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J. Biol. Chem., Vol. 281, Issue 43, 32057-32064, October 27, 2006
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-D-ribonucleoside Triphosphate*

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1
From the
Department of Biochemistry, Medical University of Gdansk, 80-211 Gdansk, Poland,
Purine Research Unit, Guy's Hospital, London SE9 RT, United Kingdom, ¶University College London Institute of Child Health, London WC1N EH, United Kingdom, ||Department of Organic Chemistry, Medical University of Gdansk, 80-416 Gdansk, Poland, **Department of Organic Chemistry, University of Gdansk, 80-952 Gdansk, Poland, 
Laboratory of NMR Spectroscopy, Chemical Faculty, Gdansk University of Technology, 80-952 Gdansk, Poland, 
Heart Science Centre, Imperial College London, Harefield UB9 6JH, United Kingdom
Received for publication, August 7, 2006
| ABSTRACT |
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-D-ribonucleoside triphosphate (4PYTP), a structure indicating association with metabolism of the oxidized nicotinamide compounds. Subsequently, we demonstrated formation of 4PYTP in intact human erythrocytes during incubation with the chemically synthesized nucleoside precursor 4-pyridone-3-carboxamide-1-
-D-ribonucleoside (4PYR). We noted preferential accumulation of monophosphate of 4PYR (4PYMP) over 4PYTP as well as a decrease in erythrocyte ATP concentration during incubation with 4PYR. Both the 4PYR phosphorylation and ATP depletion were blocked by an inhibitor of adenosine kinase. Plasma concentration of 4PYR was detectable but very low (0.013 ± 0.006 µM) in contrast with the high daily urine excretion of this compound (26.7 ± 18.2 µmol/24 h) in healthy subjects, indicating much greater renal clearance than other nicotinamide metabolites, nucleosides, or creatinine. We also noted a 40-fold increase in 4PYR plasma concentration in patients with chronic renal failure (0.563 ± 0.321 µM). We suggest that 4PYTP formation in the erythrocytes is a hitherto unknown process aimed at sequestering potentially toxic 4PYR in a form that could be safely transported and subsequently released and excreted during passage of erythrocytes through the kidney. | INTRODUCTION |
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The chemical nature of all physiological nucleotides is believed to be well characterized (2). Therefore, it was very surprising for us to note an unknown nucleoside triphosphate that was present at high levels in the erythrocytes of patients with renal failure but also at low concentrations in the erythrocytes of healthy subjects (7, 8). A correlation between concentrations of this unknown nucleotide in erythrocytes and the plasma concentration of a nicotinamide catabolite N-methyl-2-pyridone-5-carboxamide (Met2PY)2 suggested that both compounds could be related (7, 8). However, further comparison of chemical properties indicated that this is not the case. The present study was undertaken to fully characterize this novel nucleotide, to search for its possible precursors and to suggest its possible function.
| MATERIALS AND METHODS |
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Anion Exchange Chromatography with Mass DetectionThe analytical system used was an LCQ-Advantage or LCQ-Deca XP mass detector linked to a Surveyor chromatography system with an in-line Agilent 1050 or 1100 diode array detector. The chromatographic procedure used a chemically stable anion-exchange column (Phenomenex; 3 µm, Luna-NH2, 150/2 mm). Buffer A was 5 mmol/liter ammonium acetate; buffer B was 30 mM N',N',dimethylhexylamine/50 mM ammonium hydroxide delivered at a flow rate of 0.2 ml/min. A convex gradient profile from 100% buffer A to 100% buffer B in 12 min was used for elution with re-equilibration time of 5 min with 100% buffer A. The unknown nucleotide peak was recognized by its characteristic UV spectrum. The mass detector was operated in negative ion mode. A Thermo-Finnigan Electrospray ion source was used with a 5-kV cone voltage setting and an arbitrary nebulizing gas (nitrogen) flow set at 35%. The heated capillary was maintained at 220 °C. Ion optics parameters were optimized for ATP with standard instrument routines. Helium was used as the collision gas. A collision energy of 28% was used for analysis of the fragmentation pattern.
Reversed-phase Chromatography with Mass DetectionThe analytical systems described above incorporating diode array and mass detection were used for characterization and quantitative analysis of the nucleoside and base in extracts and post-reaction mixtures. The reversed-phase method employed a Hypersil BDS 3-µm column, 150/2 mm. Buffers were running at a flow rate of 0.2 ml/min. Buffer A was 5 mmol/liter ammonium formate; the mobile phase B was acetonitrile. A linear gradient from 100% buffer A to 50% B in 12 min was used for elution, followed by 2 min of 50% B and 5 min of re-equilibration at 100% A. Nucleosides and nucleobases were identified by their characteristic UV absorption spectra (range: 210310 nm) and retention time compared with the standards. The mass detector was operating in the positive ion mode. A Thermo-Finnigan Electrospray ion source was used with a 5-kV cone voltage setting and an arbitrary nebulizing gas (nitrogen) flow set at 35%. The heated capillary was maintained at 250 °C. Ion optics parameters were optimized for adenosine with standard instrument routines. Helium was used as the collision gas. A collision energy of 35% was used to obtain the fragmentation pattern of the nucleoside under investigation.
NMR and Infrared SpectroscopyA Varian Unity plus 500 MHz NMR spectrometer was used for nucleoside and base analysis with 1H NMR in D2O as the solvent at room (22 °C) temperature and with chemical shifts assigned according to the residual signal of water assuming its position at 4.64 parts/million. The purified nucleoside was also analyzed by infrared spectroscopy. Full details are provided in the supplemental material.
Chemical Synthesis of Pyridone DerivativesChemical synthesis of pyridone derivatives was performed as previously described. 4-Pyridone-3-carboxamide (12) was prepared from commercially available 4-chloropyridine-3-carboxylic acid and ribosylated under Vorbrüggen's protocol (13). In the case of 4-pyridone-2-carboxamide (1416), 2-picolinic acid was used as a starting material. Details of the chemical synthesis procedures, methods for structural characterizations, and the spectral properties of the intermediates and final products are provided in the supplemental material.
Incubation of Healthy Human Erythrocytes with 4PY and 4PYRIncubation of healthy human erythrocytes with 4PY and 4PYR was performed as we have described previously (9, 17). Erythrocytes of healthy humans were used for this experiment and were obtained and washed as described above. The erythrocytes were suspended in Hepes-buffered Krebs medium at 20% hematocrit. 4PY or 4PYR was added at 301000 µM concentration as indicated in the legend to Fig. 2. Incubation was carried out for 3, 6, or 12 h at 37 °C. Incubation was terminated by the addition of trichloroacetic acid, and extraction and analysis was completed as described under "Materials and Methods."
ReagentsAlkaline phosphatase was obtained from Amersham Biosciences. Chemicals for the synthesis were obtained from Lancaster and Aldrich. All commercially available nucleotides, nucleosides, and bases were obtained from Sigma. Chromatographic columns were obtained from Phenomenex. HPLC grade solvents and buffer salts were obtained from VWR.
Statistical AnalysisData are presented as mean ± S.D. Student's t test or one-way analysis of variance followed by the Dunett test was used to compare two or more groups, respectively. p < 0.05 was considered a significant difference.
| RESULTS AND DISCUSSION |
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-D-ribonucleoside triphosphate (4PYTP). Liquid chromatography/mass spectrometry analysis of the chromatographic peak corresponding to the novel nucleotide revealed a negative ion at m/z = 509 corresponding to a molecular weight of 510. Similar analysis of ATP or GTP showed ions m/z =506 and 522, respectively, as expected. The fragmentation pattern obtained in MS2 and MS3 modes suggested that it is the base that is unique, as only fragments larger than ribosetriphosphate were different in m/z ratio to fragments generated in MS2 and MS3 mode from ATP (not shown). This molecular weight was consistent with the suggestion that an oxidized metabolite of nicotinamide is the base constituent of the novel nucleotide, assuming that ribose is the sugar.
To obtain the nucleoside constituent for analysis, we treated the HPLC effluent fractions containing the novel nucleotide pooled from several runs with alkaline phosphatase, an enzyme that nonspecifically releases nucleosides from nucleotides. The UV spectrum of the nucleoside was identical to the parent nucleotide. Liquid chromatography/mass spectrometry analysis of the nucleoside peak revealed a positive ion at m/z = 271 corresponding to a molecular weight of 270, and analysis of its fragments in MS2 mode revealed ions at m/z = 139 and m/z = 122 that corresponded to sequential neutral loss of ribose and an amino group. Analysis with infrared spectroscopy and 1H NMR revealed further details of the structure. Our chemically synthesized 4-pyridone-3-carboxamide-1-
-D-ribonucleoside (4PYR) was identical with the isolated biological compound with regard to chromatographic retention time, UV spectrum, mass, 1H NMR, and infrared spectra.
Liquid chromatography/mass spectrometry analysis of the base peak obtained by acid hydrolysis of the nucleoside revealed a positive ion at m/z = 139 corresponding to a molecular weight of 138. MS2 mode analysis revealed an ion at m/z = 122 corresponding to neutral loss of an amino group. However, we had an insufficient amount of isolated material to perform heteronuclear two-dimensional NMR analysis. To confirm its identity, we therefore synthesized several of the most likely isomers suggested by 1H NMR analysis, including 4-pyridone-3-carboxamide (4PY), 4-pyridone-2-carboxamide (4KP), and 2-pyridone-5-carboxamide (2PY). These chemically synthesized compounds were then compared with the base obtained from the novel nucleotide with regard to UV spectrum, chromatographic retention time, and NMR spectrum. This indicated that synthesized 4PY is identical to the biologically isolated material.
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-D-ribonucleoside (4PYR) has long been identified in human urine and plasma with the most commonly used name ribosylpyridin-4-one-3-carboxamide (PCNR) (2123). Furthermore, the two anomers
-1 and
-1 of 4-pyridone-3-carboxamide ribonucleoside have been described (24), but the UV and NMR spectra of
anomer were different from the nucleoside we isolated and synthesized. In addition, isomers such as 2-pyridone-5-carboxamide-1-
-D-ribonucleoside were also described (23). Changes in plasma 4PYR concentration or urine excretion received special attention in the context of cancer treatment (23) and were found to predict early death in patients with active AIDS (22). Increase in plasma 4PYR could reflect cell damage, but on the other hand, it may cause elevation of 4PYTP in cells of the immune system and contributes to the loss of immune function. Interestingly, nicotinamide is known to delay disease progression in AIDS (25). Because high dose nicotinamide therapy emerges as an effective treatment in a variety of other pathological conditions such as diabetes, brain ischemia, or renal failure (2629), it is important to take into account the effect of this treatment on cellular 4PYTP concentration, as this may be related to therapeutic or toxic effects.
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2% of the ATP level. Massive accumulation of 4PYTP was observed in patients with renal failure, up to 10% of ATP on average or up to 30% in advanced chronic renal failure, which is consistent with our previous suggestions (7, 8). Fig. 2 presents the results of the incubation of healthy human erythrocytes with 4PY or with 4PYR. Incubation with 4PYR resulted in progressive accumulation of 4PYTP, whereas no change in 4PYTP was observed during incubation with 4PY or in controls (Fig. 2A). Formation of 4PYTP from 4PYR in the erythrocytes was dependent on adenosine kinase activity as it was inhibited by its specific inhibitor 5'-iodotubercidin (Fig. 2A).
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Significance of 4PYTP and Its PrecursorsOur discovery of 4PYTP in human cells has several potential implications. The presence of this compound in the erythrocytes of healthy subjects at significant concentrations indicates that this is part of a normal physiological mechanism. 4PYTP may be necessary for specific metabolic processes. However, our data indicating that 4PYR phosphorylation into the monophosphate (4PYMP) occurs much faster than its subsequent metabolism into 4PYTP (Fig. 2) seems to contradict this possibility. This rapid nucleoside phosphorylation and slow further metabolism within the erythrocytes suggests that this process is designed to remove 4PYR from the circulation and not to make 4PYTP. 4PYR could be toxic for nucleated cells by interference with ATP metabolism, by disruption of RNA or DNA synthesis, either directly or after phosphorylation, or through the potential for making an oxidized NAD by analogy with tyrazofurin and benzamide riboside. One evidence for potential toxicity is shown in our Fig. 2B, demonstrating decrease in erythrocyte ATP concentration during incubation with 4PYR. Although this occurred at relatively high concentrations, it may occur in vivo during prolonged exposures at lower levels or in specific cell types. Trapping of 4PYR in phosphorylated form within erythrocytes could prevent this potentially deleterious process.
Our results demonstrated massive accumulation of 4PYR in the plasma of patients with chronic renal failure (Table 2). This could be a major factor that contributes to the accumulation of 4PYTP in the erythrocytes in patients with chronic renal failure. However, we made several additional important observations. The relative increase in plasma 4PYR in subjects with chronic renal failure by far exceeded that of Met4PY (Table 2) or any other known metabolite, including creatinine. We noted a >50-fold increase in plasma concentration of 4PYR comparing our group of patients with advanced renal failure to the controls, whereas increase in Met4PY was <10-fold, similar to the relative increase in plasma creatinine in these patients (data not shown). Another important observation was a disproportionately high excretion of 4PYR in urine, compared with its plasma concentration in healthy subjects. Our measurements of both the plasma concentration of 4PYR and its urinary excretion are close to earlier estimates of these values (2124). Although plasma levels and urine excretion of 4PYR in our study were not performed in the same subjects to allow exact renal clearance calculations, even estimates indicate that this value is almost one order of magnitude greater than in the case of other nicotinamide metabolites or nucleosides. Renal clearance was found to be close to creatinine clearance in this study for Met4PY (data from Table 2), in our previous report for Met2PY (10), and in studies of other authors for pseudouridine (33). Such a massive accumulation of 4PYTP in the erythrocytes and 4PYR in the plasma of patients with chronic renal failure to levels that by far exceed what could be expected from reduced renal filtration suggests that there is an additional mechanism that enhances 4PYR excretion in healthy people. We could speculate that, during passage of erythrocytes through the kidney, there is a reverse process in which 4PYTP is broken down to 4PYMP and further to 4PYR. High local concentration of 4PYR would ensure its effective excretion (Fig. 3). Such a mechanism could explain the disproportionately high excretion of 4PYR in urine in contrast to its extremely low plasma concentration in healthy adults. We could not exclude an active kidney excretion mechanism for 4PYR, but such a process has never been described for any nucleoside. An important practical aspect of such significant changes in plasma 4PYR in renal failure is that this measurement could become very sensitive and an early marker of renal dysfunction. Although this hypothesis still needs further experimental evidence, we propose that formation of 4PYTP in human erythrocytes is an element of a novel excretion pathway for oxidized nicotinamide metabolites.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental material. ![]()
1 To whom correspondence should be addressed: Heart Science Centre, Imperial College London, Harefield UB9 6JH, UK. Tel.: 44-1895-828829; Fax: 44-1895-828864; E-mail: r.smolenski{at}ic.ac.uk.
2 The abbreviations and trivial names used are: Met2PY, N-methyl-2-pyridone-5-carboxamide; Met4PY, N-methyl-4-pyridone-3-carboxamide; 4PY, 4-pyridone-3-carboxamide; 4PYR (PCNR), 4-pyridone-3-carboxamide-1-
-D-ribonucleoside; 4PYTP, 4-pyridone-3-carboxamide-1-
-D-ribonucleoside triphosphate; 2PY, 2-pyridone-5-carboxamide; 4KP, 4-pyridone-2-carboxamide; HPLC, high performance liquid chromatography. ![]()
3 Synesiou, E., Fairbanks, L. D., Simmonds, H. A., Slominska, E. M., Smolenski, R. T., and Carrey, E. A., submitted for publication. ![]()
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