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J. Biol. Chem., Vol. 281, Issue 6, 3198-3203, February 10, 2006
SARS Coronavirus, but Not Human Coronavirus NL63, Utilizes Cathepsin L to Infect ACE2-expressing Cells*
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| ABSTRACT |
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| INTRODUCTION |
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800 people,
10% of those infected (14). Three genetic and serologic groups of animal and human coronaviruses have been described. The five coronaviruses shown to cause human disease belong either to group 1 or group 2. Despite many unique features, SARS-CoV clusters phylogenetically with group 2 (5), a group that also includes the less pathogenic human coronaviruses OC43 and HKU1 (HCoV-OC43, HCoV-HKU1) (6, 7). Angiotensin-converting enzyme 2 is the cellular receptor for SARS-CoV (812). The cellular receptors for HCoV-OC43 and -HKU1 have not been identified. Group 1 coronaviruses include HCoV-229E, which, like many animal group 1 viruses, utilizes aminopeptidase N (CD13) as its cellular receptor (13, 14). Recently a novel group 1 coronavirus, HCoV-NL63 (HCoV-NL, HCoV-NH), has been described (1517). HCoV-NL63 is a common, widely distributed pathogen associated with moderate respiratory illness in children (1523). Despite its close similarity to other group 1 coronaviruses, HCoV-NL63 utilizes the SARS-CoV receptor ACE2 to infect cells (19).
The spike (S) proteins of coronaviruses mediate infection of receptor-bearing cells (24). Like many other class 1 fusion proteins such as those of HIV-1, influenza viruses, and filoviruses (ebola- and marburgviruses), some coronavirus S proteins are cleaved by a furin-like protease in virus-producing cells, generating two subunits (S1 and S2 in the case of coronaviruses). Producer-cell processing is necessary for infection mediated by the HIV-1 envelope glycoprotein and influenza virus hemagglutinin (25). The S protein of SARS-CoV is not processed in producer cells, but the S1 and S2 domains can be identified by their similarity with processed coronaviral S proteins (26). The S1 domain mediates an initial, high affinity association with the cellular receptor (2730). The C-terminal S2 domain mediates fusion of the viral and cellular membranes (26). The S2 domain contains a fusion peptide, a hydrophobic stretch of residues that associates with target cell membranes and facilitates mixing of viral and cellular bilayers. The coronavirus fusion peptide is located internally within S2. In contrast, the fusion peptides of influenza viruses and HIV-1, but not those of filoviruses, are immediately adjacent to the furin cleavage sites at the N termini of their S2-like domains (25).
Cathepsins are a diverse group of endosomal and lysosomal proteases that include aspartyl, serine, and cysteine proteases with both endo- and exopeptidase activities (31). The role of cathepsins in reovirus infection is well established (3236). Following receptor-mediated endocytosis, the reovirus virion is converted to an infectious subvirion particle by partial proteolysis, mediated by cathepsins B, L, or S. One or more of these enzymes degrades the reovirus outer capsid protein
3, exposing the underlying µ1 protein, which mediates penetration of endosomal membranes (3739). Degradation of
3 and autocatalytic cleavage of µ1 are essential for reovirus infection, and all known inhibitors of
3 cleavage block reovirus replication (32, 34, 40). Recently, it has been demonstrated that infection mediated by the GP protein of the Zaire ebolavirus depends on cathepsin B and, to a lesser extent, on cathepsin L (41).
Here we show that cathepsin L plays an important role in SARS-CoV infection. In contrast, HCoV-NL63 infection is not dependent on cathepsin B, L, or S activities. Thus variations in the activity of cellular proteases can modulate the relative efficiencies with which these viruses enter ACE2-expressing cells.
| EXPERIMENTAL PROCEDURES |
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Pseudotyped Virus Production and InfectionMLV-GFP virions pseudotyped with SARS-CoV S protein have been described previously (45). The experiments described here utilize S proteins of SARS-CoV and HCoV-NL63 with 27- and 24-residue deletions, respectively, in their cytoplasmic C termini. We have previously shown that such deletions enhance incorporation of the S proteins into the retroviral particle (45). Plasmids encoding the SARS-CoV or HCoV-NL63 S proteins were cotranfected with plasmid encoding the MLV gag and pol genes and with a construct bearing the MLV long terminal repeats, packaging signal, and the green fluorescent protein (GFP) gene (pQ-GFP), derived from the pQCXIX vector (Invitrogen). To generate pseudotyped MLV/GFP virions, HEK293T cells were transfected at a 5:5:2 ratio with gag/pol expressor, pQ-GFP, and plasmids encoding SARS-CoV or HCoV-NL63 S protein, ebola- or marburgvirus GP protein, HIV-1 envelope glycoprotein (HXB2 isolate), or vesicular stomatitis virus glycoprotein (VSV-G). Virus-containing cell culture supernatants were harvested 2 days later and filtered through a 0.45-µm filter. Target cells were prepared by transfecting HEK293T cells with expressor plasmids for ACE2 for SARS/MLV and NL63/MLV or CD4 and CXCR4 for HIV-1/MLV. Cells were replated onto polylysine-coated 24-well plates and infected
48 h after transfection. Level of infection was assessed 2 days later by measuring GFP expression by flow cytometry. For inhibitor studies, cells were preincubated for 3 h with medium containing the indicated inhibitors and infected for 5 h with virus suspension containing the same concentration of inhibitor. In experiments that included HCoV-NL63, to achieve similar infection levels among various pseudoviruses, SARS/MLV was diluted 57-fold, HIV-1/MLV by 2-fold, VSV-G/MLV by 2030-fold, and NL63/MLV was not diluted. At these dilutions, mean fluorescence intensity of total cells incubated with these pseudoviruses ranged from 72 to 123 for NL63/MLV, from 63 to 151 for SARS/MLV, 46 to 96 for VSV-G/MLV, 90 to 151 for HIV/MLV, and 5 to 11 for uninfected cells.
Infection of Cells Expressing Exogenous CathepsinsHEK293T cells grown on 6-well plates were transfected with 0.22 µg of plasmid expressing human ACE2 (9) and 2.5 µg of vector or plasmid expressing one of human cathepsins B, L, or S and replated the next day for flow cytometry, metabolic labeling, and infection. One aliquot of transfected cells was labeled with [35S]cysteine and [35S]methionine between 36 and 48 h following transfection to assess the expression of cathepsins in each transfection. Approximately 48 h after transfection, an additional aliquot of transfected cells was stained with goat anti-human-ACE2 antibody (R&D Systems) to assess ACE2 expression level, and a third aliquot of cells was infected with SARS/MLV, NL63/MLV, or VSV-G/MLV, as described above. The degree of infection is represented by GFP expression (mean fluorescence) in infected cells measured by flow cytometry 4860 h after infection. Labeled cells were lysed in 0.5% Nonidet P-40/PBS containing protease inhibitor mixture (Sigma), and cathepsins were immunoprecipitated with anti-c9 tag antibody 1D4 (National Institutes of Health AIDS Research & Reference Reagent Program) and Protein A-Sepharose. Washed samples were analyzed by reducing SDS-PAGE and autoradiography.
Cathepsin Inhibitor Studies Using Infectious VirusVero cells were cultured at 34 °C in Iscove's modified Dulbecco's medium (BioWhittaker) supplemented with 5% fetal bovine serum. Cells in 96-well plates were pretreated with medium containing the indicated inhibitors and inoculated for 1 h with SARS-CoV (strain 5688, fourth passage) at a multiplicity of infection of 0.1 in the presence of the same concentration of inhibitors, and cells were washed twice with Iscove's modified Dulbecco's medium. Eight hours later, cells were fixed with 4% formaldehyde and 70% ethanol, 0.5% H2O2 successively, permeabilized with PBS/0.5% Tween 20, and incubated for 1 h at 37°C with 40-fold-diluted polyclonal antisera obtained from SARS-CoV-infected ferrets (Mustela furo). Horseradish peroxidase-conjugated goat-anti-ferret antibodies (Dako) were used at 1:50 dilution. The reaction was developed with 3-amino-9-ethylcarbazole (Sigma) according to the manufacturer's instruction, and infected cells were counted. LLC-MK2 cells were cultured at 34 °C in Dulbecco's modified Eagle's medium containing 10% fetal bovine serum. HCoV-NL63 (sixth passage) infection was carried out for 1 h at a multiplicity of infection of 0.01. After 24-h incubation, plates were processed as described above, and HCoV-NL63 infecton was detected by staining cells with 100-fold diluted human polyclonal serum, biotinylated anti-human antibody (1:250), and the VEC-TASTAIN ABC reagents (Vector Laboratories). All experiments were performed twice in duplicate. LLC-MK2 cells, HCoV-NL63, and human antiserum were generous gifts from Dr. Lia van der Hoek.
| RESULTS AND DISCUSSION |
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We then examined the ability of these protease inhibitors to block infection of replication-competent SARS-CoV and HCoV-NL63, a group 1 coronavirus that also utilizes ACE2 as its cellular receptor. Sindbis virus and VSV were also included in these studies as controls. Infection was assessed within 8 and 24 h of incubation with SARS-CoV and HCoV-NL63, respectively, thereby minimizing any potential effects of inhibitors on post-entry steps in viral replication. As shown in Fig. 2A, neither SARS-CoV nor HCoV-NL63 infection was inhibited by AEBSF or phosphoramidon. SARS-CoV infection was effectively blocked by cathepsin L inhibitor and less significantly by cathepsin B inhibitor (Fig. 2B) at concentrations comparable with those effective with pseudotyped virus. While cathepsin B inhibitor did not have any effect, cathepsin L inhibitor partially blocked HCoV-NL63 and Sindbis virus infection at the highest concentration in one of two cell lines assayed. This partial inhibition in LLK-MK2 cells may have been to due to cytotoxicity.
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Because cathepsin inhibitors can cross-react, we investigated the consequences of exogenous cathepsin B, L, and S expression in 293T cells that express human ACE2. To ensure comparable ACE2 expression levels in cells transfected with various cathepsins, cells were transfected with various amounts of ACE2-expressing plasmid together with a fixed amount of cathepsin plasmid, and ACE2 cell-surface expression was assessed by flow cytometry following each transfection. As shown in Fig. 4A, exogenous cathepsin L markedly increased infection by SARS/MLV but had no effect on NL63/MLV or VSV-G/MLV. Exogenous cathepsin S also modestly enhanced SARS/MLV infection but, surprisingly, inhibited NL63/MLV infection. We speculate that overexpressed cathepsin S, which is secreted and active at neutral pH, may digest and inactivate the HCoV-NL63 S protein but not that of SARS-CoV. In parallel, epitope-tagged cathepsins were immunoprecipitated from an aliquot of the same cells and analyzed by SDS-PAGE. Fig. 4B shows that exogenous cathepsin L expression was lower than that of cathepsin B or S, despite its greater effect on SARS-CoV infection.
Similarly, as shown in Fig. 4C, introduction of cathepsin L into mouse embryonic fibroblasts derived from mice lacking cathepsin L (MEFs L/) resulted in substantially enhanced infection by SARS/MLV and MLV pseudotyped with marburg- and ebolavirus GP proteins. Again, no enhancement of infection was observed with NL63/MLV or VSV-G/MLV. Additional experiments with similar results are shown in supplemental Fig. 1A. Collectively, these data show that introduction of cathepsin L into cells where this enzyme is limiting or absent can substantially boost infection mediated by the SARS-CoV but not the HCoV-NL63 S protein.
The role of cathepsins in the cellular entry of reoviruses has been appreciated for some time (34, 36). Recently, it has been demonstrated that infection mediated by the GP protein of Zaire ebolavirus also depends on cathepsin B and, to a lesser extent, on cathepsin L (41). Here we extend this observation to SARS-CoV, which appears to be more dependent on cathepsin L than on cathepsin B. Cathepsin S also appears to contribute modestly to SARS-CoV infection and may partially compensate for the absence of cathepsin L in some cells. We also show that infection mediated by the S protein of another coronavirus that utilizes ACE2 as a receptor, HCoV-NL63, is not dependent on any of these cathepsins. It remains to be investigated whether other cellular proteases contribute to HCoV-NL63 infection through a mechanism analogous to the role played by cathepsin L in SARS-CoV infection or whether HCoV-NL63, like HIV-1 and VSV, infects cells independently of target-cell proteases.
It is not yet clear how cathepsin L facilitates SARS-CoV infection. Several compatible possibilities exist. Cathepsin L may serve to nonspecifically degrade the S1 domain of SARS-CoV S protein, thereby permitting conformational transitions in the S2 domain necessary for fusion. ACE2 could also be a cathepsin target, thereby facilitating its dissociation with the S protein. Interestingly, we have observed that introduction of exogenous cathepsins reduces cell-surface expression of ACE2 (supplemental Fig. 1B). Cathepsin L could also cleave immediately upstream of the coronavirus fusion peptide in process equivalent to the furin cleavage of the HIV-1 and influenza fusion proteins.
Our studies show that SARS-CoV infection can be limited by low cathepsin L expression. Of note, mature endothelial cells express relatively low levels of cathepsin L (48), and despite their efficient expression of ACE2, little infection or replication of SARS-CoV has been observed in these cells (11, 12, 49). Although multiple factors may contribute to the infection efficiency of endothelial cells, one possibility is that low cathepsin L activity limits SARS replication in these cells. Studies determining whether HCoV-NL63 more efficiently infects these cells in vivo than SARS-CoV are warranted.
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| FOOTNOTES |
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* This work was supported by Grants AI43891 (to H. C.) and AI0616101 (to M. F.) from the National Institutes of Health and Grant SP22-CT-2004-511060 (to P. J. M. R.) from the European Union. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
The on-line version of this article (available at http://www.jbc.org) contains supplemental Fig. 1. ![]()
1 These authors contributed equally to this article. ![]()
2 To whom correspondence may be addressed. E-mail: p.j.m.rottier{at}vet.uu.nl. 3 To whom correspondence may be addressed. E-mail: hyeryun.choe{at}childrens.harvard.edu.
4 The abbreviations used are: SARS, severe acute respiratory syndrome; CoV, coronavirus; S, spike; ACE2, angiotensin-converting enzyme 2; MHV, mouse hepatitis virus; HCoV, human coronavirus; VSV-G, vesicular stomatitis virus glycoprotein; HIV, human immunodeficiency virus; MLV, murine leukemia virus; GFP, green fluorescent protein; PBS, phosphate-buffered saline; BSA, bovine serum albumin; AEBSF, 4-(2-aminoethyl)bezenesulfonyl fluoride. ![]()
| ACKNOWLEDGMENTS |
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