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J. Biol. Chem., Vol. 281, Issue 52, 39776-39784, December 29, 2006
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1
From the
Dipartimento di Biochimica e Biotecnologie Mediche, Università di Napoli Federico II, CEINGE Biotecnologie avanzate, 80131 Napoli,
Dipartimento di Biologia e Patologia Cellulare e Molecolare, Università di Napoli Federico II, 80131 Napoli, and the ¶Istituto Nazionale dei Tumori Fondazione Pascale, 80131 Napoli, Italy
Received for publication, June 14, 2006 , and in revised form, October 31, 2006.
| ABSTRACT |
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1 genes. Endogenous transcripts of these antioxidant genes accumulate as a consequence of Nrf2 overexpression or exposure to electrophile diethylmaleate, but these effects are again blocked by p53 overexpression or endogenous p53 activation. Chromatin immunoprecipitation experiments support the hypothesis that this p53-dependent trans-repression is due to the direct interaction of p53 with the ARE-containing promoters. Considering that p53-induced apoptosis requires an accumulation of reactive oxygen species, this negative control on the Nrf2 transactivation appears to be aimed to prevent the generation of a strong anti-oxidant intracellular environment that could hinder the induction of apoptosis. | INTRODUCTION |
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-glutamylcysteine synthetase (2), the x-CT (subunit of the cystine/glutamate transporter) component of the cystine/glutamate exchange transport system (3), the glutathione S-transferases (GSTs), and the glutathione peroxidase (4, 5).
The expression of most of these antioxidant proteins is regulated through the interaction of the NF-E2-related factor (Nrf2) transcription factor with a cis-element present, often in multiple copies, in their cognate gene promoters, named ARE (antioxidant response element). Nrf2 is a potent transactivator, which is regulated through different mechanisms. The most studied mechanism concerns the regulation of the nuclear availability of Nrf2 by Keap1. Early results supported the hypothesis that Keap1 functions as an extranuclear anchor site for Nrf2, and more recently, experimental evidence suggested that Keap1 promotes Nrf2 degradation. In fact, Keap1 directly binds Nrf2 and the actin cytoskeleton, thus sequestering Nrf2 in the cytoplasm (6) and, on the other hand, it controls Nrf2 ubiquitination, which marks this protein for degradation by the 26 S proteasome (7, 8). Upon the addition of electrophiles, the Nrf2-Keap1 complex dissociates, the Keap1-dependent ubiquitination of Nrf2 is blocked (9), and Nrf2 accumulates into the nucleus, where it forms transcriptionally active complexes on the AREs (10).
In parallel with the described "antioxidant approach," cells counteract the consequences of an oxidative stress by attempting to repair the ROS- and/or electrophile-induced damages. A key role in this cellular response is played by p53. This is a transcription factor activated by the DNA damage, which regulates the expression of many target genes, leading to cell cycle arrest aimed to allow time for the repair of DNA damage (for a review, see Ref. 11). On the other hand, p53 also has a fundamental role in the induction of apoptosis of cells where DNA damage remains unrepaired.
The apoptosis induced by p53 appears to be at least in part dependent on the accumulation of ROS (12). In fact, a subset of the genes regulated by p53, named PIGs (p53-induced genes), encodes proteins that could collectively induce an increase in ROS concentration (12). The crucial role of the p53-dependent ROS accumulation is supported by several observations; for example, antioxidants, such as N-acetylcysteine, diphenyleneiodium chloride, and pyrrolidine dithiocarbamate, counteract ROS accumulation caused by p53 and, at the same time, prevent p53-induced apoptosis (12, 13).
The possible coexistence of the Nrf2-mediated antioxidant response with the regulation of apoptosis by p53 raises an apparent paradox. At least in principle, the induction of a very efficient ROS scavenging machinery by the Nrf2-dependent response could hamper, or at least interfere with, the p53-induced apoptosis that on the contrary requires the accumulation of ROS. Therefore, it is expected that a cross-talk between the Nrf2- and p53-induced responses should exist.
Here we demonstrate that p53 suppresses the Nrf2-dependent transcription of ARE-containing promoters. This result is achieved by a direct inhibitory effect of p53 on these promoters.
| EXPERIMENTAL PROCEDURES |
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Plasmids and TransfectionsThe expression vector for FLAG-Nrf2 was constructed by inserting into the EcoRV/BamHI-digested p3xFLAG-CMV 7-1 plasmid (Sigma) the cDNA encoding human Nrf2 (I.M.A.G.E.: 4548874). The insert was subcloned in-frame with FLAG epitope at the N terminus. The expression vector for p53 (pCMV-p53) contains the human wild-type full-length cDNAs inserted in pCMV-neo and was described previously (14).
The promoter region of mouse x-CT gene from 235 to +15 and of the mouse glutathione S-transferase-
1(GST-
1) from 940 to +41 were isolated by PCR from genomic DNA from NIH3T3 cells (15). These fragments were cloned into PGL3 Basic vector (Promega, Madison, WI). All the deletion constructs were made by PCR using x-CT (235 to +15) promoter as template and cloned in PGL3 Basic vector. For the constructs mut
-48-31, mut
-33-19, and mut
-48-19, the AREs-containing upstream region was amplified by PCR and ligated to double-stranded oligonucleotides designed on the basis of the promoter sequence from 31 to +15 or from 19 to +15. The fragments were cloned in PGL3 Basic vector. The promoter region of human NAD(P)H quinone oxidoreductase (NQO1) gene (from 923 to +111) (16) was amplified by PCR from genomic DNA prepared from HEK293 using the following primers (forward, 5'-TCCGGGTTCAAGCGATTCTCCTGCCTCAG-3', and reverse, 5'-GGCTCTGGTGCAGTCCGGGGCGCTGATTGG-3') and then cloned in PGL3 Basic vector. All plasmid constructs were sequenced.
For transient transfections of luciferase constructs, cells were seeded in 6-well dishes 24 h before experiments, and each transfection was performed in triplicate. Cells were co-transfected by using the calcium phosphate method with reporter plasmids (2 µg) and/or p53 and/or Nrf2 expression vectors (0.15 µg of each) in the presence of 0.2 µg of pRLSV40 encoding Renilla luciferase (Promega). DNA concentration was kept constant with empty vector. After overnight incubation with the precipitation reaction mixture, the medium was changed and, where indicated, the cells were treated with etoposide, cisplatin, or DEM. 36 h after the transfection, cells were harvested and analyzed for luciferase activity. The luciferase assay was performed with a Dual-Luciferase reporter assay system (Promega) according to the manufacturer's instructions. The firefly luciferase activity was normalized to Renilla internal control luminescence. The Lipofectamine Plus transfection reagent (Invitrogen) was used to perform the transfections in human HEK293 and Calu-6 following the suggestions of manufacturer's procedures.
RNA Preparation and Quantitative Real-time Reverse Transcription-PCRTotal RNA was isolated by using the Qiagen total RNA isolation kit (Qiagen, Valencia, CA). For quantitative real-time PCR, cDNAs were synthesized in a Gene AMP PCR system 9700 from 1µg of total RNA in a 20-µl reaction containing 1x reverse transcriptase buffer with 5 mM MgCl2, 10 mM 1.4-dithiothreitol, 5 mM random examers, 1 mM dNTP, 1 unit/ml RNase inhibitor, and 10 units/ml reverse transcriptase (Moloney murine leukemia virus reverse transcriptase, Invitrogen). The reaction was incubated at 70 °C for 10 min and then at 25 °C for 10 min followed by 42 °C for 45 min and 99 °C for 3 min. Aliquots of cDNA (
of reverse transcription reactions) were used in real-time PCRs. SYBR Green-based real-time PCR was used to determine cDNA levels. Aliquots of cDNA were amplified in an iCycler iQ real-time PCR detection system (Bio-Rad) using iQTM SYBR Green Supermix in triplicate in 25-µl reaction volumes. The sequences of the primer pairs used with mouse samples were: c-Abl (oncogene homologue of abelson murine leukemia virus, used as the internal control), 5'-GGTATGAAGGGAGGGTGTACCA-3' and 5'-GTGAACTAACTCAGCCAGAGTGTTGA-3'; Gadd45, 5'-AGACCCCGGACCTGCACT-3' and 5'-CCGGCAAAAACAAATAAGTTGACT-3'; GST-
1, 5'-CAGGTGGCTCCTAGCTGCA-3' and 5'-GGTCTGCGCCAGCTTCA-3'; x-CT, 5'-TACCTCAACTTTATTACTGAAGAAGTAGACAA-3' and 5'-TGTCAGTACGTAGCCCACTGTGA-3'; NQO1, 5'-CCCTCAACATCTGGAGCCAT-3' and 5'-GCGTAGTTGAATGATGTCTTCTCTGA-3'. The sequences of the primer pairs used with human samples were: c-Abl, 5'-TGGAGATAACACTCTAAGCATAACTAAAGGT-3' and 5'-GATGTAGTTGCTTGGGACCCA-3'; NQO1, 5'-GATATTCCAGTTCCCCCTGCA-3' and 5'-AAAGCACTGCCTTCTTACTCCG-3'; Gadd45, 5'-AGACCCCGGACCTGCACT-3' and 5'-CCGGCAAAAACAAATAAGTTGACT-3'. PCR cycling conditions were: 95 °C for 5 min and 40 cycles of 95 °C for 15 s and 60 °C for 1 min. Expression levels were calculated relative to c-Abl mRNA levels as endogenous control. Relative expression was calculated as 2(Ct test gene Ct c-Abl) (17).
Nuclear Protein Preparation and Western blot AnalysisFor nuclear protein preparation, cells were treated with the indicated amounts of DEM or with Me2SO (at the same concentration as the DEM solution) for 1 h, washed twice with cold PBS, solubilized at 4 °C with 300 µl of lysis buffer (10 mM Hepes, 60 mM KCl, 1 mM EDTA, 1 mM 1.4-dithiothreitol, 1 mM phenylmethylsulfonyl fluoride (PMSF), 1 mM Na3VO4, 0.2% Nonidet P-40, and 10 µg/ml aprotinin, leupeptin and pepstatin), and centrifuged at 2500 rpm for 5 min at 4 °C. The nuclear pellet was washed with lysis buffer without Nonidet P-40 and resuspended in 300 µl of the same buffer. This volume was added to 300 µl of lysis buffer with 30% saccharose and without Nonidet P-40 and centrifuged at 6000 rpm for 15 min at 4 °C. Nuclear pellet was resuspended in 50 µl of a buffer containing 250 mM Tris-HCl, pH 8.0, 60 mM NaCl, 1 mM 1.4-dithiothreitol, 1 mM Na3VO4, 1 mM PMSF, and 10 mg/ml aprotinin, leupeptin and pepstatin. Nuclei were lysed with three cycles freezing (80 °C)/defrosting (37 °C). Finally, nuclear extracts were obtained by centrifugation at 9500 rpm for 10 min at 4 °C. 15 µl of supernatant from each sample were heated at 95 °C for 5 min, separated by electrophoresis on 10% SDS-polyacrylamide, and transferred to Immobilon-P transfer membranes (Millipore). Membranes were washed and blocked with 5% nonfat dry milk in PBS containing 0.1% Tween 20 at room temperature for 1 h. Nrf1 and Nrf2 levels were analyzed by Western blotting using 1 µg/ml anti-Nrf1 and anti-Nrf2 rabbit polyclonal antibodies (H-285 and H-300, respectively; Santa Cruz Biotechnology, Inc., Santa Cruz, CA) at room temperature for 2 h. After incubation with rabbit horseradish peroxidase-conjugated secondary antibody at room temperature for 30 min, the blots were developed using enhanced chemiluminescence (Amersham Biosciences, Uppsala, Sweden).
For Western blot on total extracts, the cells were washed with cold PBS and solubilized at 4 °C for 30 min in lysis buffer containing phosphate buffer, 0.1 mM EDTA, 1 mM Na3VO4, 50 mM NaF, 0.5% Nonidet P-40, 1 mM PMSF, and 10 µg/ml each of aprotinin, leupeptin, and pepstatin. The cell lysates were cleared by centrifugation at 4000 rpm for 10 min at 4 °C. Western blots were performed as described above with antibodies against FLAG (FLAG M2 from Sigma), p53 (rabbit polyclonal FL-393), and mouse monoclonal DO-1 (from Santa Cruz Biotechnology), pATM (from Cell Signaling Technology, Inc, Beverly, MA), and tubulin (from Santa Cruz Biotechnology), and the signals were detected by using the ECL kit (Amersham Biosciences).
Chromatin Immunoprecipitation AssayHepa16 and Calu-6 cells were grown in 100-mm dishes; Calu-6 cells were transfected with FLAG-Nrf2 or pCMV p53 and/or with the deletion mutants of the x-CT gene promoter by using the Lipofectamine transfection reagent. 24 h after transfection, the cells were fixed using 1% formaldehyde in medium for 10 min at room temperature. The cells were treated with 0.125 M glycine for 5 min to stop fixation and washed twice with ice-cold PBS. The cells were scraped in PBS, collected by centrifugation, and lysed in lysis buffer (5 mM PIPES, pH 8.0, 85 mM KCl, 0.5% Nonidet P-40, 1 mM PMSF supplemented with protease inhibitors). After centrifugation, nuclear pellet was resuspended in nuclear lysis buffer (50 mM Tris-HCl, pH 8.0, 10 mM EDTA, 0.8% SDS, 1 mM PMSF supplemented with protease inhibitors) and sonicated for four cycles (30-s pulse and 30-s rest on ice). The sonication conditions were optimized to determine generation of DNA fragments between 500 and 1000 base pairs in length. Sheared chromatin was diluted to 8 ml, and aliquots of 300 µl were immunocleared with protein G-agarose slurry for 1 h at 4 °C. A portion of the precleared chromatin was stored and labeled as "input DNA." The remaining chromatin was immunoprecipitated with IgG (control), p53 (sheep polyclonal Ab7 from Calbiochem, VWR International GMBH, Germany), FLAG M2 (Sigma), and Nrf2 (Santa Cruz Biotechnology) antibodies. The immunoprecipitates were washed sequentially with wash buffer A (10 mM Tris-HCl, pH 8.0, 1 mM EDTA, 0.5 mM EGTA, 1% Triton X-100, 0.1% sodium deoxycholate, 0.1% SDS, 140 mM NaCl) for 5 min each; with wash buffer B (0.25 M LiCl, 0.5% Nonidet P-40, 0.5% sodium deoxycholate, 1 mM sodium EDTA, 10 mM Tris-HCl, pH 8.0); and with wash buffer C (10 mM Tris-HCl, pH 8.0, 1 mM sodium EDTA). Protein-DNA complexes were resuspended in buffer C for reversal of cross-links by heating at 65 °C overnight. Then, DNA was purified using proteinase K treatment at 50 °C for 3 h followed by phenol extraction and ethanol precipitation. PCR was performed using 1:100-diluted input DNA and 3 µl of immunoprecipitated DNA from a 30-µl material. The association of p53 and Nrf2 with endogenous x-CT promoter in Hepa and Calu cells was measured by PCR on immunoprecipitated chromatin using the following primers spanning the x-CT AREs: 5'-ATCCATTGAGCAACCCACA-3'; 5'-CATTACACACCAGCTCAGCT-3'; 5'-GCTTAGGTCAGTTGAGCAA-3'; 5'-CATTACACACCAGCTCAGCT-3'.
For nonspecific genomic DNA contaminations, primers from the mouse and human x-CT genes located at 2157 and at 1956 (mouse) and at 2002 and at 1803 bp (human) upstream of the ARE sequence elements were used. The primers were: 5'-TCAAAGCCTGGTGCCATG-3'; 5'-GATTAATGAGCATGAGGGAC-3'; 5'-ATTCTGAGTGGTGGCCTC-3'; 5'-CTGAACTCATAAGTTGAGCC-3'. The association of transfected p53 with the deletion mutants of the x-CT gene promoter was measured by PCR using the following primers in luciferase gene: 5'-CATTCCGGTACTGTTGGTAA-3'; 5'-TCGAAGTACTCAGCGTAAGT-3'.
For nonspecific DNA contaminations, primers annealing to the luciferase gene are located at +1766 and +1986 of the pGL3 vector: 5'-TTCGAGCAGACATGATAAGA-3'; 5'TTTGTAGAGGTTTTACTTGCT-3'. The PCR products were run on 2% agarose gels and visualized by ethidium bromide staining.
FACSFor the analysis of apoptosis by propidium iodide, HCT116 cells were treated with different concentrations of DEM for 24 h. Cells were harvested and centrifuged for 10 min at 1100 rpm. The cell pellet was resuspended in 400 µl of incubation buffer 1x containing 100 mM Hepes, pH 7.4, 1.5 M NaCl, 50 mM KCl, 10 mM MgCl2, 18 mM CaCl2, and 10 µl of propidium iodide. FACS analysis was performed with standard protocols.
| RESULTS |
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1 and NQO1 genes (22, 23) (Fig. 2, A and B). To evaluate the effects of Nrf2 and p53 on the transcription of endogenous x-CT and NQO1 genes, HEK293 cells were transfected with Nrf2 alone or with Nrf2 and p53, and the mRNA levels of these genes were measured by real-time PCR. As shown in Fig. 3, Nrf2 overexpression increased the x-CT and NQO1 mRNA levels about 3-fold, and the co-expression of p53 almost completely abolished the effects of Nrf2. Gadd45 mRNA was measured as a control and, as expected, its levels were not affected by Nrf2. On the contrary, p53 induced the accumulation of Gadd45 mRNA, and this induction was not affected by Nrf2.
DNA Damage Counteracts the Nrf2-mediated Antioxidant Response through a p53-dependent MechanismThe results reported in Fig. 1 can be explained by hypothesizing that ROS accumulation, induced by DEM treatment, provokes the DNA damage-dependent activation of p53. Thus, we asked whether the activation of endogenous p53, induced by non-oxidative DNA damage, has the same effects of p53 overexpression obtained by transient transfection. To this aim, Hepa cells, transfected with an empty vector or with the vector driving the expression of Nrf2, were treated with 100 µM etoposide or 10 µM cisplatin for 24 h to induce DNA damage. Fig. 4A shows that both etoposide and cisplatin treatments provoke a significant decrease of the activation of the x-CT gene promoter induced by Nrf2.
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1 and NQO1 gene promoters (data not shown).
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We then explored the behavior of isogenic HCT(p53WT) and HCT(p53/) cells exposed to cisplatin. As observed in Hepa cells treated with etoposide, cisplatin induced the activation of p53 in HCT(p53WT) (Fig. 5G), and DEM treatment resulted in the nuclear translocation of Nrf2 in both HCT(p53WT) and HCT(p53/) cells (Fig. 5H). In these conditions, the transcription of the x-CT-Luc reporter and the accumulation of endogenous x-CT mRNA, induced by DEM, were inhibited only in HCT(p53WT) and not in HCT(p53/) cells (Fig. 5, E and F).
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p53 Deficiency Reduces the Sensitivity of the Cells to DEM-induced ApoptosisThe observation that the antioxidant response of the cells mediated by Nrf2 is down-modulated by p53 suggests that in the absence of this p53-dependent regulation, the sensitivity of the cells to ROS-induced apoptosis should be decreased. To examine this possibility, we measured the apoptosis induced by increasing concentrations of DEM in HCT(p53WT) and HCT(p53/) cells. As shown in Fig. 7, the absence of p53 strongly decreased the sensitivity of the HCT cells to the oxidative stress.
| DISCUSSION |
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1, and NQO1, is down-modulated by p53. These results demonstrate the existence of a cross-talk between the two mechanisms. The involvement of p53 in the regulation of the redox homeostasis has been suggested by numerous results. It, in fact, activates the transcription of several genes whose products have either pro-oxidant or anti-oxidant functions (12, 2427). Furthermore, low levels of p53 appear to be associated with the activation of several antioxidant genes and with the consequent decrease of intracellular ROS (28). On the contrary, DNA damage-dependent activation of p53 induces a significant accumulation of ROS that is crucial for the p53-dependent apoptosis (12, 13). Our findings indicate the existence of a new mechanism through which p53 affects intracellular redox conditions.
p53 could regulate the ARE-containing promoters by modifying the expression of key proteins that control these genes. Nrf2 and Keap1 expression is not affected by p53 overexpression or by the activation of endogenous p53 induced by DNA damage (data not shown). On the contrary, our results suggest that p53 could regulate these genes by functioning as a transcription repressor. There are numerous mechanisms that have been proposed for the p53-dependent trans-repression (for a review, see Ref. 29), but this point remains to be definitively addressed. Among the various genes whose expression is suppressed by p53, one class of genes encodes proteins regulated in the G2/M phase of the cell cycle (3033). p53 is stably associated with these promoters in the absence of recognizable p53 cis-elements by using the CCAAT box-binding protein nuclear factor Y as an anchor site. Upon DNA damage, p53 is acetylated, and this modification probably unmasks its ability to repress the transcription of the associated genes (34). Therefore, in these cases, p53 targets the promoters containing the CCAAT box. The three promoters we examined do not contain any recognizable CCAAT boxes; thus, it is unlikely that p53 affects their activity through the nuclear factor Y-dependent mechanism. Similarly, these promoters do not contain any obvious p53 cis-elements. However, in the case of the x-CT gene promoter, our results show that p53 is stably associated in chromatinized complexes also in the absence of DNA damage, as already demonstrated for other gene promoters (35). The dissection of the x-CT gene promoter allowed us to demonstrate that the region involved in the interaction of p53 is located just upstream of the transcription start site, where no obvious p53 cis-elements are present (Fig. 6B). This means that p53 could directly interact with atypical DNA cis-elements or, indirectly, through still unidentified DNA-binding proteins.
In cells not exposed to DNA-damaging agents, p53 bound to these promoters does not seem to affect the basal levels of transcription. In fact, when compared with the efficiency of constitutively active promoters, such as that of cytomegalovirus, the basal transcription efficiency of the three promoters we studied is very similar in all the cell lines used, regardless the p53 genotype. This suggests that, as in the case of the CAATT-containing promoters mentioned above, p53 represses these promoters only upon regulatory events, e.g. phosphorylation and/or acetylation, induced by the DNA damage.
The results reported in Fig. 6A apparently suggest that p53 represses the transcription by displacing Nrf2 bound to the x-CT gene promoter. However, the chromatin immunoprecipitation experiments exploring the endogenous proteins (Fig. 6C) do not support this hypothesis. In fact, endogenous p53 was found to be associated with the promoter in basal conditions. Furthermore, the interaction of Nrf2 with the promoter, induced by the oxidative stress, appears to be compatible with the contemporary occupancy of the promoter by p53. These results support the speculation that the p53-dependent transrepression is due to the activation of p53, perhaps as a consequence of its phosphorylation and/or acetylation and not to the recruitment of the protein on the promoter. The results that emerged from the dissection of the x-CT gene promoter, indicating that the region involved in the interaction with p53 also contains the TATA box (Fig. 6B), support the possibility that activated p53 could act by interfering with the assembly of basal transcription machinery. However, other possibilities cannot be excluded, such as the recruitment of histone deacetylase or of other chromatin remodeling factors by activated p53.
The findings we report in this study gave further support to the hypothesis that the Nrf2-Keap1-based antioxidant machinery could have a relevant role in cancer. It was recently found that genetic variants of the Keap1 gene are associated with lung cancer (18). The amino acids affected by these mutations lie in the region involved in the binding of Keap1 to Nrf2; thus, in the examined cancer cells, Keap1 function is defective, and this results in a constitutive activation of Nrf2. How this phenomenon contributes to the development of the neoplastic phenotype is still not clear. However, the observation that p53, among its various functions, is also responsible for the suppression of the Nrf2 activity further suggests that the antioxidant response of the cell is taken under a strict control because of its possible harmful consequences.
| FOOTNOTES |
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1 To whom correspondence should be addressed: Dipartimento di Biochimica e Biotecnologie Mediche, via S. Pansini 5, 80131 Napoli, Italy or Tommaso Russo, CEINGE Biotecnologie avanzate, via Comunale Margherita 482, 80134 Napoli, Italy. Tel.: 39-0813737863; Fax: +39-0813737808; E-mail: russot{at}dbbm.unina.it.
2 The abbreviations used are: ROS, reactive oxygen species; ARE, antioxidant response element; GST, glutathione S-transferase; DEM, diethylmaleate; PMSF, phenylmethylsulfonyl fluoride; PBS, phosphate-buffered saline; PIPES, 1,4-piperazinediethanesulfonic acid; WT, wild type; FACS, fluorescence-activated cell sorter. ![]()
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