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J. Biol. Chem., Vol. 281, Issue 8, 4867-4875, February 24, 2006
The Drosophila fused lobes Gene Encodes an N-Acetylglucosaminidase Involved in N-Glycan Processing* 12![]() 1![]() ![]() ![]()
From the
Received for publication, October 11, 2005 , and in revised form, November 28, 2005.
Most processed, e.g. fucosylated, N-glycans on insect glycoproteins terminate in mannose, yet the relevant modifying enzymes require the prior action of N-acetylglucosaminyltransferase I. This led to the hypothesis that a hexosaminidase acts during the course of N-glycan maturation. To determine whether the Drosophila melanogaster genome indeed encodes such an enzyme, a cDNA corresponding to fused lobes (fdl), a putative -N-acetylglucosaminidase with a potential transmembrane domain, was cloned. When expressed in Pichia pastoris, the enzyme exhibited a substrate specificity similar to that previously described for a hexosaminidase activity from Sf-9 cells, i.e. it hydrolyzed exclusively the GlcNAc residue attached to the 1,3-linked mannose of the core pentasaccharide of N-glycans. It also hydrolyzed p-nitrophenyl-N-acetyl- -glucosaminide, but not chitooligosaccharides; in contrast, Drosophila HEXO1 and HEXO2 expressed in Pichia cleaved both these substrates but not N-glycans. The localization of recombinant FDL tagged with green fluorescent protein in Drosophila S2 cells by immunoelectron microscopy showed that this enzyme transits through the Golgi, is present on the plasma membrane and in multivesicular bodies, and is secreted. Finally, the N-glycans of two lines of fdl mutant flies were analyzed by mass spectrometry and reversed-phase high-performance liquid chromatography. The ratio of structures with terminal GlcNAc over those without (i.e. paucimannosidic N-glycans) was drastically increased in the fdl-deficient flies. Therefore, we conclude that the fdl gene encodes a novel hexosaminidase responsible for the occurrence of paucimannosidic N-glycans in Drosophila.
Insect cells are considered to be an interesting alternative to mammalian, yeast, or bacterial cells for the expression of recombinant proteins (1, 2), because the potentially high levels of expression are associated with the ability to perform many eukaryotic post-translational modifications. Nevertheless, glycoproteins produced in insects and insect cells have been mainly found to carry paucimannosidic N-glycans, i.e. glycans consisting of the pentasaccharide core with or without 1,6- and/or 1,3-linked fucose (1, 3-5). In addition to the possible presence of the immunogenic core 1,3-linked fucose, the lack of complex type N-glycans with complete, sialylated antennae as found on mammalian glycoproteins makes insect cells unsuitable for the production of many therapeutic glycoproteins (6).
Only in a few cases have substitutions of the terminal mannose residues of insect N-glycans been described. The most common substitution is the presence of terminal GlcNAc on the
It was therefore hypothesized that in insect cells, as in plant cells, the GlcNAc-1 is cleaved off at some stage. In the case of phytohemagglutinin, it appears that removal of GlcNAc residues occurs after the arrival of the protein in the vacuoles of the plant cell (18). Indeed, it appears that in plants only proteins resident in the glycosidase-rich vacuolar compartment lack the GlcNAc-1 residue, whereas in insects this residue is absent from the vast majority of glycoproteins, including those that are secreted (19). Thus hexosaminidase trimming could constitute a regular and deliberate event during glycoprotein maturation occurring within the insect secretory pathway.
In fact, in 1995, Sf-9 cells (as well as Bm-N and MB0503 cells) were reported to contain a membrane-bound N-acetylglucosaminidase possibly residing in the Golgi apparatus (20). It is noteworthy that this enzyme could not hydrolyze Man5Gn,4 but acted only further "downstream" on MGn and GnGn where it specifically removed GlcNAc-1 (20). Subsequent cell culture experiments in the presence of hexosaminidase inhibitors (7, 11, 21) or of recombinant
Various attempts have been made to overcome this problem. For instance, the heterologous overexpression of mammalian GlcNAc-transferase I was performed, but, because of the competition with the endogenous hexosaminidase, most of the N-glycans still did not carry GlcNAc-1 (24). Another approach is to overexpress
To perform any specific ablation of the hexosaminidase, it is necessary to identify the relevant gene. To this end, we have identified and recombinantly expressed the three obvious homologues of family 20 glycohydrolases in the fruit fly. Furthermore, we have determined the substrate specificity, molecular function, and subcellular localization of one of them, which we conclude to be the D. melanogaster processing
Fly StrainsThe wild-type flies used in this study were of the Canton Special (CS) strain. The hypomorphic fdl mutant, due to the insertion of a transposable P-element, was recovered after a screen for adult brain anatomical mutants (27). The Df(2R)achi2 strain, which lacks six genes, including fdl (28), was a gift from Dr. Robert A. H. White. Cloning and Expression of cDNAs Encoding N-Acetylglucosaminidases from DrosophilaThe sequences encoding the putative Drosophila N-acetylglucosaminidases were found by searching for homologues of human lysosomal hexosaminidase within assembled gene products of the Drosophila genome data base (www.flybase.org/). The predictions of the subcellular location and transmembrane topology were performed using, respectively, WoLF PSORT (wolfpsort.seq.cbrc.jp) and TMPRED (www.ch.embnet.org/software/TMPRED_form.html) (29).
RNA was extracted from Drosophila S2 cells using TRIzol reagent, and RT-PCR was performed using Expand polymerase (Roche Applied Science). For the soluble form of FDL (amino acids 30-660), the primers 5'-GGAATTCCAAGGAGTCACCAAGG-3' and 5'-GGGGTACCTCAAATGCATTCGC-3' were used; for HEXO1 and HEXO2, the primer pairs 5'-GGAATTCAGCTCGGATGACTTGGTTTAC-3' and 5'-GGGGTACCTCAGGCAGAGAGCGTTGTG-3' or 5'-GGAATTCGATGACGTCGGCAGC-3' and 5'-TCCCCGCGGGGATTAGAGGCACTGT-3', respectively, were employed. The PCR products were digested with the relevant restriction enzymes and cloned into the pPICZ Assay of Recombinant N-Acetylglucosaminidase ActivityThe supernatants of yeast expressing soluble forms of the N-acetylglucosaminidases were incubated with the different substrates at 37 °C for 1-20 h. For experiments with p-nitrophenyl-GlcNAc, the substrate concentration was 5 mM in a total volume of 0.04 ml of 0.1 M citrate/phosphate buffer at pH 3-8. The reactions were terminated by the addition of 0.26 ml of 0.4 M glycine/NaOH buffer at pH 10.4, and absorbance at 405 nm was measured with a microtiter plate reader. Pyridylaminated oligosaccharides were used at a final concentration of 0.1 mM in a total volume of 0.02 ml of 0.1 M citrate/phosphate buffer at pH 3-8. Incubation was terminated by the addition of 0.18 ml of 20 mM ice-cold sodium borate. Aliquots of 0.05 ml were analyzed by reverse-phase HPLC as described previously (15, 20). Analysis of N-Glycan of Wild-type and Mutant DrosophilaAdult flies, either Canton S wild-type (0.65 g), fdl mutant (0.41g), or Df(2R)achi2 (0.107 g), were collected and anesthetized with CO2 before addition of 4 ml of water and boiling for 10 min. The preparation of N-glycans was then performed basically as previously described (32) using peptide N-glycosidase A digestion of peptic peptides. The released glycans were dried and suspended in water prior to either analysis of the underivatized N-glycans by MALDI-TOF MS or pyridylamination, which was performed according to Yamamoto et al. (33). In the case of fdl mutant, pyridylaminated oligosaccharides were then fractionated by reverse-phase chromatography as previously described (20). Fractions were collected, dried, resuspended in water, and analyzed by MALDI-TOF MS. For both underivatized and pyridylaminated N-glycans, MALDI-TOF MS was performed using a linear instrument (Dynamo, ThermoBioanalysis) using 2,5-dihydroxybenzoic acid as matrix. Immunoelectron MicroscopyThe full-length fdl cDNA was cloned in-frame with a gfp sequence at the 3'-end into a derivative of the pRMHA3 vector, which includes a metallothionein promoter. Drosophila S2 cells were then transfected using Effectene reagent (Qiagen) following the manufacturer's protocol for adherent cells with minor modifications. The cells (4 x 105 cells per 35-mm well) were transfected with 4 µg of plasmid using 16 µl of Enhancer solution and 50 µl of Effectene reagent. 48 h post-transfection, CuSO4 was added to 1 mM final concentration, and cells were induced for 18 h followed by a 2-h chase. Medium was then aspirated, and the cells were fixed in 4% paraformaldehyde in 0.1 M phosphate buffer, pH 7.4, and processed for immunoelectron microscopy as described earlier (34). 60- to 80-nm cryosections were cut on an UltraS (Leica) and immunolabeled using the anti-GFP rabbit polyclonal antibody (Molecular Probes) followed by protein A conjugated to 10 nm gold particles.
Identification and Cloning of Drosophila N-Acetylglucosaminidases Our hypothesis was that the putative insect Golgi hexosaminidase would be homologous to known hexosaminidases. Thus we performed tBLASTn searches of the Drosophila genome and found three obvious fly homologues (CG1318, CG1787, and CG8824) of the human lysosomal hexosaminidases HEXA and HEXB. Indeed, these homologues have been previously assigned to the glycohydrolase family 20 in the CAZy data base (35). The first two have been previously named HEXO1 and HEXO2, encoded by genes localized on chromosomes 3L and X, respectively, and seem to be most related to a chitooligosaccharidolytic -N-acetylglucosaminidase from Bombyx mori (36) and possibly correspond to two proteins with both -N-acetylglucosaminidase and -N-acetylgalactosaminidase activity purified from Drosophila sperm (37). The third sequence is encoded by the recently identified fdl gene, located on chromosome 2R, so named because of the mushroom body fused lobes phenotype of the corresponding Drosophila mutant (27).
Subsequently, all three cDNAs were amplified by RT-PCR from total RNA isolated from Drosophila S2 cells. The RT-PCR products were of the expected size (
At the amino acid level, the Drosophila FDL sequence, which is predicted to be a type II transmembrane protein, shares 33% amino acid sequence identity and 64% sequence similarity with the fly HEXO1 and 31% sequence identity and 62% sequence similarity with the fly HEXO2 (Fig. 1). The predictions by WoLF PSORT would suggest that both HEXO1 and FDL are plasma membrane proteins, whereas HEXO2 is most likely to be secreted. A phylogenetic analysis suggests that amongst insect hexosaminidases there are two major groups. The first is composed of enzymes related to the aforementioned -N-acetylglucosaminidase from B. mori (36) and includes DmHEXO1 as well as DmHEXO2. The second group contains the homologues of DmFDL for which we could find predicted sequences from honeybee Apis mellifera, tsetse fly Glossina morsitans morsitans, and the mosquito Anopheles gambiae (Fig. 2). Of all the available putative insect N-acetylglucosaminidase sequences, FDL is most similar to the incomplete mosquito sequence, AgFDL, sharing 64% sequence identity and 90% sequence similarity over a stretch of 449 amino acids. All insect hexosaminidase sequences are phylogenetically distant from the lysosomal mammalian hexosaminidases (38) and even more distant from the group of NagA hexosaminidases previously characterized in fungi (39).
Characterization of Recombinant Drosophila-processing N-AcetylglucosaminidaseA soluble form of the Drosophila processing N-acetylglucosaminidase lacking the first 29 amino acid residues (i.e. lacking the putative cytoplasmic and transmembrane domains) was amplified by RT-PCR, and the resulting DNA fragment was cloned into the pPICZ
To determine the specificities toward natural substrates, the enzymatic activities of HEXO1, HEXO2, and FDL were subsequently evaluated by reversed-phase HPLC with N-glycans, such as GnGn-PA (see Fig. 3 for structure). Based on previous analyses (40), the removal of the GlcNAc residue from the 1,3-arm to generate GnM is predicted to result in a shift to longer retention times, whereas removal of the residue from the 1,6-arm to generate MGn causes a reduction in retention time as compared with GnGn.
After 1 h of incubation of FDL with this substrate, a small peak of greater retention time could be observed that co-eluted with a GnM standard (Fig. 4C); after 16 h the reaction was complete (Fig. 4D). On the other hand, the formation of GnM-PA was not observed when the supernatant of untransformed P. pastoris was used in the reaction (Fig. 4A), indicating that the conversion observed is due to the recombinantly expressed protein. Furthermore, there is no formation by FDL of either MM-PA or MGn-PA from GnGn-PA, which illustrates its branch specificity and its ability to remove exclusively the GlcNAc linked to the However, in contrast to data on the Sf-9 microsomal hexosaminidase activity, FDL did not digest chitotriose, as judged by an HPLC-based assay using chitotriose-PA (GlcNAc3-PA) as substrate. This discrepancy might be due to the presence of a distinct hexosaminidase activity in the Sf9 microsome preparation. Our present results, therefore strongly indicate that FDL is not involved in chitin degradation. On the other hand, both HEXO1 and HEXO2 displayed chitotriose-degrading activity. All assays performed consistently indicated that N-glycans are not substrates for either HEXO1 or HEXO2 (data not shown). This result was expected considering their close relationship to the B. mori hexosaminidase (36). As a result of the data showing that only FDL possessed the activity most reminiscent of the Golgi hexosaminidase from Sf9 cells, we concentrated our subsequent studies on this protein. The recombinant FDL was, therefore, tested for its ability to degrade an extended range of substrates such as GnM-PA, MGn-PA, pNP-GalNAc, and pNP-GlcNAc under different pH conditions (Fig. 5). Amongst the oligosaccharide substrates, GnGn-PA was found to be the most suitable substrate, followed by MGn-PA, whereas GnM was not digested. Other data indicated that FDL did not degrade Man5Gn-PA, thus illustrating that FDL requires the prior action of mannosidase II, whereas a dabsylated MGnF6 glycopeptide was a substrate (data not shown). This latter result shows that core fucosylation, which requires the presence of GlcNAc-1, does not prevent the action of FDL.
When an artificial substrate carrying only one GlcNAc, i.e. pNP-GlcNAc, was used, the pH optimum (pH 4.5) was one unit lower than that determined when using a pyridylaminated N-glycan (pH 5.5); this is also consistent with the previous data on the insect microsomal hexosaminidase (20) and is probably due to the higher acidity of the aryl hydroxyl group. FDL does not act on pNP-GalNAc (data not shown) and seems therefore to have no N-acetylgalactosaminidase activity. Therefore it would appear not to correspond to the hexosaminidases previously partially characterized from either Drosophila Kc cells or Drosophila spermatozoa, which display both N-acetylgalactosaminidase and N-acetylglucosaminidase activities (37, 41, 42).
Further experiments concerning the enzymatic requirement and inhibition of FDL were conducted with pNP-GlcNAc as the substrate (data not shown). No activation by divalent cation could be found, whereas FDL was strongly inhibited by Cu2+, Ni2+, and Zn2+. Three hexosaminidase inhibitors (mannosamine, 6-acetamido-6-deoxycastanospermine (NACS) and 2-acetamido-1,2-dideoxynojirimycin) were also tested for their effect on the recombinant FDL. The inhibition profiles obtained with NACS and 2-acetamido-1,2-dideoxynojirimycin are very similar, and >50% inhibition is observed at a concentration of 0.05 mM. This is comparable with the reported inhibition of the membrane-bound hexosaminidase from Sf-9 cells by NACS showing 50% inhibition at 0.06 mM (20). FDL is also inhibited by mannosamine, and interpolation of our results at 10 and 30 mM indicate that Subcellular Localization of FDL by Electron MicroscopyAs nearly all late glycosylation reactions occur in the Golgi apparatus, we set out to determine the subcellular localization of FDL by expressing a C-terminally GFP-tagged version of the full-length protein in Drosophila S2 cells under control of an inducible promoter. Preliminary results with confocal microscopy showed a punctuated pattern but no colocalization of the labeling with the Golgi marker BODIPY ceramide; therefore, the localization of the fusion protein was assessed by immunoelectron microscopy. The transfected cells were fixed and processed, and ultrathin cryosections were immunolabeled using an anti-GFP rabbit polyclonal antibody followed by protein A conjugated to gold particles. The fusion protein is found in all compartments of the secretion pathway, the endoplasmic reticulum, and the Golgi apparatus but at a much higher level on the plasma membrane and in multivesicular bodies representing late endosomes (Fig. 6, A and B). In addition, the high level of labeling observed extracellularly shows that the protein is also, to a large extent, secreted into the medium. This is consistent with the notion that FDL only transits through the Golgi apparatus en route to the plasma membrane and is not a resident enzyme of this organelle. Even in cells showing a very high level of expression, the Golgi apparatus did not exhibit an exaggerated labeling (Fig. 6, C and C'); this contrasts with observations on Golgi glycosyltransferases such as Fringe.5 The FDL localization in the late endosomes might result from either direct targeting to the endosomal compartment after the transit through the Golgi apparatus or from the endocytosis of FDL after its transport to both the plasma membrane and the medium.
Comparison of N-Glycans from Wild-type and Mutant FliesTo investigate whether FDL was responsible for the conversion of Drosophila N-glycans to the paucimannosidic type in vivo, N-glycan analyses were conducted on flies with either a hypomorphic (fdl) or complete (Df(2R)achi2 mutant) deficiency in the fdl gene. The N-glycans released by peptide N-glycosidase A from glycopeptides obtained after peptic digestion of the fly samples were subjected to mass spectrometry analysis (Fig. 7 and Table 1) and, in the case of fdl, to HPLC (data not shown).
The N-glycan patterns obtained with these mutants were compared with the profile of the wild-type flies (Canton S). As previously described (5, 43), the dominant structures present in normal adult flies are of paucimannosidic or oligomannosidic type and indeed MMF6 accounts for more than 40% of the total N-glycans. On the other hand, in the hypomorphic fdl mutant, the occurrence of paucimannosidic N-glycans decreases from 62% to 30%, although there is no change in the percentage of oligomannosidic structures. At the same time, the amount of N-glycans carrying at least one elongated antenna increases dramatically in the fdl flies, from 1% to 33% of the structures. Among these, the main structure is MGnF6 (as assessed by its HPLC retention time; data not shown). Furthermore, in this mutant, complex glycans (with two GlcNAc residues), which were not detectable in Canton S flies, represent 4% of the total amount of N-glycans (Table 1). These effects are accentuated in the Df(2R)achi2 mutant, which lacks the entire fdl gene as well as five others, achintya, vismay, CG30044, CG12370, and CG13156, none of which are predicted to have a role in N-glycan modification. In addition to a very strong overrepresentation of the oligomannosidic structure Man9, the abundance of paucimannosidic structures in this mutant is reduced 7-fold as compared with wild-type flies (Table 1). Thus, the glycan analysis indicates that FDL has an important role in the biosynthesis of the major wild-type N-glycans in Drosophila.
The class 20 glycosidase family encompasses a range of -hexosaminidases from bacteria, plants, fungi, and animals normally associated with catabolism of glycoconjugates. Probably the two most well known examples are the mammalian lysosomal -hexosaminidases, encoded by the HEXA and HEXB genes, mutations of which are associated with the Tay-Sachs and Sandhoff diseases and result in severe neurological symptoms (44). In Drosophila, there are three obvious homologues of this glycosidase class and, remarkably, mutations in one of the corresponding genes, fdl, have been previously demonstrated (27) to affect normal development of the fly brain; the major anatomical changes noted concerned the mushroom body lobes, which were fused in homozygous adults. Another mutant for the same gene (Df(2R)achi2) has been generated (26). According to the authors, the severe phenotypic changes observed for this mutant can be mainly attributed to another gene (Achi), and no conclusion can be drawn from this mutant concerning the morphological effect of an fdl deletion. Nevertheless, as shown in the present study, FDL is a hexosaminidase with a profound effect on oligosaccharide structure; as judged by the types of oligosaccharide structures present in fdl flies, we hypothesize it has a primary role during the biosynthesis, rather than the catabolism, of N-glycans. That N-glycan processing also has a role in development is dramatically shown by the congenital disorders of glycosylation in humans and in a number of mouse and Arabidopsis models (45-47). The defective development of the homozygote fdl mutant, as well as the "rough eye" phenotype of a fly mannosidase II mutant (48), seems to indicate that N-glycan trimming is also essential for normal development in insects.
Because the original fdl mutant was hypomorphic, i.e. displays some residual activity (27), and still contains some residual MMF/MM structures, it was decided to examine whether a completely deficient mutant displayed a stronger molecular phenotype. Examination of the Flybase entry for fdl indicated that another mutant (Df(2R)achi2) was also predicted to have a defect in this gene. Indeed, a drastic difference in the N-glycan composition could be observed between the wild-type flies and Df(2R)achi2 mutant, the latter exhibiting an One of the main differences between vertebrate and insect N-linked glycosylation is the presence of the paucimannosidic N-glycans structures in the latter. This type of structure is also present in C. elegans (52), and indeed a membrane-bound N-acetylglucosaminidase has been detected in nematode microsomes (53). Paucimannosidic structures are furthermore a common feature of plant N-glycans, but in plants the occurrence of more complex structures carrying the Lewis a epitope is relatively common (54). In fact, it seems that the processing of plant N-glycans to the paucimannosidic type is a process affecting specifically glycoproteins targeted to the vacuole (18, 55). Therefore, it is assumed that the plant N-acetylglucosaminidase involved in this degradation process is either localized in the vacuole itself or in a prevacuolar compartment distinct from the Golgi apparatus. On the contrary, in insects, the N-glycan-trimming hexosaminidase activity previously characterized (20), which we now have identified as FDL, is not localized in the lysosomal compartment. The localization of FDL was examined by use of C-terminal GFP and Myc fusions, this being an established approach in such studies (56-59). Although we cannot rule out some artifactual localization, both fusion proteins showed the same distribution, i.e. that FDL mainly localizes to the plasma membrane, the late endosomes and the extracellular medium, and only to a minor extent in the Golgi apparatus. Although, these data deviate from the conclusions from the previous biochemical study (20), we expect that, other than perhaps some resident Golgi proteins, any glycoprotein leaving the Golgi apparatus, i.e. the vast majority of glycoproteins passing through the secretion pathway, is susceptible to the action of FDL. This is of major importance for biotechnological application, because recombinant therapeutic glycoproteins produced in insect cells are generally secreted into the cell medium and therefore come into contact with FDL and its orthologues. This would be an explanation as to why the vast majority of recombinant proteins expressed in insect cells carries predominantly paucimannosidic structures (1, 19, 60, 61).
The capacity of insect cells to synthesize complex N-glycans has been a matter of some controversy. Indeed, recent studies show that the genome of Drosophila encodes two N-acetylgalactosaminyltransferases (62) and a sialyltransferase (63); whereas Trichoplusia ni has a proven GalNAc-transferase that could in theory participate in the synthesis of complex N-glycans (64). However, to date there is no published evidence for such structures in adult flies (although some complex structures such as fucosylated LacdiNAc are found on bee venom glycoproteins (9)). Thus, to overcome the difference in N-glycosylation of recombinant glycoproteins produced in insect cells and those derived from mammalian sources, several approaches to making insect cell systems suitable for the production of therapeutic glycoproteins have been attempted. One of the main targets in this quest has been to increase the amount of structures carrying a GlcNAc residue linked to the
* This work was supported by the Austrian Science Fund (Grants S8803 to F. A. and P17681 [GenBank] to I. B. H. W.) and by a Glycoscience Research Award from Neose Technologies (to I. B. H. W.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 Both authors have contributed equally to this work. 2 To whom correspondence should be addressed: Tel.: 43-1-36006-6065; Fax: 43-1-36006-6059; E-mail: renaud.leonard{at}boku.ac.at.
3 The abbreviations used are: GlcNAc-1, the non-reducing terminal GlcNAc on the
4 Abbreviations of N-glycan structures (GnGn, MMF6, etc.) are explained in Fig. 3.
5 C. Rabouille, unpublished observations.
We thank Dr. Robert A. H. White for supplying us with the Df(2R)achi2 mutant, Drs. Jan Mucha and Wolfgang Ernst for advice on cell transfection, Monika Bencúrová and Katharina Paschinger who performed the activity tests with GnGnF6 and Man5Gn, Chunsheng Jin and Martin Gutternigg for their help in collecting flies, Karin Polacsek who helped with the N-glycan preparation, and Denise Kerner for maintaining flies. The Drosophila S2 cells were kindly provided by Gerald Aichinger from Intercell AG, A-1030 Vienna. We thank Despina Xanthakis and Adrian Oprins for help with the cryosectioning and immunolocalization of FDL, Dr. Alberto Pascual for sharing unpublished information and Vangelis Kondylis for advice on the transfection of S2 cells.
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