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J. Biol. Chem., Vol. 281, Issue 51, 39002-39013, December 22, 2006
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From the Institute of Immunology and Infection Research, School of Biological Sciences, Ashworth Laboratories, King's Buildings, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, Scotland, United Kingdom
Received for publication, May 4, 2006 , and in revised form, September 26, 2006.
| ABSTRACT |
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| INTRODUCTION |
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Gene regulation can also operate post-transcriptionally, either at the level of RNA processing, mRNA stability, translational efficiency, protein localization, or turnover (1). The extent of post-transcriptional control of gene expression differs between different genes, networks, cells, and organisms. One group of organisms that has an unusual emphasis on post-transcriptional control is the kinetoplastid protozoa, comprising the important human pathogens, Trypanosoma brucei, Trypanosoma cruzi, and Leishmania sp. (2). These organisms, among the most evolutionarily ancient eukaryotes, are unusual in that their genome is organized into long polycistronic transcription units with tens of genes being coordinately transcribed from distant, as yet unidentified, promoters (3). Such co-transcribed gene clusters do not seem, in general, to be organized as co-regulated operons; instead adjacent genes can show differential gene expression, for example in different life-cycle stages. This places the emphasis of gene regulation in these organisms almost entirely at the post-transcriptional level. However, although the kinetoplastids conserve the conventional eukaryotic machinery for mRNA turnover (4), little is known about the specific trans-acting factors that govern developmental events at the level of gene expression. Moreover, transcriptional control has only been observed for two protein-coding transcription units in T. brucei: those encoding the variant surface glycoprotein gene (in bloodstream forms of the parasite) and procyclin genes, which encode a protein coat on the forms of the parasite found in its tsetse fly vector (reviewed in Ref. 2). In contrast to the remainder of trypanosome transcription units these are unique in being transcribed by RNA polymerase I (5, 6).
Differentiation between bloodstream and tsetse-midgut (procyclic) forms of T. brucei entails a large number of fundamental changes in these unicellular protozoa (7). In addition to the aforementioned surface antigen exchange, these include changes in cell morphology (8), organelle development and activity (9), metabolism (10, 11), and cell-cycle control (1214). Usefully, if differentiation is initiated with a subtype of the bloodstream parasite population that accumulates to near homogeneity at the peak of each parasitemia (i.e. stumpy forms), then cell differentiation is almost completely synchronous in the population (15). This has allowed a mapping of the events in this developmental pathway, thus revealing a high order of temporal and spatial regulation. It has also allowed the identification of molecules transiently enriched during this process. One such protein, TbZFP1, has been found to be important for repositioning of the kinetoplast (an elaborated mitochondrial genome) from the posterior end of the cell to a position midway between the nucleus and cell posterior (16, 17). This is one of the major morphological events that characterize differentiation between bloodstream and procyclic forms and is mediated by posterior outgrowth of the trypanosome microtubule corset (8). A related protein, TbZFP2, also generates a procyclic stage-specific morphological phenotype when overexpressed and is required in bloodstream forms for efficient differentiation, as revealed by transcript-specific RNAi3 (16).
TbZFP1 and TbZFP2 are members of a family of proteins characterized by their possession of the zinc finger motif C78C5C3H (CCCH) and small size (<150 amino acids). Although TbZFP1 and -2 are unique to kinetoplastids, the CCCH motif is an RNA binding zinc finger found in a range of eukaryotic proteins involved at all levels of post-transcriptional gene expression control (1821). In particular, the mammalian tristetraprolin (TTP) family of proteins recognize AU-rich elements in the 3'-untranslated region of mRNAs causing regulated instability (18), whereas in Caenorhabditis elegans regulated control of translation and mRNA localization during embryonic development is conferred by POS1 (22), MEX3 (23), and PIE-1 (19). Consistent with this, the homologue of TbZFP1 in T. cruzi has been shown to bind RNA and interact with identified regulatory RNA elements that control developmental gene expression (24). Notably, TbZFP1 and -2 also contain protein-interaction domains with TbZFP2 possessing a WW motif closely related to one of those found in E3 ubiquitin ligases.
The recent completion of the genome sequence for three kinetoplastids reveals an unusual number of CCCH proteins encoded in each organism, with 65 predicted CCCH proteins encoded in T. brucei, compared with 12 in Schizosaccharomyces pombe (4). Among this set, a third small CCCH protein has been identified, which enhances trypanosome life-cycle differentiation. Moreover, analysis of the interactions of TbZFP3 in vivo demonstrates its capacity to complex with both TbZFP1 and TbZFP2. This supports a modular model for functional interactions among this unusual protein family, each of which has been implicated in the regulation of differentiation events. Finally, we demonstrate that TbZFP3 exhibits a procyclic stage-specific association with polyribosomes despite its constitutive expression through the life cycle and that this association is necessary for the expression of phenotype. This supports a role for this unique protein family in the post-transcriptional control of developmental events in the trypanosome life cycle.
| EXPERIMENTAL PROCEDURES |
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Plasmid constructs were each generated in the trypanosome expression vector pHD451 (30). Deletion and mutation of TbZFP3 were carried out either via the Stratagene mutate-a-base mutagenesis kit or by a PCR mutagenesis strategy. Complete details of plasmid constructions in this report, and associated primers, are available from the authors upon request.
Northern and Western Blotting, Immunoprecipitation, and Polysome FractionationRNA was prepared from bloodstream or procyclic forms using an RNeasy RNA isolation kit (Qiagen), and RNAs were resolved on 1% formaldehyde gels. Hybridization was carried out using digoxigenin-labeled Ribo-probes with post hybridization washes being carried out at 68 °C, 0.1x SSC. Signal detection was via chemiluminescence using CDP-Star (Roche Applied Science) as a reaction substrate.
Protein extracts were prepared from 1 x 106 bloodstream or procyclic forms in Laemmli sample buffer. Samples were transferred to nitrocellulose membranes via electroblotting, and effective transfer was verified by Ponceau staining. Blots were blocked with 5% powdered milk in phosphate-buffered saline overnight and then incubated with 1/500 dilution (in 5% milk in phosphate-buffered saline) of anti-TbZFP3 antibody, this being raised against the peptide antigen N-DSSQMQQVGHDVPPMA-C in rabbits (by Eurogentec, Belgium). After incubation with a 1/5000 dilution of anti-rabbit IgG-horseradish peroxidase conjugate (Dako), signals were detected via chemiluminescence.
For immunoprecipitation, 15 x 108 cells were pelleted and then snap frozen before resuspension in 0.5 ml of IP-150 lysis buffer (10 mM Tris-Cl, pH 8, 150 mM NaCl, 1% Nonidet P-40, 0.5 mM EDTA). After 2530 strokes in a Dounce homogenizer, the cell extract was cleared by microcentrifugation (10,000 x g for 10 min at 4 °C) and used directly for immunoprecipitation, or centrifuged at 100,000 x g in a Beckman TLA100.3 rotor to yield a S100 supernatant or pellet. For immunoprecipitation cell extracts were incubated at 4 °C 1 h overnight with antibody (1:500), or with antibody preincubated with the peptide antigen (40 µg) to which it was raised (as a negative control). Washed protein G beads were then incubated with the extract for a further 1 h and pelleted by centrifugation at 10,000 x g for 10 min, yielding the flow-through. The beads were washed 69 times with IP-150 lysis buffer, and then bound proteins were extracted into boiling Laemmli sample buffer. For RNA immunoprecipitation, the same procedure was used with RNA being isolated in IP-150 lysis buffer plus 1% SDS at 65 °C, and then purified by phenol/chloroform extraction and ethanol precipitation. RNA retrieved from each sample was divided into two reverse transcription reactions using dT18Anchor (GCGCCGGCGCCTCAGCG) primer at 42 °C for 1 h. Equivalent quantities of cDNA obtained from all samples was amplified using the primers 5'-EP1 GGTGCTGCAACGCTGAAATCTGTTGC, or Actin 5'-GTATAGCGTGTGGATTGGCGGTTCC in combination with dT18Anchor at 65 °C for up to 35 cycles.
For polysome fractionation 0.51 x 109 cells were incubated for 10 min with 100 µg/ml cycloheximide and then centrifuged and resuspended in 25 ml of phosphate-buffered saline containing cycloheximide and washed once. The cells were then resuspended in 1 ml of polysome buffer (20 mM Tris-Cl, pH 7.5, 120 mM KCl, 2 mM MgCl·6H2O, 1 mM dithiothreitol, 22 µM leupeptin, with 2 µl of RNasin per milliliter) containing cycloheximide, centrifuged at 1,000 x g, resuspended in 0.5 ml of polysome buffer, and subjected to 20 strokes in a Dounce homogenizer with Nonidet P-40 being added to 1.2%. The lysate was cleared by centrifugation at 1,000 x g. The lysate was then fractionated on a 1550% sucrose gradient at 240,000 x g in a Beckman SW40Ti rotor, and fractions were collected using a peristaltic pump connected to an AKTA Basic high-performance liquid chromatograph and fraction collector, with RNA concentration being monitored at 254 nm.
Cell Image Acquisition and Morphometric AnalysisCells were processed for immunofluorescence as previously described. Kinetoplast-posterior measurements were taken using Scion image 1.62. Cell images were captured using a Zeiss Axioscop 2 and processed using Adobe Photoshop CS.
Yeast Two-hybrid AnalysisThe Matchmaker system 3 (Clontech) was used throughout, and protocols were followed according to the manufacturer's instructions with the following exceptions: the LexA DNA binding domain plasmid pSTT91 (25) was digested with EcoR1/BamH1to allow for in-frame ligation of the relevant TbZFP coding region. The activation domain plasmid pGADT7 was created using an EcoR1/XhoI digestion allowing the insertion of the appropriate TbZFP open reading frame. Co-transformation of 1 µg of both these fusion plasmids into the L40 yeast strain (26) was achieved using the high efficiency polyethylene glycol/lithium acetate method (27), and double transformants were selected on plates lacking Leu and Trp. Activation of the His3 reporter gene by reconstitution of the GAL4 transcription factor encoded in the fusion proteins was characterized by growth on plates lacking Leu/Trp/His/Ade. Activation of the
-galactosidase reporter gene was observed by replica-plating the colonies onto nylon membrane (Amersham Biosciences) on a YPDa plate, incubating for 16 h, and then performing a colony lift assay (28).
| RESULTS |
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The previously characterized differentiation regulator TbZFP1 is silenced in bloodstream forms at the protein level but is transiently elevated during differentiation to procyclic forms where expression is then retained (16, 17). In contrast, TbZFP2 is expressed equally in bloodstream and procyclic forms and exhibits uniform expression throughout synchronous differentiation between stumpy and procyclic forms (16). To address whether TbZFP3 is regulated during the parasite life cycle, we examined the mRNA and protein levels for this gene in bloodstream and procyclic forms. Fig. 1B demonstrates that this 390-bp-coding region is contained within an mRNA of
1.9 kb that is expressed equally in slender and stumpy bloodstream forms and in procyclic forms. To verify that the gene was translated into protein and to examine its expression profile, an anti-peptide antibody was raised to the sequence N-DSSQMQQVGHDVPPMA-C, this being located at the extreme C terminus of TbZFP3 protein. When reacted with protein derived from bloodstream monomorphic forms and procyclic forms, a band was detected at the predicted molecular mass for TbZFP3 (14 kDa) in each life-cycle stage, and at approximately equal levels, consistent with the RNA profile (Fig. 1B). The profile of TbZFP3 protein expression was also assayed during synchronous differentiation between bloodstream stumpy forms and procyclic forms, after culture in SDM-79 medium at 27 °C containing 6 mM cis-aconitate (Fig. 1C). This demonstrated approximately equivalent expression throughout differentiation with no evidence for a transient elevation in expression during this synchronous transition. This matched the expression profile of TbZFP2 but differs from TbZFP1, which is elevated in expression level around 48 h through differentiation (16). Therefore, TbZFP3 is consistently expressed in both bloodstream and procyclic forms and during synchronous differentiation between these forms.
Ectopic Expression of TbZFP3 Induces Enhanced DifferentiationPrior knockdown of TbZFP2 in bloodstream forms by RNAi had resulted in decreased efficiency of differentiation as assessed by gain of the insect-stage-specific antigen, EP procyclin (16). This implicated TbZFP2 in the control of early differentiation events, contrasting with TbZFP1, which appears to act later in the differentiation program (17). To determine whether TbZFP3 also had a role in developmental control, we initially attempted RNAi for this molecule in bloodstream forms. Although viable cell lines were generated using several available RNAi vectors, effective reduction of TbZFP3 protein was not achieved (a maximum reduction of 60% was observed, data not shown). However, cell lines were generated in which tetracycline-regulated ectopic overexpression of TbZFP3 was possible. Specifically, a copy of TbZFP3 encoding a C-terminal Ty1 epitope tag (denoted TbZFP3-Ty) was inserted into the trypanosome expression vector pHD451 (30) and transfected into T. brucei 427 monomorphic bloodstream forms, which express the tetracycline repressor protein. The resulting cell lines were then induced to express TbZFP3-Ty by the addition of tetracycline, this being monitored by Western blotting using the TbZFP3-specific anti-peptide antibody allowing simultaneous detection of the endogenous and transgenic protein. Fig. 2B (Day 0 samples) shows inducible ectopic expression of TbZFP3-Ty in bloodstream forms was achieved, generating a combined 1- to 2-fold overexpression of TbZFP3 compared with wild-type cells.
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-tubulin in the trypanosome cytoskeleton (data not shown). However, unlike with ectopic TbZFP2 expression, where nozzle formation was entirely restricted to cells with 1 kinetoplast and 1 nucleus (i.e. G1 and S phase cells), in cells expressing ectopic TbZFP3-Ty
15% of cells with an extended posterior had segregated their kinetoplast. This is indicative of cell cycle progression into G2, consistent with a similar phenotype observed upon RNAi ablation of the cyclin, CYC2 (31).
The manifestation of the nozzle morphology provided a convenient and quantifiable phenotypic assay with which to dissect important domains in TbZFP3. Specifically we wanted to evaluate whether the WW domain and CCCH RNA binding domain in TbZFP3 were essential for morphological extension. Therefore, we generated a series of cell lines in which either the WW or CCCH domain in TbZFP3 were deleted from the ectopically expressed protein, or in which a single amino acid change was introduced to mutate the CCCH motif to the sequence CCAH. Finally, we generated a cell line in which the Ty tag was absent from the transgenic protein thereby ensuring that phenotypic effects were a result of the native protein and not the introduction of the tag. Fig. 4A shows that in each case the ectopic proteins were effectively expressed in the transgenic cell lines. The relative expression between induced and uninduced samples varied somewhat, but in each the level of the induced protein expression was similar. Having verified effective and comparable expression levels for each protein, we then assayed the degree of morphological extension by measuring the kinetoplast to posterior dimension in 100 cells in each population. This analysis, shown in Fig. 4B, demonstrated that, whereas the presence or absence of the Ty tag was not important in nozzle formation, deletion of the WW or CCCH domain, or introduction of a mutation to disrupt the CCCH domain, each significantly abrogated nozzle formation. Thus ectopic expression of either native or Ty-tagged TbZFP3 generated a mean kinetoplast-posterior dimension of 10.31 µm (±0.35 µm (S.E.)) and 9.52 µm (±0.24 µm) respectively, whereas the values generated for each mutant were:
WW, 5.24 µm (±0.21 µm),
CCCH 5.40 µm (±0.21 µm), and CCAH, 5.88 µm (±0.19 µm), with these approximating to the kinetoplast-posterior dimension in wild-type procyclic forms of 5.41 µm (± 0.18 µm). We conclude that the CCCH and WW domains in TbZFP3 are both individually important for generation of the nozzle phenotype.
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The data in Fig. 5 indicate that TbZFP1 is able to directly interact with TbZFP2 and -3, this evidenced by the production of LacZ and activation of nutritional markers on TRP, LEU, HIS, and ADE plates (2DB+1AD and 3DB+1AD, Fig. 5). Moreover, this interaction is mediated by the WW motif alone, because deletion of this motif in TbZFP2 (2DB
ww+1AD, Fig. 5) or TbZFP3 (3DB
ww+1AD, Fig. 5) abolishes the interaction of each with TbZFP1. Although a weak potential interaction was observed between the TbZFP2-LexA DNA BD fusion and the TbZFP3-Gal4AD fusion (2DB+3AD, Fig. 5), this was not reciprocated when the bait and prey were reversed and is likely to be artifactual. Thus, there appears to be no direct interaction between TbZFP2 and TbZFP3 and we found no evidence that these proteins can homodimerize. However, TbZFP1 can interact with TbZFP2 or TbZFP3 with the WW protein binding motifs being essential in this.
Although two-hybrid analysis can prove informative for direct protein interactions in vitro, it was also important to validate potential interactions between these proteins in vivo. Therefore, the ability of the antibody against TbZFP3 to co-immunoprecipitate TbZFP2 and TbZFP1 was investigated in procyclic cell extracts, with specificity being verified by blocking with the peptide antigen used to raise the antibody. Fig. 6A demonstrates that TbZFP1, -2, and -3 were each co-immunoprecipitated with anti-TbZFP3 antibody and that this was efficiently blocked by the peptide immunogen. These experiments confirm that TbZFP1 can interact directly with TbZFP2 and TbZFP3 in vitro and that all three proteins can be co-immunoprecipitated in vivo suggesting their involvement in overlapping or the same protein complex(es).
Cell Fractionation of TbZFP3 Reveals Stage-specific Association with PolyribosomesTo analyze further the cellular location and interactions of TbZFP3, the distribution of this protein among different cellular compartments was investigated by cell lysis and differential detergent extraction. This resolved trypanosome proteins into cytosolic, nuclear, organellar vesicles/plasma membrane, or cytoskeletal fractions. Fig. 6B demonstrates that the majority of TbZFP3 co-fractionated with cytosolic proteins in both bloodstream and procyclic forms, with a small proportion fractionating with cell organelles/plasma membrane, this most probably representing some cytosolic contamination of this fraction. This distribution was matched by TbZFP2. Consistent with a cytosolic location, immunofluorescence of TbZFP3 in procyclic forms (fixed by paraformaldehyde in the presence of 0.1% Triton X-100) revealed a uniform staining pattern through the cell, without concentration in any recognizable organelle (data not shown).
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The stage-specific association of TbZFP3 with polyribosomes prompted us to further determine whether ectopic expression of this protein perturbed its normal associations with the translational apparatus in either bloodstream or procyclic forms. Thus, we examined the distribution of endogenous and ectopic TbZFP3 in either transgenic procyclic forms (where the nozzle phenotype is generated) or in bloodstream forms (which exhibit enhanced differentiation). More specifically, TbZFP3 was expressed in either procyclic forms for 48 h (coinciding with the appearance of nozzle cells in the population) or in a bloodstream line that can generate division-arrested intermediate/stumpy forms when grown in mice (33). These cells were grown for 8 days in mice that had been supplied with doxycycline in their drinking water (to induce TbZFP3-Ty expression), and then parasites were harvested for analysis of the distribution of TbZFP3 on sucrose gradients. Fig. 8B demonstrates that in both bloodstream and procyclic forms the ectopically expressed and endogenous TbZFP3 exactly co-sedimented, this being polysomal for procyclic forms and non-polysomal for the bloodstream forms. We conclude that ectopically expressed TbZFP3 does not alter the normal polysomal distribution of this protein, association of the translational apparatus being enriched in procyclic forms regardless of the expression of ectopic TbZFP3.
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WW,
CCCH, or CCAH mutants were expressed in procyclic forms, the ectopic protein fractionated into the non-polysomal or monosomal region of the gradient, whereas endogenous TbZFP3 and the ribosomal marker P0 each remained polysome-associated. This demonstrates that TbZFP3 associates with polysomes only if its WW or CCCH domains are intact. This exactly correlates with the capacity of each mutant to induce morphological extension as determined in Fig. 4.
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WW,
CCCH, and CCAH), and the expression of these was induced for 3 days by growth in tetracycline. Thereafter, each was induced to initiate differentiation with cis-aconitate, and the percentage of procyclin expressers quantified over the following 72 h by immunofluorescence. Fig. 10 shows that, whereas ectopic expression of wild-type TbZFP3 enhanced differentiation as expected, the mutants with a disrupted WW or CCCH domain each differentiated with an equivalent efficiency to wild-type parental cells. This demonstrated that the phenotypes generated by ectopic expression of TbZFP3 in both procyclic forms (nozzle formation) and bloodstream forms (enhanced differentiation) were each dependent upon the integrity of the WW and CCCH domain in the protein. Moreover, manifestation of these phenotypes exactly correlated with the ability of each protein to associate with polysomes. This provides evidence for a cause-and-effect relationship between the function of TbZFP3 and its association with the translational apparatus.
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| DISCUSSION |
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and granulocyte macrophage-colony stimulating factor in macrophages is observed as are changes in the abundance of at least two interleukin transcripts (reviewed in Ref. 34). These changes are caused by binding of TTP to AU-rich elements in the 3'-untranslated region of target mRNAs, resulting in their destabilization. In addition to TTP family proteins, a number of different classes of CCCH-containing molecule with a diversity of functions have subsequently been characterized in eukaryotic cells. These include the regulation of flower development by HUA1 (35) and FES1 (36), proteins that protect against viral infection by destabilization of retroposon transcripts (37), components of the mRNA processing machinery (U2AF, CPSF30, suppressor of sable), and a number of developmental regulators in C. elegans, which function via temporal and spatial regulation of maternal mRNAs at several levels (transcription, mRNA processing, RNA localization, and translation) (19, 38, 39). The binding of CCCH-containing proteins to RNA is normally dependent upon the presence of two tandemly arranged CCCH zinc finger motifs (40, 41), these being at precisely conserved spacing. In contrast to this organization, TbZFP3, like the previously identified TbZFP1 and TbZFP2, possesses only a single CCCH domain. Although one CCCH domain is sufficient for RNA binding in vitro (27),4 we investigated whether TbZFP1, -2, or -3 could interact to generate a multicomponent complex (possibly an mRNP complex) possessing more than one CCCH finger. Initially, yeast two-hybrid studies confirmed the ability of TbZFP2 and -3 to interact with TbZFP1, this being mediated via the WW domain in each protein. This matches the findings of a related study with an analogous protein identified in T. cruzi (29), although in contrast to that study we did not find evidence that TbZFP2 or TbZFP3 could homodimerize. More importantly, when we investigated the association of TbZFP3 with TbZFP1 and TbZFP2 in vivo via co-immunoprecipitation we found evidence for direct or indirect interaction between each protein, providing evidence that these proteins can co-associate in the cell.
Analysis of the polysomal distribution of TbZFP3 revealed that this protein (and TbZFP2)4 showed stage-enriched association with the translational apparatus. Based on this surprising observation, we propose that TbZFP3 operates as a trans-acting regulator to translationally activate (or repress, if the protein acts on a negative regulator) specific mRNA subsets in a developmentally regulated manner. This scenario is compatible with the phenotypes observed in both procyclic and bloodstream forms when TbZFP3 is ectopically overexpressed. Thus, in procyclic forms, posterior extension to generate nozzle forms represents an exaggerated manifestation of the normal morphological changes that occur during differentiation. In bloodstream forms, TbZFP3 ectopic expression would have no consequence until differentiation was initiated, and the protein associates with the translational apparatus. As in established procyclic forms, this would then result in the robust expression of procyclic characteristics (e.g. procyclin expression and kinetoplast positioning), this being manifested as more efficient differentiation. Therefore, direct or indirect regulation of differentiation markers such as EP procyclin is possible, and indeed we found that TbZFP3 is able to co-immunoprecipitate EP procyclin transcripts. This does not indicate direct binding, although TcZFP1 from T. cruzi (related to TbZFP1 in T. brucei) can directly interact with a procyclin regulatory element in vitro (24). Consistent with the association of TbZFP3 with polysomes only after the initiation of differentiation to procyclic forms, we observed no pre-expression of mRNA or protein for EP procyclin or the procyclic-specific cytoskeletal protein CAP 5.5 upon TbZFP3 ectopic expression in bloodstream forms.5
Several RNA-binding proteins regulate developmental pathways via translational control. Examples include the Drosophila Bruno protein that interacts with the Oskar embryonic mRNA and silences its translation via sequestration into silencing particles (42). Similarly, in C. elegans the CCCH protein POS-1 controls embryonic development via translational regulation of the maternal mRNA glp-1 (39). In another case, PIE-1 regulates the association of mRNAs with stress granules, such that they are repressed (38). The paucity of transcriptional control, and the polycistronic organization of the genome, make post-transcriptional mechanisms the most important level for gene regulation in trypanosomes. To date, most attention has focused on the role of differential mRNA stability for stage-regulated transcripts. However, it is increasingly clear that translational control is also a major component of regulated gene expression in trypanosomatids. This matches the emerging picture for genes in other organisms in which developmental processes are controlled via pre-existing mRNAs being held in a translationally inactive state (34, 43) often by sequestration into ribonuclear granules (P bodies).
TbZFP3, like TbZFP2, is constitutively expressed. However, its association with other RNA-binding proteins may modify its activity or substrate specificity. One of these modulators may be TbZFP1. TbZFP1 is synthesized only after the initiation of differentiation between bloodstream and procyclic forms such that association with TbZFP2, or TbZFP3 (or a complex containing both proteins), may alter their target specificity. This proposed modularization of function may allow these proteins to control the expression of distinct cohorts of genes in different life-cycle stages, or at stages through development, in a form of post-transcriptional operonic regulation (44). A general perturbation of protein translation induced by TbZFP3 expression is ruled out by the observation that P0 does not redistribute into monosomes upon ectopic TbZFP3 expression. Furthermore, general translational inhibition in procyclic forms by hygromycin does not induce comparable nozzle formation.5
The TbZFP family of RNA-binding proteins are present in kinetoplastid parasites but not in other eukaryotes for which there is complete genome sequence information. Indeed, in kinetoplastids there is over five times the number of CCCH proteins as in yeast. It is likely that the unique reliance upon post-transcriptional control by the trypanosome genome necessitates this plethora of novel RNA-binding proteins, which permit stringent and rapid control of gene expression during the parasite life cycle. Although many of the core components of the gene expression machinery in these parasites are conserved with their hosts and vectors, it is those components that are not present in other organisms that provide the key to understanding the unique complexity of gene regulation in these organisms. The TbZFP family of CCCH proteins provides an excellent route into dissecting the molecular interactions required for coordinating a developmental pathway almost completely dependent on the post-transcriptional control of gene expression.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental text and Fig. S1. ![]()
1 Both authors contributed equally to this work. ![]()
2 To whom correspondence should be addressed. Tel.: 44-131-651-3639; Fax: 44-131-651-3670; E-mail: keith.matthews{at}ed.ac.uk.
3 The abbreviations used are: RNAi, RNA interference; TTP, tristetraprolin; E3, ubiquitin-protein isopeptide ligase; BD, binding domain; AD, activation domain. ![]()
4 P. Walrad and K. Matthews, unpublished observations. ![]()
5 A. Paterou, P. Walrad, P. Craddy, K. Fenn, and K. Matthews, unpublished observations. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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