, 2006.
| ABSTRACT |
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| INTRODUCTION |
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Membrane association is critical for the function of Rho family proteins. Isoprenylation of their C termini plays a major role in membrane anchoring, although these proteins appear to shuttle rapidly between membrane and cytosolic compartments (4). Although the mechanism of specific targeting of these GTPases to plasma versus other internal membranes is still unsolved, their subcellular localization does appear to be influenced by electrostatic membrane interactions of the PBM (5). Both phosphatidylinositol 3,4-biphosphate and phosphatidylinositol 3,4,5-triphosphate were initially proposed as Rac1 and RhoA ligands, respectively, binding preferentially to the nucleotide-free state (6). However, these phosphoinositide interactions were not detected by NMR spectroscopy or overlay assays (7), and their in vivo significance remains unclear.
To investigate the mechanism of Rac1 recruitment to the plasma membrane, we searched potential lipid ligands for Rho GTPases by liposome binding and NMR spectroscopy. We found that Rac1 preferentially interacts with phosphatidylserine (PS)-containing bilayers independently of the bound nucleotide. The PS binding site of Rac1 is located at the polybasic region, and prenylation of this motif increases the avidity for its ligand. Conversely, Cdc42 only binds PS when prenylated. Mutational analysis suggests that the PS-PBM interaction is required for Rac1' subcellular localization and GTP loading, and also triggers Cdc42-GTP formation, phosphorylation of the mitogen-activated protein kinase (MEK1) and rearrangement of the cytoskeleton. Thus, PS recognition by Rac1 through its PBM is centrally involved in cell motility and confers non-redundancy in signaling among GTPases proteins.
| EXPERIMENTAL PROCEDURES |
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C Rac1). Purification of all GST fusion proteins from Escherichia coli Rosetta cells (Novagen) on glutathione beads was performed according to the manufacturer's protocol (Amersham Biosciences). All Rho proteins were also cloned in pBAC-2cp (Novagen) and expressed using the eukaryotic baculovirus, Spodoptera frugiperda (Sf9) expression system. Prenylated Rho proteins were isolated from the membrane fraction of Sf9 cells by extraction with 0.5% CHAPS (8) and purified using Talon beads (Clontech). Purity of all proteins was over 95% as judged by SDS-PAGE gels. All purified proteins were stable in the presence of protease inhibitors as judged by mass spectrometric analysis (data not shown).
Liposome Binding AssayPhospholipids including dipalmitoyl phosphatidylcholine (PC), dipalmitoyl PS, phosphatidylinositol, phosphatidylglycerol, and dipalmitoyl PE (Avanti%20Polar%20Lipids">Avanti Polar Lipids) were prepared as a lipid film by lyophilization overnight. Lipid films were hydrated in 20 mM Tris-HCl (pH 6.8), 100 mM NaCl, 2 mM dithiothreitol at 1 mg/ml concentration and freeze-thawed 3 times. Large unillamelar vesicles were formed by extruding the lipid through a 0.1-µm filter (Nucleopore track-etch membrane, Whatman) 20 times and used immediately. Recombinant proteins were centrifuged at 44,000 rpm (TLA-45 rotor) for 20 min at 25 °C prior to the assay to remove protein aggregates. Ten micrograms of each of the proteins was added to
50 µg of liposomes. The mixture was incubated at room temperature for 1 h and then centrifuged at 44,000 rpm (TLA-45 rotor) for 10 min at 25 °C. Pellets and supernatants were analyzed by SDS-PAGE.
Nuclear Magnetic Resonance SpectroscopyNMR experiments were performed at 25 °C on Varian INOVA 600 and 500 MHz spectrometers equipped with triple resonance probes with z axis pulse field gradients. 15N-Labeled Rac1 was prepared by growing E. coli cells in M9 minimal media, with 15NH4Cl (1 g/liter) as the sole nitrogen source (9). Protein was purified by fast protein liquid chromatography over a Superdex S75 column (Amersham Biosciences). Titrations with PS/PC (30/70%) or PC (100%) large unillamelar vesicles were performed by recording a series of two-dimensional 1H,15N-heteronuclear single quantum coherence spectra of Rac1 (100 µM) at different liposome concentrations. All samples were prepared in 20 mM d11-Tris-HCl buffer (pH 6.8), 100 mM NaCl, 1 mM sodium azide, and 1 mM dithiothreitol. Chemical shift assignments of Rac1 were taken from Thapar et al. (7).
Lipid Overlay AssayLipid strips were prepared by spotting 1 µl of PS dissolved in chloroform:methanol:water (65:25:4) onto Hybond-C extra membranes (Amersham Biosciences). Membrane strips were incubated with 0.2 µg/ml of full-length Rac1 or its mutants in 20 mM Tris-HCl (pH 8.0), 150 mM NaCl, 0.1% Tween 20, and 3% fatty acid-free bovine serum albumin overnight at 4 °C. Following extensive washes with the same buffer, proteins bound to the membrane strips were probed with rabbit anti-GST antibody (Santa Cruz Biotechnology). Donkey anti-rabbit horseradish peroxidase antibody was obtained from Amersham Biosciences. Detection was carried out using ECL reagent (enhanced chemiluminescence, Pierce).
Preparation of Nucleotide Free and Bound Rac1Proteins were first depleted of nucleotide for 15 min at room temperature in a buffer containing 20 mM Tris-HCl (pH 7.4), 50 mM NaCl, 1 mM dithiothreitol, and 2 mM EDTA (6). Proteins were extensively washed with the same buffer without EDTA in 10-kDa concentrators (Millipore) and incubated in the presence of either GDP or GTP
S (100 µM) for 15 min at 37 °C under gentle agitation. Reactions were stopped with 1 mM MgCl2. Binding to PS was carried out by the lipid-membrane overlay assay.
Surface Plasmon Resonance SpectroscopySurface plasmon resonance binding experiments were performed on a BIAcore 3000 instrument using L1 chips coated with
0.5 mM mixed PS/PC (30/70%) size-calibrated liposomes. PC liposomes were used as a negative control. Prenylated and non-prenylated Rac1 or its mutants binding experiments were performed in a degassed solution containing 10 mM Tris-HCl (pH 7.4), 100 mM NaCl, and 1 mM sodium azide. This buffer was used during equilibration, association, and dissociation phases. Proteins were added to this buffer at the indicated concentrations. Regeneration of the phospholipid bilayer after the dissociation phase was carried out using 20 mM NaOH. The data were globally fit using a two-state reaction model with mass transfer (BIAevaluation 3.0 software).
Loading PS into Cell Membranes and Immunofluorescence StainingLipid vesicles containing a mixture of 70% PC and 30% PS was prepared by extrusion as described above. Growing and transfection of Chinese hamster ovary-K1 (CHO-K1) cells were performed as described (10). Briefly, 4-8 x 104 CHO-K1 cells/well were grown in 6-well plates in 2 ml of F-12 media with serum. Cells were incubated at 37 °C in a CO2 incubator until they are 50-80% confluent. For each well transfection, 0.5 µg of DNA (pCS2+(myc)6-tagged Rac1 constructs) and 40 µg of Lipofectamine reagent (Invitrogen) were combined and incubated for 5 h with F-12 media without gentamicin/serum. Following incubation, medium containing twice the normal concentration of serum was added without removing the transfection mixture. Cells were kept in this condition until Rac1 constructs were expressed (about 11 h). Fresh PC or PC/PS liposomes (100 µM) in phosphate-buffered saline were added to myc-tagged Rac1 (or its mutants)-transfected CHO-K1 cells in a culture medium deprived of serum as reported (11). Briefly, following 1 h of incubation at 37 °C, free lipid vesicles were removed by washing the cells with serum-containing medium. Cells were then incubated in normal medium at 37 °C for 2 h to allow translocation of loaded PS from the outer leaflet to the inner leaflet (11). To detect intracellular localization of either Rac1 or its mutants, cell were fixed directly with 3.7% formaldehyde and stained with Cy3-conjugated anti-myc antibody as described (10). Nuclei and actin stress fibers were detected using 4',6'-diamino-2-phenylindol and Alexa 488-phalloidin (Molecular Probes), respectively. Fluorescent images were visualized by using a Nikon Eclipse TE300 microscope and captured with a charge-coupled device camera.
PAK1 CRIB Pulldown AssayThe activity of both Rac1 and Cdc42 were assessed using the p21-binding domain (CRIB) of p21-activated kinase 1 (PAK1) (12). Adherent Rac1-transfected CHO-K1 cells (1-2 x 107) were stimulated either with PC or PC/PS liposomes as described above and lysed with cold lysis buffer (50 mM Tris-HCl (pH 7.5), 10 mM MgCl2, 200 mM NaCl, 1% Nonidet P-40, 5% glycerol, and a mixture of EDTA-free protein inhibitors) in the presence of 8 µg of GST-PAK1 CRIB for 30 min at 4 °C. The cell lysates were clarified by centrifugation at 13,600 x g for 10 min at 4 °C. Equivalent amounts of protein in each supernatant were incubated with glutathione beads for 1 h at 4 °C. Bead pellets was then centrifuged for 2 min at 1,000 x g at 4 °C and washed 3 times with 25 mM Tris-HCl (pH 7.6), 1 mM dithiothreitol, 30 mM MgCl2, 40 mM NaCl, 1% Nonidet P-40, and protein inhibitors and twice with the same buffer without Nonidet P-40. Proteins were separated by SDS-PAGE, blotted, and detected using mouse anti-myc (for Rac1) or rabbit anti-Cdc42 (for Cdc42) antibodies.
Immunoblotting AnalysisAfter transfection with the Rac1 constructs, non-stimulated and PS-stimulated CHO-K1 cells were lysed in 20 mM Tris-HCl (pH 7.4), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100, 0.5% CHAPS, 2.5 mM sodium pyrophosphate, 1 mM
-glycerophosphate, 1 mM NaVO4, and 1 µg/ml leupeptin. Extracts were sonicated and samples subjected to SDS-PAGE and transferred to polyvinylidene difluoride membranes. The membranes were blocked with 5% nonfat dry milk in 20 mM Tris-HCl (pH 7.5), 137 mM NaCl, 0.1% Tween 20, incubated with primary antibody (anti-MEK1, anti-phospho-MEK1 (Ser298) from Cell Signaling; anti-c-myc and anti-actin from Santa Cruz) overnight at 4 °C, washed, and incubated with the appropriate secondary antibody for 2 h at room temperature. All horseradish peroxidase-coupled antibodies were from Amersham Biosciences. Detection was performed using ECL reagent.
Wound Healing AssayUntransfected or transfected CHO-K1 cells with the constructs described above were seeded at high density (1.5 x 105 cells on coverslips of 13 mm diameter) and incubated for 24 h until a confluent monolayer was formed. Mytomycin C (10 µg/ml) (Sigma) was then added to inhibit cell proliferation. Wounding was performed by scraping through the cell monolayer with a pipette tip. Afterward, cells were washed with medium. Cells were induced by addition of either PC or PS/PC liposomes as described above, or lipophosphatidic acid (Avanti Lipids) as a positive control. Individual fields of the coverslip were photographed at 20 h after wounding in a Zeiss Axiovert 200M microscope.
| RESULTS AND DISCUSSION |
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Rho GTPases share a high level of homology in their amino acid sequence, despite their different effects on cell morphology and signaling. The C-terminal PBM is the most divergent region, with Rac1 presenting the most basic PBM sequence among Rho GTPases (Fig. 2B). Because PS is negatively charged, a likely candidate for direct interaction is the PBM near the CAAX box. Mutation of C-terminal residues Lys186 or Arg187 to Ala of Rac1 in the non-isoprenylated protein significantly reduced PS binding (Fig. 2C). Both mutations combined (K186A/R187A) abolished the interaction, producing the same effect as the deletion of the C-terminal region of the protein (Fig. 2C), and confirming the essential role of these residues in PS binding. Liposome binding assays confirmed the requirement of an intact PBM (Fig. 2C). Mutations at the PBM did not perturb GTP loading as tested by the PAK1 CRIB pull-down assay (Fig. 2D), and did not affect the overall structure (data not shown). Because Lys186 and Arg187 residues are conserved in Rac2, the results suggest that although they are essential, other residues are also involved in PS recognition. By analogy, plasma membrane recruitment of the Ras protein KRas4B is dependent on the net charge of its highly basic PBM (5). Thus, it is plausible that a general mechanism occurs, in which basic PBM residues, such as Lys183, Lys184, Arg185, Lys186, Arg187, and Lys188 of Rac1, form electrostatic interactions with cluster of anionic phospholipids in the plasma membrane.
To explore the regulatory role of GTP, the PS interactions of the nucleotide-bound and depleted Rac1 protein were compared. As shown in Fig. 3A, nucleotide-free Rac1 recognized PS to the similar extent as the nucleotide-bound form. This result was supported by demonstration that Rac1 mutants that are either constitutively activated (Q61L) or dominant negative (T17N) bound PS similarly to the wild type protein (Fig. 3B). This is in agreement with the observation that the GTPase activity of Rac1 is independent of the presence of PS (16). Moreover, deletion of the last eight residues in Q61L Rac1 (Q61L
C) abrogated PS binding (Fig. 3B), indicating that Rac1 activation is not sufficient for PS association. Likewise, GTP loading appears to be dispensable for the phospholipid binding by the Cdc11 GTPase (17). Thus, recruitment to PS-containing membranes may control the activities of Rac1 through co-localization with its effectors rather than through GTP-dependent regulation of its lipid interactions.
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sheet flanked by six
helices (20). The PBM forms an exposed and apparently unstructured extremity of the folded domain. Based on our CD and NMR data, which do not indicate major structural changes, we propose that the flexible C-terminal element of Rac1 is the primary mediator of the interaction with PS-containing bilayers. Rho proteins regulate the actin cytoskeleton at different levels. Whereas RhoA regulates focal adhesion assembly and actin stress fiber formation, Cdc42 triggers the formation of filopodia and focal complexes in the cell periphery and the direction of the migration; and Rac induces membrane ruffling and lamellipodia formation at the plasma membrane upon growth factor stimulation (21). In CHO-K1 cells, Rac1 was diffusely distributed in the cytosol (Fig. 4A), in agreement with previous observations (22). The activated Q61L Rac1 induced robust localization to and ruffling of the plasma membrane, although some of the protein was also cytoplasmic (Fig. 4B). In contrast, T17N Rac1 was only cytoplasmic (Fig. 4C). Interestingly, mutation in the PS-binding site of Rac1 induced a punctuate cytoplasmic distribution of the protein, suggesting vesicular compartmentalization (Fig. 4D). This observation is consistent with the proposal that the CAAX motif targets proteins to endomembrane systems, whereas the additional presence of the PBM provides plasma membrane localization (23).
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Activated Rac1 interacts with several downstream effectors and elicits various cellular responses. When bound to GTP, Rac1 induces phosphorylation of PAK1 (25), which in turns phosphorylates Thr292 and Ser298 of MEK1 in vivo (26). Stimulation of CHO-K1 cells with PS induced GTP loading into Rac1 as monitored by the PAK1 CRIB pulldown assay (Fig. 5A). This suggests that PS promotes the activation of Rac1 by guanine nucleotide-exchange (GEF) proteins. Activation of Cdc42 by Rac1/PS signaling was also investigated. PS stimulation of Rac1-transfected CHO-K1 cells led to the formation of Cdc42-GTP, as monitored by the PAK1 CRIB pulldown binding assay (Fig. 5B). In contrast, mutation of Rac1 PS binding sites abrogated Cdc42 activation (Fig. 5B). These results correlate with the ability of prenylated Cdc42 to bind PS liposomes in vitro (Fig. 2A) and filopodia formation of Rac1-transfected PS-stimulated cells (Fig. 4, E and F). Thus, we propose that redistribution of PS promotes the activation of both Rac1 and Cdc42 GTPases.
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The effects of the Rac1 mutations on endogenous Rac1 activity can be explained based on observations taken from Ras studies (27). The S17N Ras, which acts similarly as T17N Rac1, is able to bind to GEFs and therefore competes with endogenous Ras for binding to these factors. Because S17N is in excess over the endogenous Ras and cannot interact with downstream proteins, it generates a dead-end by sequestering GEFs from endogenous Ras. Subcellular sequestration is another mechanism that regulates GEF activity (28). Because the Rac1 PBM is not critical for GEF binding (29), we propose that the K186A/R187A Rac1 mutant sequesters GEFs in the cytosol. This mutation on Rac1 impairs PS binding (Fig. 2C) and reduces GTP loading by GEFs (Fig. 5A). Thus, the K186A/R187A Rac1-GEF complex prevents GTP binding by the PS-stimulated endogenous Rac1. As Rac1/PAK signaling modulates MEK1 phosphorylation (30), sequestration of GEFs by the PS-binding Rac1 mutant prevents endogenous Rac1-mediated MEK1 activation.
Similar to Rac1, the Raf-1 kinase binds to PS-containing liposomes through its cysteine-rich domain (31). Raf-1 is able to act synergistically with both Rac and Cdc42 to activate the extracellular signal-regulated protein kinases (ERKs) through mechanisms involving PAK1 phosphorylation of MEK1 at Ser298 (32). Surprisingly, the PS-dependent MEK1 signaling does not appear to be ERK-related, because no PS-dependent phosphorylation of ERK1/ERK2 could be detected (data not shown). We envision at least three possible scenarios that would explain our observations. First, subcellular re-localization triggered by PS/Rac1 signaling may impede MEK-dependent ERK activation by altering segregation of either component. Second, ERK phosphorylation exists but is transient, and it is due to the activation of a specific PS/Rac1-dependent phosphatase. Last, substrates other than ERK are targeted by MEK in a Rac1/PS-dependent fashion. In this regard, mitotic-specific activation of MEK1 has been shown to be uncoupled from ERK activation by a regulatory mechanism mediated by cyclin B/Cdc2 (33). Alternative MEK1-dependent, ERK-independent mechanisms have been also suggested in both insulin stimulation of the SOS protein kinase (34) and during the hyperosmotic response in Hep-G2 cells (35).
Given the role of Rac1 in cell migration (21), we tested whether CHO-K1 cell migration into wounds was stimulated by PS (Fig. 6, A and C). Cell migration control was monitored by stimulation with the well established chemotactic agent lysophosphatidic acid (Fig. 6B) (36). The transfection of wild type and Q61L Rac1 proteins similarly induced migration of CHO-K1 cells into wounds (Fig. 6, A and C). Interestingly, activated Q61L Rac1 did not close wounds in the absence of phospholipid stimulation (Fig. 6, A and C). This is in agreement with the hypothesis that PS activates Cdc42 to stimulate filopodia formation, which is required for cell migration (21). Thus, loading of GTP into Rac1 is not sufficient for cell migration and PS may be needed to recruit Rac1 to specific regions at the plasma membrane for migratory signaling. In contrast, expression of mutant Rac1, which is either compromised in PS interaction (K186A/R187A) or constitutively inactive (T17N), blocked cell migration (Fig. 6, A and C). This result concurs with the observation that overexpression of the isolated PBM inhibits cell migration (24). Thus, the cell migratory function of Rac1 is PS-dependent and is mediated by its unique PBM.
Membrane phospholipids such as PS play important roles not only structurally but also as signal transducers both inside and outside of cells. The distribution of PS is determined by the action of specific transporters that promote the active shuttling of PS across of the membrane bilayer. In addition to the well known role of PS in early stages of apoptosis (37), transient PS redistribution at the plasma membrane has been reported in other circumstances, including modulation of the activities of membrane proteins in lymphocytes (38), sperm capacitation (39), and blood coagulation cascade (40). Moreover, it has been recently reported that the PS-binding protein tyrosine phosphatase-MEG2 is transiently translocated to the plasma membrane after PS stimulation (11), reflecting the PS redistribution. As Rac1 GTPase activity is independent of PS (16), it is plausible that PS recognition by Rac1 exerts a regulatory function by subcellular localization rather than nucleotide exchange. In this study, we provide evidence that PS recognition by the PBM of activated Rac1 is required for cell morphological changes that underpin cell migration. Because the role of Rac1 in cancer involves stimulation of cell migration (41), further mechanistic studies of PS-mediated functions of Rac1 may provide new opportunities to inhibit metastasis.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental Fig. S1. ![]()
1 To whom correspondence should be addressed. Tel.: 540-231-0974; Fax: 540-231-3255; E-mail: capellut{at}vt.edu.
2 The abbreviations used are: PBM, polybasic motif; CHO-K1, Chinese hamster ovary K1; MEK1, mitogen-activated protein kinase 1; NMR, nuclear magnetic resonance; PAK1, p21-activated kinase 1; PC, phosphatidylcholine; PS, phosphatidylserine; ERK, extracellular signal-regulated protein kinases; CHAPS, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid; GST, glutathione S-transferase; GTP
S, guanosine 5'-3-O-(thio)triphosphate; GEF, guanine nucleotide-exchange factor. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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