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J. Biol. Chem., Vol. 282, Issue 12, 8848-8859, March 23, 2007
Identification, Expression, and Functional Analyses of a Thylakoid ATP/ADP Carrier from Arabidopsis*
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| ABSTRACT |
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| INTRODUCTION |
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800 membrane proteins have been identified by proteomics in the envelope and thylakoid membranes of Arabidopsis thaliana (for reviews, see Refs. 1 and 2). As expected, the main function for the identified envelope proteins was transport of ions and metabolites, whereas photosynthesis was attributed to most of the identified thylakoid proteins. The major protein complexes in thylakoids are photosystems (PS)4 I and II, the cytochrome b6 f complex, and the proton-translocating ATP synthase. These photosynthetic complexes contain not only proteins but also pigments and other cofactors. Their assembly, activity, and removal require a large number of auxiliary, regulatory, and transport proteins (3, 4). Many biochemical reports pointed to the existence of transport activities in the thylakoid membrane, such as calcium transport (5), copper transport (6), anion channels (7), cation channels (8, 9), and nucleotide transport (10). Only the thylakoid copper transporter was identified at the genetic level in Arabidopsis (11). No hydrophobic proteins related to the above-mentioned transport activities were identified in the previous proteomic works on Arabidopsis thylakoid membranes (for a review, see Ref. 2). Therefore, genetic strategies are required for identification and elucidation of their role in optimal function of the thylakoid.
ATP is produced during the light-dependent photosynthetic reactions on the stromal side of the thylakoid membrane. Besides its utilization during CO2 fixation in the stroma, ATP drives many energy-dependent processes in thylakoids, including protein phosphorylation, folding, import, and degradation. Alternatively, ATP is transported across the membrane into the lumenal space and converted to GTP by a nucleoside diphosphate kinase, NDPK3 (10). There are also several recent indications for the presence of phosphorylated proteins in the thylakoid lumen of green algae and plants, as provided by mass spectrometry analyses (12, 13). The transport of ATP across the thylakoid membrane proceeds via a nucleotide-binding protein of 36.5 kDa (10). This protein is homologous to the bovine mitochondrial ADP/ATP carrier (AAC), which is the most studied member of the mitochondrial carrier family (MCF, Prosite PS50920). The structure of the bovine AAC was solved by x-ray crystallography at 2.2 Å of resolution in the presence of carboxyatractyloside (14). In Arabidopsis there are three genes encoding for mitochondrial AACs (15). All three proteins were identified in the mitochondrial proteome (16) and were shown to transport adenine nucleotides when expressed in heterologous system (17). The protein(s) responsible for the thylakoid ATP transport activity (10) have not yet been isolated or identified at the genetic level.
In this work we provide computer-based and experimental evidence that the product of the Arabidopsis At5g01500 gene is a thylakoid ATP/ADP carrier (TAAC). In a previous proteomic study this protein was concluded to be localized in the chloroplast (inner) envelope (18). Here we demonstrate a major thylakoid and a minor envelope location for the TAAC protein. Our studies also show that TAAC is readily expressed in Arabidopsis dark-grown seedlings and appears to be needed for both synthesis of photosynthetic complexes during greening and for their recycling during senescence and stress.
| EXPERIMENTAL PROCEDURES |
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Arabidopsis (cv. Wassilewskaja) seeds of the T-DNA insertion line FLAG 443D03 (taac mutant, supplemental Fig. S1A) were obtained from PublicLines at Institut National de la Recherche Agronomique. For screening of homozygous mutant plants, genomic DNA isolated from wild type (WT) and the taac mutant was analyzed by two sets of PCR reactions using gene-specific forward 5'-AGAACAACGTGTCGTCGAATC-3' and reverse 5'-CAACACCATTCTTTCCAAAAGG-3' primers and the T-DNA left border 5'-TGGTTCACGTAGTGGGCCATCG-3' primer (supplemental Fig. S1B). Homozygoty was confirmed in the next generation.
Structural AnalysesHomology and orthology searches using BLAST were performed in MIPS, TIGR, and Cyanobase. Prediction of intracellular location and membrane topology were performed using TargetP, the PPDB data base, and a package of programs at ARAMEMNON website. The amino acid sequences were aligned with ClustalW.
A structural homology model of the Arabidopsis TAAC protein was built from its amino acid sequence by use of several local structure and fold recognition methods at the MetaServer (20). The established structure of the protein with the highest scores (bovine AAC; PDB code 1okc A) was used as template, and the comparison was done using the Swiss-Model program (21). The calculated three-dimensional model was obtained by optimally satisfying spatial restraints derived from the 3D-Jury sequence alignment. Analysis of the TAAC structural model was performed by use of the DeepView/Swiss-PdbViewer program and also by use of Insight II software (Version 2005) on the Octane work station by Silicon Graphics. The structural model shown (Fig. 1D) was produced by use of the latter.
Transient Expression of a TAAC-GFP Fusion Construct and Microscope AnalysisThe entire coding region of the TAAC gene was amplified by PCR using an Arabidopsis CD414 cDNA library (22) and subcloned into the expression vector pDR303. In the resulting pNL1500 plasmid the TAAC sequence was fused in-frame to the 5'-end of a green fluorescent protein (GFP) coding sequence and placed under the control of the transcriptional 35S promoter from the cauliflower mosaic virus (CaMV35S). This plasmid was introduced into tobacco leaf protoplasts by electroporation. After 24 h of incubation in darkness, protoplasts were imaged using a confocal laser-scanning microscope. The detailed protocols for construct design, protoplast isolation, electroporation, and microscope analysis are described under supplemental "Experimental Procedures."
Chloroplast Membrane PreparationsArabidopsis chloroplasts were prepared (23) and lysed in 50 mM Tricine/KOH (pH 7.6) and 5 mM MgCl2 (Tricine buffer) for 10 min on ice. Thylakoids and envelope membranes were purified from the lysate by centrifugation at 113,000 x g for 1 h on sucrose step gradient (0.6, 0.93, 1.2, and 1.5 M sucrose). Thylakoids were collected at the 1.2/1.5 M interface, diluted with Tricine buffer, and centrifuged at 10,000 x g for 10 min. Envelope membranes were collected at the 0.93/1.2 M interface, diluted with Tricine buffer, and centrifuged at 10,000 x g for 10 min (to discard thylakoid vesicles) followed by 150,000 x g for 30 min. The thylakoids and envelope membranes were finally resuspended in Tricine buffer supplemented with 0.3 M sucrose. Chlorophyll (Chl) and protein concentrations were determined as described (24, 25). For topology studies, thylakoid membranes (0.2 mg of Chl ml-1) were treated with 1 M NaCl or 0.1 or 1% (w/v) Triton X-100 for 30 min on ice in darkness followed by centrifugation at 150,000 x g for 30 min. Both supernatants and pellets were analyzed by Western blotting.
Protein AnalysisSDS/PAGE and Western blotting were performed as described (26). An anti-TAAC antibody was produced in rabbit against a peptide corresponding to the last 15 residues at C terminus of the Arabidopsis protein and purified by affinity chromatography (Innovagen, Lund, Sweden). Where indicated, antibodies against the 110-kDa protein of the translocon of the chloroplast inner envelope membrane (TIC110, a gift from Prof. J. Soll), a light-harvesting Chl a/b-binding protein of PSII (Lhcb2, Agrisera, Umeå, Sweden), and an anti-Xpress antibody (Invitrogen) were also used.
Immunogold Electron MicroscopyArabidopsis rosette leaves were thinly diced and fixed overnight. After blocking in 1% (w/v) bovine serum albumin, the grids were incubated with the anti-TAAC antibody followed by incubation with goat anti-rabbit serum conjugated with colloidal gold particles, staining, and electron microscopy as earlier described (27). Detailed protocols are given under supplemental "Experimental Procedures."
Cloning, Heterologous Expression, and Purification of a Recombinant TAAC ProteinAll DNA manipulations, including PCR, restriction digestion, agarose gel electrophoresis, ligation, and transformation into Escherichia coli (E. coli) DH5
, were performed by standard procedures (28). The Arabidopsis TAAC gene was PCR-amplified with oligonucleotides designed to exclude the first 177 base pairs of the gene (corresponding to the predicted transit peptide), cloned, and recombined as a fusion construct with an N-terminal hexahistidine tag followed by Xpress epitope and a C-terminal FLAG epitope (DYKD-DDDK) into a pTrcHisB plasmid for expression in E. coli. Such a set-up has previously been employed to purify another membrane-embedded protein (29). The detailed protocols are given under supplemental "Experimental Procedures."
Uptake of Radioactive ATP and ADP into E. coli CellsFor uptake experiments cells transformed with the TAAC-expressing plasmid (or control expression plasmid) were induced with isopropyl 1-thio-
,D-galactopyranoside (IPTG) for 6 h in Terrific Broth medium supplemented with 10 mM malate and 10 mM pyruvate (17). Uptake experiments were carried out according to Haferkamp et al. (17) and Tjaden et al. (30) with a few modifications. Cells (30 µl, 100 µg µl-1) were incubated in 50 mM phosphate buffer (pH 7.0) containing 50 µM [
-32P]ATP (500 mCi/mmol; 1 µCi = 37 kBq, Amersham Biosciences) or [
-32P]ADP, prepared according to Tjaden et al. (30) at 30 °C for the indicated time periods. Where indicated, the uptake experiments were carried out in the presence of 2.5 mM various nonlabeled nucleotides. For determination of the transport affinity (Km) and the maximal rate (Vmax), uptake of a range of concentrations (0250 µM) of [
-32P]ATP or [
-32P]ADP was carried out in E. coli cells preincubated or not with 100 µM m-chlorocarbonyl cyanide phenylhydrazone (CCCP) for uncoupling. The cells were thereafter quickly filtrated through a 0.45-µm filter (Pall, New York) under vacuum and washed three times with 1 ml of ice-cold phosphate buffer. The radioactivity retained on the filters was quantified in 3.5 ml of water using scintillation spectrometry. Back exchange experiments were carried out essentially as previously described (17, 30). The detailed protocol is provided under supplemental "Experimental Procedures."
Uptake of Radioactive ATP into Thylakoids and Assay of NDPK ActivityArabidopsis thylakoids (30 µl, 0.3 µg of Chl µl-1) were incubated in Tricine buffer containing 10 µM [
-32P]ATP in darkness at 22 °C for the indicated periods of time. In some experiments the uptake was carried out using 050 µM [
-32P]ATP or in the presence of 1 mM nonlabeled nucleotides. The thylakoids were washed twice and recovered by rapid centrifugation (45 s, 13,000 x g), and their radioactivity was counted in 1 ml of water. Control experiments in the presence of 10 mM nonlabeled ATP indicated 10% nonspecific binding. This value was substracted from all measured activities. Back exchange experiments were performed essentially as described for E. coli. Details are given under supplemental "Experimental Procedures." NDPK activity was assayed as the amount of [
-32P]GTP produced from 1 mM [
-32P]ATP (12.5 Ci/mmol) and 1 mM GDP, as described (10).
RNA Extraction and Northern Blot AnalysisTotal RNA was extracted from frozen Arabidopsis tissues using TRIzol® and Plant RNA Purification Reagent (Invitrogen) or RNeasy Kit (Qiagen, Germantown, CA) according to the manufacturer's instructions. Equal amounts (510 µg) of RNA were separated on a 1.2% (w/v) denaturating formaldehyde/agarose gel and transferred to a positively charged nylon membrane (Roche Applied Science) (28). The TAAC probe was obtained by PCR amplification of a 430-bp fragment using the At5g01500 cDNA as template and the digoxigenin (DIG)-labeled deoxynucleotide mixture (Roche Applied Science). The following PCR primers were used: forward, 5'-GGCACCGCTTGACCGAATAA, and reverse, 5'-AAGCGAAGGACCTAGACCGTTGTA. Hybridization was carried out according to the instructions in the DIG-Nonradioactive Nucleic Acid Labeling and Detection System (Roche Applied Science).
| RESULTS |
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The encoded Arabidopsis TAAC protein contains 415 amino acids and an N-terminal chloroplast transit peptide (amino acids 159), as indicated by TargetP (score 0.764, RC3) (Fig. 1A). Using advanced bioinformatics analysis for intra-chloroplast protein sorting (32), a low cysteine content (0.07%) and a negative GRAVY index (-0.079) were determined (data extracted from PPDB) that are in favor of a thylakoid rather than envelope location for this putative protein. Nevertheless, it was annotated as an envelope protein due to its high hydrophobicity, high isoelectric point, and putative carrier function (18). Notably, two proteomic studies disagree on the envelope localization of the At5g01500 gene product (18, 33).
The mature form shows 28% identity (43% similarity) to the bovine AAC protein (bAAC). The TAAC termini are 50 (N) and 30 (C) residues, respectively, longer than the corresponding regions in bAAC and are rich in both positively and negatively charged residues (Fig. 1A). The presence of a five-glycine repeat in the middle of the N terminus indicates that this region may undergo large conformational changes that could regulate TAAC activity. A ring of four well conserved positively charged residues (Lys-22, Arg-79, Tyr-186, and Arg-279 in bAAC) was proposed to act as a selectivity filter for adenine nucleotides in all AACs (14, 34). The alignment (Fig. 1A) shows that these residues are also conserved in TAAC (Lys-130, Arg-186, Tyr-282, Lys-369), suggesting a possible substrate preference for adenine nucleotides. As was found in all MCF members, TAAC contains three repeated homologous regions, with highly conserved consensus sequences (Fig. 1B). The unique AAC signature (RRRMMM) in the third repeat region is only partially conserved in TAAC (RRqMql, where the lowercase letters indicate nonconserved residues), as in the case of two other AACs (34). The relevance of this signature for binding and/or transport of adenine nucleotides is not clearly understood. Nevertheless, the detailed analysis of the bovine AAC x-ray structure indicated that only the first two arginines (also conserved in TAAC) interact with carboxyatractyloside (34).
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The TAAC amino acid sequence was analyzed for structural homologues at the MetaServer (20). As expected, substantial structural similarities to the bovine AAC (PDB 1okc A) were identified, and a highly significant 3D-Jury homology score (140.2) was provided. The presented structural homology model of TAAC (Fig. 1D) is limited to amino acid residues 110384, excluding the large N and C termini, which have no correspondence in the bovine AAC. Like the bovine protein, the overall structure is basket-shaped, with a closure on the stromal side and opening on the lumenal side (Fig. 1D, side view). The backbone exhibits a pseudo-3-fold symmetry due to the presence of three repeated homologous domains. The TMDs form a cavity that enters deeply into the protein, and the four indicated residues making up the selective filter (Lys-130, Arg-186, Tyr-282, Lys-369) surround the bottleneck of the cavity (Fig. 1D, lumenal view). Taken together, the structural analyses indicate that the product of the At5g01500 gene possesses a chloroplast transit peptide as well as the characteristic sequence features of a MCF and AAC member.
In Vivo and in Vitro Localization Studies of the TAAC ProteinThe targeting of a TAAC-GFP construct was investigated in tobacco leaf protoplasts (Fig. 2A). As shown in the merge image (Fig. 2D), GFP fluorescence (Fig. 2B) and Chl red autofluorescence (Fig. 2C) colocalized. These data show that TAAC is efficiently targeted to the chloroplast. However, no information about the intra-chloroplast localization could be obtained.
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Treatment with 1 M NaCl or 0.1% (w/v) Triton X-100 rendered the 36.5-kDa protein band in the membrane fraction, as in the case of control thylakoids (Fig. 3B). Only treatment with 1% (w/v) Triton X-100 solubilized the TAAC protein, indicating that this is a membrane-spanning protein and supporting the TMDs prediction data (Fig. 1).
The TAAC protein was immunolocalized on cryosections containing mesophyll cells of Arabidopsis rosette leaves, using serial dilutions of the TAAC antibody. Specific labeling was obtained at 1:50 dilution of the antibody. The analysis of several sections showed that the immunogold particles were mainly found in chloroplasts (Fig. 4). Particles were also occasionally detected on peroxisomes (data not shown). The nucleus, cell wall, vacuole, cytosol, and organelles including mitochondria were not labeled (Fig. 4A). In chloroplasts the distribution of the immunogold particles, which reflects the distribution of the TAAC protein, was nonuniform. The particles were mostly associated with the stroma-exposed regions of the thylakoid membrane and of the grana stacks (Fig. 4, B and C), as also demonstrated for the chloroplast ATP synthase (35), and rarely associated with the stroma and envelope (Fig. 4A) or inside the grana stacks (Fig. 4D). Control sections, without primary antibodies, were not labeled (Fig. 4E). Taken together these studies demonstrate a chloroplast location for the TAAC protein, mainly in the thylakoid membrane.
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-32P]ATP and [
-32P]ADP into intact E. coli cells expressing the recombinant TAAC protein. In the background, non-time-dependent binding of nucleotides was observed in IPTG-treated cells lacking the TAAC insert, representing a maximum of 19 and 23% of the assayed uptake of ATP and ADP, respectively. Furthermore, radioactive nucleotides were detected in washed and disrupted expressing cells (see Fig. 4D) but not in the control cells (data not shown), indicating that the assayed transport activity is dependent on the presence of the TAAC protein. The ratio of ATP to ADP uptake was about 2.2, suggesting a preferred import of ATP versus ADP into E. coli cells. This is opposite to the preferred import of ADP versus ATP by heterologously expressed Arabidopsis mitochondrial AACs (17). For determination of the Km and Vmax values of the TAAC-catalyzed transport, the E. coli cells were incubated with 0250 µM radioactive adenine nucleotides for 1 min (supplemental Fig. S2). The apparent Km values for ATP and ADP (supplemental Table S1) were about 45 µM, i.e. intermediate between those reported for Arabidopsis (1015 µM) and mammalian (100150 µM) AACs when expressed and assayed in E. coli cells (17). The calculated Vmax value for ATP and ADP uptake were 0.71 and 0.53 nmol mg-1 protein h-1 (supplemental Table S1). Both Vmax values are in the same range as those determined for the Arabidopsis mitochondrial AACs expressed in E. coli, i.e. 0.184.41 nmol mg-1 protein h-1 (17).
The presence of CCCP increased the apparent Km value of TAAC for ATP to 170 µM and the corresponding Vmax value to 1.79 nmol mg-1 protein h-1 (supplemental Fig. S2 and Table S1). The corresponding values for ADP were not affected by the presence of CCCP. The fact that TAAC has a lower affinity for binding ATP in non-energized E. coli membranes could be due to a protein conformational change such that the substrate becomes loosely bound and is faster released on the other side of the membrane. The Km values were only slightly lowered by CCCP in the case of the mitochondrial AACs expressed in E. coli (17). The mechanistic reason for this discrepancy with respect to CCCP is not known. Nevertheless, the TAAC transport activity shows other differences as well. For example, export of ADP by TAAC is inhibited by CCCP (see below), at variance with the same activity performed by the mitochondrial AACs (17).
To investigate the nucleotide transport specificity of TAAC, we performed uptake of [
-32P]ATP into E. coli cells expressing the recombinant protein in the presence of excess of various nonlabeled nucleotides (Fig. 5C). In comparison with the control uptake, ATP competed with the highest efficiency (83%) closely followed by ADP (60%). The guanine nucleotides did not affect the ATP uptake, suggesting that although they could bind to the carrier protein (10), they are not substrates for transport. ADP-glucose (Fig. 5C) and phosphate (data not shown) did not compete with the ATP uptake, indicating that TAAC is not involved in neither nucleotide-sugar nor phosphate transport. The competition data strongly support that Arabidopsis TAAC specifically transports adenine nucleotides, as reported for mammalian AACs, and in contrast to maize AAC, which can also transport guanine nucleotides (Ref. 36 and references therein).
Most MCF members catalyze strict solute exchange reactions. TAAC-expressing E. coli cells were preloaded with [
-32P]ATP followed by back exchange with nonlabeled external substrates, and the released nucleotides were separated by thin layer chromatography (TLC). As shown in Fig. 5D, disrupted preloaded cells contained both radioactive ATP and ADP, indicating that an uptake of ATP had taken place and that part of it was converted to ADP in the cytosol. No significant amount of radioactive nucleotides was released after the addition of buffer. A preferential export of [
-32P]ADP occurred during the back exchange with externally added adenine nucleotides and was effectively inhibited by CCCP (Fig. 5D).
In Planta Functional Analyses of the TAAC ProteinThe nucleotide uptake and exchange data obtained from functional expression of the recombinant TAAC in E. coli were compared with those in Arabidopsis thylakoids. All experiments using thylakoids were carried out in darkness when ATP binding and hydrolysis by the catalytic portion (CF1) of the ATP synthase is extremely low (Refs. 37 and 38 and references therein). Under our experimental conditions, the uptake of [
-32P]ATP into thylakoids had a fast linear phase (up to 1 min) and reached a plateau level of 150 pmol of ATP/mg Chl within about 5 min (supplemental Fig. S3A). The estimated apparent Km for ATP was about 0.5 µM, (supplemental Fig. S3B), i.e. a significantly lower value than the Km of the recombinant TAAC as determined in E. coli (47 µM, supplemental Table S1). Another difference from TAAC-mediated transport in E. coli is that, in addition to ATP and ADP, GDP also competed with the uptake of [
-32P]ATP in thylakoids (supplemental Fig. S3C). These data imply that, in addition to TAAC, there exist other sites for ATP binding and transport in thylakoids, including the previously characterized binding to the ATP synthase (37, 39, 40). Nevertheless, our data also indicate similar kinetics to the ones reported for nucleotide uptake (by AACs) in isolated mitochondria (17, 41).
To investigate the internal affinities of thylakoids for adenine nucleotides, we carried out back exchange experiments in thylakoids preloaded with [
-32P]ATP (supplemental Fig. S3D). Preloaded thylakoids contained radioactive ATP and ADP in a ratio of about 4:1 and showed a preferential export of [
-32P]ADP, supporting the data obtained for TAAC in E. coli cells (Fig. 5D). Because incubation with ADP is known to abolish the ATPase activity of CF1 (38), its interference in the observed exchange is not very likely. The fact that even GDP induced export of ADP (supplemental Fig. S3D) has significance for the previously characterized NDPK activity in the thylakoid lumen (10). Because GDP competed with ATP uptake and induced ADP export, there must exist another transport system than TAAC for GDP in thylakoids.
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-32P]ATP into dark-incubated thylakoids isolated from the taac mutant was reduced to 37% (at 1 min) and 68% (at 5 min) of the WT levels (Fig. 6B). Interconversion of ATP to GTP in the thylakoids (via lumenal NDPK3) was reduced to 6070% of the WT levels (Fig. 6C). Additional phenotypic effects of TAAC disruption included about 40% reduction in the thylakoid content as compared with WT (expressed as mg Chl/g of leaf, supplemental Fig. S4), resulting in pale green leaves of the taac mutant.
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We also investigated expression during various leaf developmental stages (Fig. 7B). Our data revealed that the amount of the TAAC transcript was high in developing leaves, decreased during maturation, and increased again during senescence to levels exceeding those present in developing leaves. The TAAC level in the corresponding protein extracts generally followed the level of corresponding transcripts. Next, we assayed expression in leaves exposed to various abiotic stress conditions (Fig. 7C). Although the amounts of the TAAC transcript were increased during wounding, light stress, oxidative stress, salt stress, and desiccation, a drastic reduction was detected under heat shock conditions. Similarly, the exposure of leaves to low temperature led to a slight decrease in the TAAC transcript level. As before, the protein pattern resembled the one of the transcript. Finally, the TAAC expression was investigated in various Arabidopsis organs (Fig. 7D). The highest levels of TAAC transcript and protein were detected in developing photosynthetic organs such as leaves (see also Fig. 7B), flower buds, and green siliques followed by fully developed organs such as roots, flowers, cauline and rosette leaves, and least in the stem. For comparison, the mitochondrial AACs show a similar expression pattern in all tissues (36), pointing to a more general role in plant metabolism. High TAAC levels in Arabidopsis dark-grown seedlings in developing and senescent leaves may have relevance for initiation of biogenesis and turnover of the photosynthetic apparatus in the thylakoid membrane.
| DISCUSSION |
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Among photosynthetic organisms, ESTs from the green alga Chlamydomonas reinhardtii, maize, rice, wheat, potato, and soybean show 6080% identity to the Arabidopsis TAAC gene sequence, as revealed by orthologues search in TIGR databases. No homologues in the genome data base of cyanobacteria (Cyanobase) were found, supporting a previous bioinformatic report which suggested that MCFs are a later addition during the development of the eukaryotic cell (43).
Arabidopsis TAAC possesses the characteristic sequence features of MCF and AAC members (Fig. 1). Measurements of radioactive adenine nucleotide transport across E. coli membrane demonstrated that this protein is indeed an AAC, sharing similarities with but also differences from the mitochondrial homologues. The most striking difference is the ATP/ADP counter exchange catalyzed by TAAC (Fig. 5), which is opposite to ADP/ATP exchange by AAC across E. coli membrane (17). The pattern of adenine nucleotide exchange for both TAAC and AAC in organello is similar to the one obtained for the corresponding recombinant proteins expressed in E. coli but apparently opposite to each other (Fig. 8). The explanation resides in the fact that, structurally, the thylakoid membrane and its lumenal space represent intra-chloroplast compartments without correspondent in mitochondria. Nevertheless, the translocation of adenine nucleotides by TAAC and AAC proceeds in an analogous manner across thylakoid and mitochondrial inner membrane, namely from the site of ATP synthesis (stromal or matrix side) to the other side of the membrane (thylakoid lumen or mitochondrial intermembrane space) (Fig. 8).
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Data available in public microarrays collections, such as Genevestigator data base (45), indicated the highest levels of TAAC transcript in seeds followed by shoot apex and much lower similar levels in other tissues (flowers, roots, and rosette leaves). The same microarray data indicated high transcript levels in young leaves and petiole and low levels in senescent leaves. Our data show a different pattern, with the highest expression detected in dark-grown seedlings, developing green tissues (leaves, flower buds, siliques), and senescent leaves (Fig. 7). Expression in roots and flowers indicates the presence of the TAAC protein even in non-green plastids. Developing plastids, etioplasts, and to a lower extent also other types of plastids have in addition to envelope internal membranes that could convert to thylakoid membranes upon illumination (3). At least in developing plastids, the internal membranes are occasionally continuous with the envelope (3).
The TAAC protein is found readily expressed in dark-grown seedlings and should be very active during biogenesis of the photosynthetic apparatus, which starts only a few minutes after light exposure (46). The HCF136 protein is also produced in dark-grown seedlings and is kept at a stable level during light-induced greening (47). This protein was demonstrated to be located in the thylakoid membrane and must be present when PSII complexes are made in the stroma regions. Similarly to the HCF136 protein, TAAC has to be present before or at least concomitantly with the accumulation of photosynthetic complexes. It may supply various biosynthetic processes with ATP, which was shown to be produced in increasing amounts during embryonic photosynthesis (48).
In leaf chloroplasts, TAAC was detected mainly in the thylakoid but also in the envelope fraction to a lower extent (Fig. 3). Because a previous proteomic work (18) has identified TAAC in purified envelope preparations, one cannot exclude its presence also in the envelope. The localization of another MCF member in both mitochondria and chloroplast envelope has recently been reported (49). Furthermore, there are several examples of proteins involved in Chl synthesis, thylakoid biogenesis, and chloroplast morphology targeted to both envelope and thylakoid membranes (5052) that support our findings. What does a dual localization of TAAC mean? The level of TAAC transcript and protein peaked in young green tissues that undergo rapid plastid development and declined as the plant matured (Fig. 7). Furthermore, the thylakoid membrane was the predominant location under conditions in which mature tissues were used as a source of chloroplasts (Figs. 3 and 4). These observations imply that TAAC is needed to be present in the internal membranes of developing plastids more than in the thylakoids of mature chloroplasts. Its location depends on the developmental stage of plastids, and TAAC may have multiple functions. In premature chloroplasts it may be initially located in the envelope and participate in the development of internal membranes into thylakoid membranes. In contrast, in mature chloroplasts TAAC is mainly located in the thylakoid membrane and may have a role in its turnover.
We also detect increasing TAAC transcript levels under senescence and various abiotic stress treatments of leaves, in contrast to the Genevestigator data base reporting down-regulation and no change, respectively. We suggest a role for TAAC in supplying ATP into the thylakoid lumen for mobilization of N-resources (during senescence), for refolding of misfolded thylakoid proteins (during import), and for their degradation (during stress). Alternatively, it is converted to GTP in the thylakoid lumen (10), which via binding and hydrolysis by the extrinsic PsbO subunit of PSII complex stimulates the light-induced degradation of the reaction center D1 protein in plants (26, 53).
To our knowledge the product of the At5g01500 gene is the first chloroplast AAC identified and characterized at tissue, cellular, and molecular levels. The TAAC protein represents a link between ATP synthesis on the stromal side of the thylakoid membrane and nucleotide-dependent reactions in the lumenal space (10, 12, 13). Failure to detect a more substantial reduction of ATP transport and metabolism in the taac mutant suggests that the At5g01500 gene may encode a transporter that normally contributes only 3040% to the thylakoid transport. As an alternative, TAAC may quantitatively be a major player, and other yet unidentified transporters partially compensate for its disruption in the taac mutant.
Although further analyses are required to elucidate the physiological role of this carrier, it should be noted that other compounds resulting from nucleotide metabolism such as phosphate cannot be exported by TAAC, because it is not a substrate of this carrier, implying the presence of another transporter(s) responsible for its removal. The identification of these proteins should be the focus of further studies aimed at understanding the lumenal network of nucleotide metabolism.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental material including Figs. S1S4 and Table S1. ![]()
1 These authors equally contributed to this work. ![]()
2 Present address: Depts. of Biochemistry and Molecular Medicine, and Internal Medicine, University of California, School of Medicine, Davis, CA 95616. ![]()
3 To whom correspondence should be addressed. Tel.: 46-13-225788; Fax: 46-13-224314; E-mail: cornelia.spetea{at}ibk.liu.se.
4 The abbreviations used are: PS, photosystem; AAC, ADP/ATP carrier; CCCP, m-chlorocarbonyl cyanide phenylhydrazone; Chl, chlorophyll; GFP, green fluorescent protein; IPTG, isopropyl 1-thio-
,D-galactopyranoside; MCF, mitochondrial carrier family; NDPK, nucleoside diphosphate kinase; TAAC, thylakoid ATP/ADP carrier; bAAC, bovine AAC protein; TLC, thin layer chromatography; TMD, transmembrane domain; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine; WT, wild type. ![]()
| ACKNOWLEDGMENTS |
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