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J. Biol. Chem., Vol. 281, Issue 38, 28039-28047, September 22, 2006
Maintenance of Nitric Oxide and Redox Homeostasis by the Salmonella Flavohemoglobin Hmp*
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| ABSTRACT |
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| INTRODUCTION |
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) and nitric oxide (NO·) in turn can be converted to other reactive oxygen species or reactive nitrogen species (RNS) such as hydrogen peroxide (H2O2), hydroxyl radical (·OH), nitrogen dioxide (NO2·), peroxynitrite (ONOO), dinitrogen trioxide (N2O3), and nitrosothiols (RSNO). Enzymes responsible for the metabolism and detoxification of reactive oxygen species, including catalases, superoxide dismutases, and peroxidases, have been extensively studied and shown to contribute to bacterial virulence in experimental infections (24). However, although some bacterial enzymes capable of RNS detoxification have been characterized, their importance in pathogenesis has not been directly demonstrated.
The enteric pathogens such as Salmonella enterica serovar typhimurium possess a number of enzymes with the ability to metabolize RNS. The flavohemoglobin Hmp detoxifies NO· by an O2-dependent denitrosylase mechanism, producing
under aerobic or microaerobic conditions or by the slower O2-independent reduction of NO· to N2O (57). The flavorubredoxin NorV can reduce NO· to N2O under anaerobic or microaerobic conditions (8, 9) and is induced during experimental infection of macrophages (10). The GSH-dependent formaldehyde dehydrogenase AdhC has S-nitrosoglutathione (GSNO) reductase activity (11), which can limit levels of S-nitrosoglutathione formed during nitrosative stress. Last, the periplasmic cytochrome c nitrite reductase NrfA, which reduces
to NH3, may also be able to directly reduce NO· (12).
The biochemistry of Hmp has been extensively characterized. As one of bacterial globins, Hmp binds NO· at its heme ligand. Structural analysis of flavohemoglobins has also revealed binding domains for FAD and NAD(P) in the C-terminal portion of the molecule (13). This reductase domain is believed to transfer electrons from NAD(P)H to the ferric heme iron ligand via FAD, ultimately resulting in reduction of the liganded NO· to form a heme-bound nitroxyl anion (NO) equivalent (7, 14, 15). NO/HNO is alternatively converted to
or N2O in the presence or absence of O2, respectively.
Biochemical studies of the Escherichia coli Hmp enzyme have revealed some evidence that Hmp might exacerbate oxidative stress under selected circumstances. In the absence of NO, Hmp binds O2. NADH oxidase activity of Hmp can then generate
at the heme, and further dismutation or reduction could produce H2O2 (16, 17). Moreover, by consuming NADH and reducing free flavins, Hmp has the ability to reduce external electron acceptors, including ferric iron (Fe3+) (1820). Woodmansee and Imlay (21) have demonstrated the ability of reduced flavins generated by the NADPH-dependent flavin oxidoreductase Fre to promote oxidative damage by reducing intracellular free iron. Homology between Fre and the C-terminal portion of Hmp (22) as well as the ability of Hmp to act as a ferrisiderophore reductase (18) supports a possible role of Hmp in reducing intracellular iron under physiological conditions.
To examine the importance of RNS metabolism to Salmonella virulence in mice, we have constructed Salmonella mutant strains lacking Hmp, NorV, AdhC, or NrfA. Infections of mice with these strains show that the flavohemoglobin Hmp plays the most important role of these enzymes in detoxifying host-derived RNS produced during Salmonella infections. We have also used site-specific mutations to demonstrate the contribution of the heme and flavin binding domains of Hmp to NO· denitrosylase activity and the potentiation of oxidative stress. Finally, we have elucidated the mechanism by which hmp transcription is regulated in response to nitrosative stress and intracellular iron concentration.
| EXPERIMENTAL PROCEDURES |
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Construction of Mutant Bacterial StrainsBacterial strains and plasmids used in this study are listed in supplemental Table 1. S. enterica serovar typhimurium wild-type 14028s was used as a parent strain for all mutant constructs. Protocols for Salmonella genetic manipulations were as described previously (25). Deletion mutations were constructed using the
-Red recombinase method (26) with modifications of DNA primers designed for the construction of deletion mutations (supplemental Table 2). Mutant construction was completed by transducing each mutation into a clean wild-type background and confirming the mutated allele by PCR. General molecular biological techniques were performed according to standard protocols (27). To construct an nsrR complementing plasmid, the nsrR gene was amplified from S. typhimurium chromosomal DNA using Pfu polymerase (Stratagene, La Jolla, CA) with primers 5'-CAGTGTGATACATTGCTGTG-3' and 5'-AGGATCTAGAGACATTGAGGTTC-3' and cloning into pBAD30.
Mouse Virulence AssayFemale 68-week-old C56BL/6, 129Xi/SvJ (The Jackson Laboratory, Bar Harbor, ME) and C3H/HeN (Charles River Laboratory, Wilmington, MA) mice were used for the determination of Salmonella virulence. C57BL/6 iNOS/ mice were bred at the University of Washington and University of Colorado Health Science Center animal facilities according to the animal care and use regulations of each institution. To inhibit iNOS expression in C3H/HeN mice, L-NIL (L-N6-1-iminoethyl-lysine; 500 µg ml1) was administered with drinking water throughout the experiment. Salmonella cells were grown overnight in LB medium and diluted in phosphate-buffered saline (PBS; Difco). For acute infections, 500 colony-forming units (cfu) and 2000 cfu were administered intraperitoneally to C56BL/6 and C3H/HeN mice, respectively. For competition assays in chronically infected mice, strains were mixed at a 1:1 ratio of hmp mutant to wild type before oral administration of 2 x 105 cfu to 129Xi/SvJ mice. Infected mice were sacrificed at designated time intervals for isolation of mesenteric lymph nodes, which were homogenized in PBS, diluted, and plated onto selective and non-selective media for quantitation of cfu. Each virulence assay was performed a minimum of two times with 10 mice per group.
Macrophage Killing AssayPeritoneal exudate cells from wild-type C57BL/6 or congenic iNOS/ mice were harvested 4 days after intraperitoneal inoculation of 1 mg ml1 sodium periodate, as described previously (28). The peritoneal exudate cells were resuspended in RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum (Gemini Bio-Products, Calabasas, CA), 1 mM sodium pyruvate, 10 mM HEPES, and 2 mM L-glutamine (all from Sigma-Aldrich). Macrophages were selected by adherence to a 96-well plate and cultured for 48 h at 37 °C in a 5% CO2 incubator. Selected groups of macrophages were incubated with 200 units ml1 murine interferon-
(Invitrogen) 16 h before infection. Macrophages were challenged with S. typhimurium opsonized with 10% normal mouse serum at a multiplicity of infection of 10:1 and allowed to internalize the bacteria for 15 min. Extracellular bacteria were removed by washing with prewarmed medium containing 6 µg ml1 gentamicin. The Salmonella-infected macrophages were lysed 20 h after challenge, and the surviving bacteria were enumerated on LB agar plates. Results are expressed as percent survival. Nitrite production by macrophages in response to infection was determined by the Griess reaction (29).
Measurement of NO· ConsumptionWild-type S. typhimurium, hmp mutant S. typhimurium, and wild-type S. typhimurium heated to 95 °C for 10 min were resuspended in buffer (A590
2) before the addition of NO· (
3 µM). NO· consumption was measured in 1 ml of PBS with 20 µM diethylenetriamine pentaacetic acid using an NO· electrode (World Precision Instruments, Sarasota, FL).
Measurement of S-NitrosothiolsSNO levels in bacterial cells were measured essentially as described (30). Salmonella grown in minimal medium were treated with 2 mM GSNO for 1 h before lysis by sonication. Lysates were cleared by centrifugation at 20,000 x g for 10 min and either treated or not treated (total XNO) with HgCl2 to deplete S-nitrosothiols. Quantities of total S-nitrosothiols in the lysates were measured by photolysis-chemiluminescence (31). Standard curves were derived using S-nitrosoglutathione, and data were normalized to total protein content.
Measurement of Growth KineticsGrowth kinetics were measured by determining the optical density at 600 nm (A600 nm) at 37 °C with agitation on a BioScreen C Microbiology Microplate reader (Growth Curves USA, Piscataway, NJ). Cells grown overnight in LB medium were diluted in PBS to A600 nm = 0.1 before inoculating equal quantities into minimal E glucose (0.2%) medium containing various NO· donors.
Cloning and Site-directed Mutagenesis of the S. typhimurium hmp GeneThe hmp gene was amplified from S. typhimurium 14028s chromosomal DNA using Pfu polymerase (Stratagene) with primers 5'-TCTCTAGATTTTCACATAAAGGAAGCA-3' and 5'-AACGGGCGTTCGCCTTACCGATA-3'. The purified product was digested with restriction enzyme XbaI and cloned into pBluescript SK+ (Stratagene). Identity of the cloned insert was confirmed by DNA sequencing and performing phenotypic complementation in hmp mutant bacteria before use as the template plasmid for site-directed mutagenesis according to the method of (32) with modifications. Briefly, two complementary mutagenic primers and Pfu DNA polymerase were used to amplify DNA from the template plasmid. The PCR product was treated with restriction enzyme DpnI to specifically cut methylated parental plasmid DNA sequences before purification, ligation, and transformation into Electromax DH10B competent cells (Invitrogen). Each mutated construct was confirmed by sequencing. Primers used for site-directed mutagenesis were as follows: H85A, 5'-AATCGCGCAGAAGGCCACCAGCTT-3' and 5'-TTTTCTACCGCCGGCAGCAAC-3'; Y206A/S207A, 5'-TTCCGCCAAGCTGCACTGACCCGT-3' and 5'-CACCTGATGCGCAAAACCTTC-3'.
Hydrogen Peroxide Killing AssayBacterial cells grown overnight in LB broth were diluted 1:1000 into fresh broth and reincubated. Log-phase cells (A600 nm
0.30.5) were challenged with 2 mM H2O2 at a density of 106 cfu ml1 in LB medium at 37 °C. 3 mM KCN was added for 30 min before H2O2 challenge to inhibit respiration (this treatment did not affect bacterial survival over the 30-min time period). Viable counts were measured by dilution in M9 minimal medium (0.2% glucose) containing catalase (200 unit ml1) and plating onto LB agar at timed intervals. Percentage survival was calculated by dividing cfu after challenge by cfu before challenge and multiplying by 100.
Measurement of Heme ContentThe heme content of cells expressing wild-type and mutant Hmp were determined by incubating cell lysates containing 10 µg of total cell protein in PBS buffer containing 0.2% 3,3'-dimethoxybenzidine (dianisidine, Sigma-Aldrich) and 0.3% H2O2 at room temperature (33). The absorbance at 450 nm was read after 1 h of incubation using an Optimax microplate reader (Molecular Devices, Sunnyvale, CA). After subtracting the absorbance of samples carrying empty vector, the relative heme content of mutant Hmp proteins was calculated by normalizing absorbance with that of the wild-type Hmp sample.
RNA Purification and Quantitative Reverse-transcriptase Real-time PCRLevels of hmp mRNA were measured under various conditions including low or high iron and after NO· exposure. Log phase bacteria (A600 nm
0.40.6) were treated with 200 µM 2,2'-dipyridyl, 200 µM FeCl3, or 1 mM Spermine-NONOate and incubated for 30 min. Transcription was stopped by adding a 2x volume of the RNA Protect reagent (Qiagen, Valencia, CA), and RNA was purified using the Qiagen RNA purification kit. Quantitative real-time Reverse transcription-PCR reaction was performed as described previously (34). Primer sets used were 5'-CTTGACGCACAAACCATCGCTA-3' and 5'-CGGGTTATGCGTAAACATACGG-3' (hmp), 5'-CAGGCGGTTAGTGGTGAACGTC-3' and 5'-GCCGCCTGGGGTTCTACTATGA-3' (iroN), and 5'-GTGAAATGGGCACTGTTGAACTG-3' and 5'-TTCCAGCAGATAGGTAATGGCTTC-3' (rpoD). Each sample was independently tested three times and assayed in duplicate during each run.
| RESULTS |
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Mice that are highly resistant to Salmonella infection can be persistently infected with wild-type S. typhimurium in mesenteric lymph nodes (36). To determine whether Hmp is required for persistent Salmonella infection, we challenged 129Xi/SvJ mice with oral inocula containing equal quantities of wild-type and isogenic hmp mutant bacteria. At intervals after infection, mice were sacrificed and competition index was calculated by enumerating bacterial load in mesentric lymph nodes. The hmp mutant strain was not significantly different in competitive index at day 5 (0.465 ± 0.189) but was 100-fold less abundant than wild-type bacteria after 98 days of infection (0.017 ± 0.019). These results demonstrate that the flavohemoglobin Hmp promotes Salmonella virulence during chronic infection as well as during acute lethal infection of mice.
An hmp Mutant S. typhimurium Strain Is Unable to Metabolize Nitric Oxide, Leading to S-Nitrosylation of Proteins and Cell FilamentationThe rate of NO· consumption by hmp mutant and wild-type bacteria cultured in minimal medium was measured using an NO·-sensitive electrode. Wild-type bacteria rapidly consumed NO·, whereas hmp mutants consumed NO· as slowly as heat-inactivated wild-type cells, demonstrating that Hmp is responsible for virtually all NO· decomposition in Salmonella under these aerobic experimental conditions (Fig. 2A). Accordingly, the growth of hmp mutant bacteria was severely impaired in the presence of NO·-donor compounds spermine-NONOate (37), diethylamine triamine-NONOate (37), and GSNO (24) (Fig. 2B). Furthermore, hmp mutant cells treated with GSNO accumulated approximately twice as much S-nitrosylated proteins compared with wild-type (Fig. 2C). GSNO has previously been shown to induce cell filamentation in association with the SOS response, suggesting that nitrosative stress arrests DNA replication (38). Microscopy revealed that hmp mutant bacteria exhibit filamentation after overnight culture in GSNO concentrations (500 µM) insufficient to induce filamentation of wild-type cells (Fig. 2D). Collectively, these observations indicate that Hmp is responsible for the majority of NO· detoxification in Salmonella and can promote bacterial growth during nitrosative stress.
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Overexpression of Hmp in the Absence of Nitrosative Stress Increases Salmonella Susceptibility to Hydrogen Peroxide by a Flavoreductase- and Iron-dependent MechanismHmp overexpression from a high copy number plasmid (pBluescript) complemented the NO· resistance of an hmp mutant strain but slowed bacterial growth under aerobic conditions in the absence of nitrosative stress (data not shown) in association with cell filamentation (Fig. 4A), indicating that increased Hmp expression might have deleterious effects. The Conserved Domain Data base (40) revealed homology between the C-terminal portion of Hmp and the flavin reductase Fre. Common ferric iron reductase activity of Hmp and Fre (18) also suggested functional conservation. Under conditions of NADH excess, the Fre flavin reductase of E. coli reduces FAD to FADH2, which can in turn act as a ferric iron reductant and drive the Fenton reaction (21). For example, in non-respiring cells, a fre mutation protects cells from iron-dependent oxidative damage, and fre overexpression enhances susceptibility to hydrogen peroxide (21). We, therefore, determined whether overexpression of Hmp affects Salmonella susceptibility to hydrogen peroxide. Log-phase cells grown in iron-rich LB media were treated with cyanide to inhibit respiration and challenged with H2O2. As shown in Fig. 4B, within 30 min of H2O2 challenge the survival of Hmp-overexpressing cells was reduced more than 10-fold compared with cells harboring a control plasmid. Treatment with the chelators deferoxamine or 2,2'-dipyridyl rescued the cells, indicating that the potentiation of oxidative stress susceptibility by Hmp overexpression is iron-dependent. Concentrations of total iron in cells with and without Hmp overexpression were not significantly different (data not shown), indicating that Hmp overexpression does not alter iron content. To examine the contribution of Hmp heme and flavoreductase domains to hydrogen peroxide susceptibility, cells overexpressing mutant Hmp proteins were challenged as described above. A Y206A-S207A flavoreductase mutation largely restored hydrogen peroxide resistance to wild-type levels, whereas an H85A heme mutation had no effect (Fig. 4C). To confirm that His-85 is required for heme binding, a colorimetric heme assay was performed with lysates prepared from Hmpoverexpressing cells. The heme content of bacteria overexpressing H85A mutant Hmp was dramatically reduced in contrast to those overexpressing the wild-type or Y206A-S207A mutant Hmp proteins (Fig. 4D). These results indicate that the FAD binding domain but not the heme domain is required for Hmp-mediated hypersusceptibility to oxidative stress in intact bacterial cells.
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To determine whether hmp expression is affected by NO·, iron availability, and the Fur repressor, quantitative real time reverse transcription-PCR was used to measure steady state hmp mRNA levels. As shown in Fig. 5A, hmp transcription is induced by either iron limitation with 200 µM 2,2'-dipyridyl or exposure to 1 mM spermine-NONOate. The addition of excess iron to 2,2'-dipyridyl-treated cells restored repression of hmp transcription. However, iron-dependent regulation of hmp transcription did not require Fur. The well characterized iroN gene (44) provided a positive control for Fur-dependent gene regulation. A recent comparative genomic analysis of NO-responsive transcriptional networks predicted that a [2Fe-2S] cluster-containing IscR homolog (YjeB, NsrR) represses hmp transcription in most enterobacterial species (45). Therefore, an nsrR deletion mutation was constructed in S. typhimurium. Transcription of hmp was found to be derepressed 1000-fold by the nsrR mutation in iron-rich LB medium, comparable with mRNA levels observed in spermine-NONOate-treated wild-type cells (Fig. 5A). Regulation by 2,2'-dipyridyl was also abolished by the nsrR mutation, as predicted for an IscR homolog. Expression of the nsrR gene on a plasmid repressed hmp transcription in nsrR mutant cells, but this repression was completely abrogated by treating cells with spermine-NONOate (Fig. 5B). These findings suggest that iron limitation and NO· control hmp expression by reversible inactivation of the NsrR repressor in S. typhimurium.
| DISCUSSION |
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A previous study demonstrated that the fungal Fhb1 flavohemoglobin is required for virulence of Cryptococcus neoformans (49), indicating that the detoxification of host-derived NO· is a function conserved among flavohemoglobins produced by diverse pathogenic microorganisms. By demonstrating an unequivocal contribution of Hmp to Salmonella virulence, we have been able to expand significantly upon an earlier report that Hmp modestly enhances Salmonella survival in cultured macrophages (50). Moreover, our finding that Hmp is required for persistent infection of Salmonella in mice suggests that host-derived RNS are important during microbial persistence as well as acute infection.
Single domain globins are produced by a small number of bacterial species such as Vitreoscilla sp., Campylobacter jejuni, and Mycobacterium bovis (51, 52). But the role of these globins is unclear. More frequently, bacterial globins contain an additional reductase domain at the C terminus, which resembles flavin reductase or ferredoxin-NADP reductase with binding sites for FAD and NAD(P)H. The current study has demonstrated that site-specific mutation of either the FAD-binding site (Y206A-S207A) or proximal His ligand of heme (H85A) abrogates the NO·-detoxifying function of the Salmonella flavohemoglobin Hmp. The Tyr-206 and Ser-207 residues contact the FMN moiety and influence the electrochemical potential of the prosthetic FAD group (53), which subserves the reduction of heme-bound NO· to NO. That is, the flavin reductase domain is essential for electron delivery from FAD to the heme ligand whether NO· is converted to
under aerobic or microaerobic conditions or to N2O under anaerobic conditions (7). Of note, on the basis of relative activity, Hmp has been suggested to make only a minor contribution to NO· reduction in comparison to the flavorubredoxin NorV (8). However, a recent comparison of the NO· susceptibility of hmp and norV mutant E. coli strains suggests that both are functionally important under anaerobic conditions (54), whereas only the Hmp is functionally important under the microaerobic conditions that likely predominate in vivo (7).
In the absence of NO·, Hmp can transfer electrons from NAD(P)H to external electron acceptors such as O2, dihydropteridine, ferrisiderophores, ferric citrate, Fe(III)-hydroxamate, and cytochrome c (1820, 55, 56). Purified E. coli Hmp can generate superoxide and hydrogen peroxide by a heme-dependent mechanism (16, 17), suggesting one possible pathway by which Hmp might contribute to oxidative stress.
However, the present study suggests an alternative mechanism; that is, promotion of ferric iron reduction by reduced flavins. Ferric reductase activity of Hmp was originally detected in an analysis of soluble ferrisiderophore reductases (18) and is attributable to the reduction of flavins (19) that can reduce ferric iron and thereby accelerate Fenton chemistry (21). Therefore, Hmp might enhance oxidative stress both by producing superoxide at the heme ligand and by reducing FAD at the flavoreductase domain. Structural studies have shown that heme ligand in Hmp is stabilized by His-85, Tyr-29, and Gln-53 (13). The proximal F8 histidine (His-85 in Salmonella Hmp) in the heme pocket was found to be absolutely conserved in an alignment of 700 vertebrate and nonvertebrate globins and shown to be essential for heme binding in the protoglobin of Aeropyrum pernix (57). In this study an H85A mutation was found to abolish NO· detoxification (Fig. 3) and heme binding by Salmonella Hmp (Fig. 4D) but not the enhancement of susceptibility to hydrogen peroxide, whereas a Y206A-S207A mutation in the FAD binding domain had little effect on heme binding but abrogated the pro-oxidant effects of Hmp (Fig. 4C). These observations suggest that the increased susceptibility of Hmp-overexpressing cells to hydrogen peroxide under non-respiring conditions results primarily from the heme-independent reduction of flavins at the flavoreductase domain, where electrons are transferred from NADH to free FAD.
In the presence of NO·, inhibition of bacterial respiration (58) can increase intracellular pools of NAD(P)H (21), which might enhance oxidative damage unless electrons are directed to ferric-nitrosyl Hmp (7) to promote reaction of heme-bound NO· with O2 (Fig. 6, pathway 1). In this fashion Hmp can actually ameliorate oxidative stress. However, bacterial respiration can also be inhibited in the absence of NO·, e.g. by antimicrobial peptides produced by host cells (59). Under such circumstances, elevated levels of NAD(P)H can lead to reduction of Hmp-bound FAD. Intermolecular transfer of these reducing equivalents could promote oxidative injury. Consequently, expression of Hmp in the absence of NO· may increase FAD- and iron-dependent damage by hydrogen peroxide (Figs. 4 and 6, pathway 2).
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| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental Tables 1 and 2. ![]()
1 Present address: Dept. of Microbiology and Immunology, University of California at San Francisco, San Francisco, CA 94143. ![]()
2 To whom correspondence should be addressed: Depts. of Microbiology and Laboratory Medicine, University of Washington School of Medicine, 1959 Pacific St NE, Box 357242, Seattle, WA 98195-7242. Tel.: 206-221-6770; Fax: 206-616-1575; E-mail: fcfang{at}u.washington.edu.
3 The abbreviations used are: iNOS, inducible nitric-oxide synthase; GSNO, S-nitrosoglutathione; RNS, reactive nitrogen species; PBS, phosphate-buffered saline; cfu, colony-forming unit; NONOate, diazenium diolate. ![]()
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