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J. Biol. Chem., Vol. 282, Issue 12, 9195-9203, March 23, 2007
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1
From the
Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, Germany, the ||Adolf-Butenandt-Institute, Ludwig-Maximilians-University, Schillerstrasse 44, D-80336 Munich, Germany, the ¶Center for Neuropathology and Prion Research, Ludwig-Maximilians-University, Feodor Lynen Strasse 23, D-81377 Munich, Germany, and the
Chair for BioMolecular Optics, Department of Physics, Ludwig-Maximilians-University, Oettingenstrasse 67, D-80538 Munich, Germany
Received for publication, August 16, 2006 , and in revised form, November 10, 2006.
| ABSTRACT |
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| INTRODUCTION |
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The pathogenic length of the polyQ stretch within the N-terminal segment of htt is
38Q or greater, and correlates with its ability to form detergent-insoluble fibrillar aggregates (4-6). N-terminal fragments containing the pathogenic polyQ stretch have been detected in inclusions in HD brain tissue, and their generation is considered to be a critical step in both fibril formation and toxicity (4, 7). Molecular dynamics simulations of polyQ fragments suggest that the core structure of a htt fibril is composed of peptides arranged in a triangular
-helical structure (8). Such fibrillar structures would grow by the attachment of further coils at the top and bottom ends of the
-helix.
Although inclusion bodies are closely associated with neurodegenerative disease, there has been considerable debate about the role of aggregates in pathogenesis. Increasing evidence suggests that inclusion bodies, and the fibrillar aggregates therein, may not represent the primary neurotoxic agent (1, 9-11). Instead, soluble intermediates in the aggregation pathway are likely to be the key toxic species, giving rise to neurodegeneration through various mechanisms including inactivation of essential transcription factors and inhibition of the ubiquitin proteasome system (12, 13). Much attention has therefore been focused on identifying means to disrupt or alter the polyQ aggregation pathway (14), and several compounds with anti-aggregation activity have been identified in vitro and in cell-based assays (15, 16).
We set out to develop a zebrafish HD model system suitable for whole organism validation of candidate compounds identified as aggregation inhibitors in vitro. The zebrafish has several key advantages over other in vivo models of HD. It is a vertebrate organism and contains homologues to many human genes, including the htt gene (17), making it a valuable tool to model human diseases such as HD. Additional important advantages include: the ease and cost efficiency with which in vivo drug tests can be performed; the transparency of zebrafish embryos allowing for visualization of morphological and physiological features in the live embryo; and the aqueous environment of the zebrafish, which facilitates drug administration (18). Importantly, the zebrafish model system allows for the evaluation of drug effectiveness in a whole organism, taking into account the stability and cellular targeting of the tested compound, as well as the assessment of potential side effects of the drug at active concentrations.
Here, we describe the characterization of a newly established zebrafish model of HD. Mutant htt expressed in zebrafish embryos accumulated in large SDS-insoluble inclusions, recapitulating a cardinal feature of HD pathology. Mutant htt also increased the frequency of embryos with abnormal morphology and dead embryos, as well as the occurrence of apoptosis. As in nonvertebrate polyQ disease models, the molecular chaperones, Hsp40 and Hsp70, suppressed both polyQ aggregation and toxicity. Using this zebrafish model, two anti-prion compounds of the N'-benzylidene-benzohydrazide class were identified as novel inhibitors of polyQ aggregation, suggesting that polyQ aggregates and prions may share common structural epitopes. We also address, for the first time in a vertebrate model system, the controversial question of whether inclusion bodies of polyQ-expanded htt directly contribute to toxicity. Our observation that the majority of apoptotic cells were devoid of visible inclusions suggests that polyQ toxicity is not primarily caused by insoluble aggregates but is more likely caused by soluble aggregation intermediates.
| EXPERIMENTAL PROCEDURES |
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Constructs and Embryo InjectionpCS2+Q25GFP and pCS2+Q102GFP were generated by subcloning the inserts from pYES2-htt(25 or 102Q)-GFP (21) into the AflII and XbaI sites of the pCS2+-AflII vector. PCR mutagenesis of pCS2+Q25GFP was used to generate a Q4GFP fragment, which was cloned into NdeI and BstAPI cut pCS2+Q25GFP backbone. To generate pCS2+Hsp70-YFP, an Hsp70-YFP fragment derived from pEYFP-N1-Hsp70 (22) was cloned into EcoRI, XbaI cut pCS2+. The construct used for transcription of human Hdj1 (Hsp40) was a kind gift from A. Haacke; the
-galactoside construct was purchased from Invitrogen. In vitro transcription of all of these constructs was performed with the MessageMachine Kit (Ambion, TX), and the resulting mRNA was injected at a concentration of 1 µg/µl into the yolk of embryos at the first or second cell stage. Co-injections were performed with 1 µg/µl polyQ-GFP mRNA and either 1 µg/µl
-Gal mRNA as a control or 0.5 µg/µl Hdj1 and 0.5 µg/µl Hsp70-YFP mRNA. The embryos were cultured at 28.5 °C in E3 (5 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2 0.33 mM MgSO4, and 0.1% methylene blue), the unfertilized eggs were removed, and the embryos were scored 24 h post-fertilization according to their appearance.
MicroscopyInjected zebrafish embryos were dechorionated, anesthetized with Tricaine (0.016% w/v), and orientated in 3% methyl cellulose on coverslips. Fluorescence was visualized with an LSM510 META inverted confocal microscope (Zeiss, Oberkochen, Germany). The images were captured digitally with a Zeiss MRM AxioCam camera and assembled in Photoshop 8.0 (Adobe Systems, Mountain View, CA). For nuclear staining, the embryos were immersed in 1:1000 dilution of TOPRO-3 stain (monomeric cyanine nucleic acid stain; Molecular Probes) for 30 min at room temperature and washed three times with E3. To assess apoptotic cell death, the embryos were additionally immersed in 3 µg/ml acridine orange (acridinium chloride hemi[zinc chloride]; Molecular Probes) for 15 min and washed three times with E3. For three-dimensional imaging, a stack of 10 frames was collected at intervals of 10-24 µm between adjacent slices, and the images were assembled to obtain a three-dimensional projection. To dissociate the GFP/acridine orange or GFP/YFP fluorescence signals, analysis was performed by emission fingerprinting in confocal lambda mode. A stack of two or three frames of the embryonic tail region 24 h post-fertilization was collected at intervals of 20 µm, and the number of acridine orange-stained cells was counted to estimate the amount of apoptotic cells. For the time lapse analysis of the living cells, zebrafish embryos 24 h post-fertilization were orientated in 1.2% low melting agarose (1.2% in E3 with Tricaine 0.09% w/v) and covered with E3. Images taken 24, 28, and 32 h post-fertilization were corrected for photobleaching effects, which reduced the signal
22.4% over the course of the experiment.
Cell Fractionation, Western Blot Analysis, and the Filter Trap AssayInjected embryos were resuspended in cold lysis buffer (0.5% Triton X-100, 0.5% sodium deoxycholate, and protease inhibitor mixture (Roche Applied Science) in phosphate-buffered saline) and lysed by passing through a 0.6-mm needle. After freezing and thawing the extracts, benzonase was added (75 units), and the extracts were incubated at 4 °C for 1 h with gentle agitation. The extracts were centrifuged at 2,000 x g for 3 min at 4 °C in the presence of glass beads to facilitate separation of the chorion debris. The supernatant was collected, and protein concentration was determined with a protein assay kit (Bio-Rad). For the detection of Hsp70-YFP (and Q102-GFP in Fig. 4b), the embryos were first dechorionated, and yolk was dissected, as previously described (23). For subcellular fractionation, the extracts were centrifuged at 100,000 x g for 30 min to obtain the supernatant and pellet fractions. The pellet was washed once with lysis buffer, centrifuged at 100,000 x g for 15 min, and either dissolved in SDS sample buffer or 100% formic acid. The latter was incubated for 3 h at 37°C with agitation, vacuum-dried, and resuspended in SDS sample buffer, as previously reported (24). The fractions were heated to 95 °C for 5 min and analyzed using SDS-PAGE and Western blotting (anti-GFP, anti-Hsp40, or anti-
-galactosidase), according to the standard procedure. For the filter trap assay, an equal volume of 4% SDS, 100 mM dithiothreitol was added to embryo extracts, and the mixture was heated for 5 min at 95 °C. Several dilutions of between 25 and 1000 µg were filtered through a cellulose acetate membrane (pore size, 0.2 µm), according to protocol (6). Aggregates retained on the filter were detected with an anti-GFP antibody. In all cases, the extracts were analyzed in parallel via SDS-PAGE and Western analysis to ensure equal expression levels among all conditions. For quantitating the results of Western blotting or the filter trap assay, an LAS-3000 imager (Fujifilm Image Reader) was used.
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Statistical AnalysesThe data were compared using Bonferroni's post hoc test and one-way analysis of variance (
-level was set to 0.05), as indicated.
Docking of Compounds to a Triangular PolyQ DimerUsing the program AutoDock Version 3.0 (25), we simulated the docking of models for the examined compounds (293G02, 306H03, 313B02, isoproterenol, mycophenolic acid, PGL-135, and Congo red) to a specific
-helical model for a polyQ proto-fibril. The structural model of a polyQ protofibril was adopted from the work of Stork et al. (8), who had suggested a left-handed triangular
-helix as the secondary structure motif for polyQ amyloid fibers. More specifically, a dimer of two
-helical polyQ peptides, each covering 36 residues, was selected. Five structural snapshots of the dimer solvated in water were taken at a temporal distance of 50 ps from the molecular dynamics trajectory, which served for equilibration of the modeled dimer structure with its aqueous environment at room temperature and ambient pressure in the quoted paper. The polyQ dimer snapshots were prepared for the AutoDock simulations using respective AutoDockTools, which assigned partial charges and solvation parameters to the atoms of the receptor peptides. Structural models for the ligand molecules were generated, and partial charges were assigned using the quantum chemistry program MNDO (26). Rotatable bonds within the ligands were defined through AutoDockTools. AutoDock applies an inter-polation scheme to evaluate the energy of a ligand in the vicinity of a receptor using grid maps that are precalculated over the receptor for each atom type in the ligand. We calculated the grid maps with 127 x 127 x 127 points and a grid spacing of 0.375 Å centered at the polyQ dimers using the AutoGrid tool within AutoDockTools. For each of the five polyQ dimer snapshots, we simulated the docking of the seven compounds using the Lamarckian Genetic Algorithm available in AutoDock. For each receptor-ligand pair, 100 separate dockings were performed and sorted by ascending free energy. The 20 docking structures of lowest free energy were visualized for each ligand using the software VMD (27).
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| RESULTS |
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95%) of the apoptotic cells were devoid of visible inclusions, which must be more than
0.5 µmin diameter for detection in our experimental setup. On the other hand, almost all cells containing detectable inclusions were nonapoptotic (
99%), suggesting that prefibrillar Q102-GFP may instead be the toxic agent (Fig. 3C, top panels). Indeed, apoptotic cells containing diffusely distributed Q102-GFP were detected (Fig. 3C, bottom panels). Thus, our results indicate that expression of polyQ-expanded htt is toxic to the zebrafish embryo, but toxicity is not associated with the presence of visible inclusions.
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41.8% of control; data not shown), apoptotic cells (
80% of control; data not shown), and dead embryos (Fig. 4D) while increasing the number of phenotypically normal embryos expressing Q102-GFP. Thus, aggregation and toxicity associated with Q102-GFP expression in zebrafish is partially suppressed by Hsp40 and Hsp70.
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Next, we set out to identify new compounds that inhibit polyQ aggregation. Considering the hypothesis that polyQ and PrPSc aggregates have similar amyloid core structures (8, 31), we tested three compounds (313B02, 293G02, and 306H03) that were previously identified in in vitro screens for inhibitors of prion propagation (32).4 All three of these compounds inhibited the aggregation of polyQ-expanded htt in vitro (Fig. 6A), indicating that these compounds interact directly with mutant htt to reduce its aggregation. However, only 293G02 and 306H03, both derivatives of N'-benzylidene-benzohydrazide (NBB), also inhibited the formation of detergent-insoluble aggregates of Q102-GFP in vivo (Fig. 6B). Interestingly, 306H03 was a more effective inhibitor of polyQ aggregation than 293G02 in vivo but not in vitro (Fig. 6).
To substantiate the effect of NBBs on polyQ aggregation, we set up a similar model of HD in mammalian neuroblastoma cells (N2a). In this system, expression of Q102-GFP, but not Q4-GFP or Q25-GFP, resulted in the formation of large, perinuclear inclusions containing SDS-insoluble aggregates; however, Q102-GFP was not overtly toxic to these cells under the tested conditions (supplemental Fig. S2). Concordant with the results from the zebrafish system, NBBs proved efficient in suppressing Q102-GFP aggregation in N2a cells (supplemental Fig. S2). Taken together, these data suggest that NBBs represent a new class of compounds that effectively inhibit polyQ aggregation. Notably, none of the studied compounds suppressed the abnormal morphology and death associated with Q102-GFP expression in zebrafish embryos (data not shown). Thus, the NBBs may interfere with the formation of large SDS-resistant polyQ aggregates downstream of the accumulation of toxic polyQ species.
To gain insight into the effects of the anti-prion compounds on polyQ aggregation, we simulated their docking to a structural model for a polyQ protofibril (8). The simulations predict large binding free energies in a narrow range between 4.8 and 7.2 kcal/mol (supplemental Table S1), indicating thermally stable dockings for all of the investigated compounds. As exemplified in Fig. 7 for the four molecules with largest binding free energies, all of the compounds were found to preferentially bind to the two ends of the polyQ helices. Well defined docking positions are predicted for the two NBB compounds (293G02 and 306H03), both of which exhibit an amide group perfectly suited for hydrogen-bonded attachment to the polyQ peptide backbone. The docking positions of Congo red and 313B02, however, show a larger disorder. All of the compounds additionally exhibit a variety of further binding interactions with the peptides. In conclusion, our simulations using a polyQ model predict that NBBs specifically bind to the ends of the polyQ helices, a mechanism that would prevent fibril growth. Indeed, other structural models for polyQ protofibrils exist (33), but all are characterized by dangling H-bond attachment sites (i.e. backbone C=O and N-H groups) at the unsaturated ends of
-sheet fibril, which could mediate NBB interaction.
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| DISCUSSION |
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The newly established zebrafish model proved useful in evaluating the effectiveness of compounds in inhibiting polyQ aggregation and toxicity in the context of a whole vertebrate organism. Drug absorption into the zebrafish embryo is likely facilitated by its aqueous environment and lack of blood brain barrier at early stages in development; therefore, compounds could be tested for their effect on polyQ aggregation while minimizing complicating factors that impede absorption. The unique feature that drug testing can be performed within 2 days made this model a cost- and time-efficient alternative to existing mouse models of HD. The ability to differentiate between the effects on polyQ-mediated aggregation verses toxicity is another advantage of the zebrafish system, which is lacking in several other HD models, such as the N2a cell culture model tested in this study (supplemental Fig. S2). The zebrafish model also takes into account the stability and the cellular targeting of compounds in an organism. For example, one of the tested compounds, 313B02, was effective in inhibiting polyQ aggregation in vitro but was not effective as an aggregation inhibitor in vivo (Fig. 6), suggesting that this compound is not stable and/or not targeted efficiently in the zebrafish. Using zebrafish, we were also able to evaluate whether a compound caused side effects when present at active concentrations in a whole organism. For instance, mycophenolic acid, a compound known to suppress htt inclusion formation in cell culture, caused pronounced apoptosis in the brain region of the zebrafish embryo at these doses (data not shown) and had no effect on polyQ aggregation at the maximum tolerated dose (Fig. 6B).
We used the newly established zebrafish model to identify NBBs as effective inhibitors of polyQ aggregation. Two of the analyzed anti-prion compounds, 313B02 and 293G02, were previously identified as inhibitors of the recruitment of prion monomers into PrPSc aggregates (32), whereas compound 306H03 has since been discovered in a similar screen.4 PrPSc and mutant htt are neurodegenerative disease proteins that accumulate in structurally similar fibrillar aggregates that may have a common
-helical amyloid core structure (8, 31). We therefore hypothesized that inhibitors of the aggregation of PrPSc may also be effective in preventing polyQ protein aggregation. Our observation that anti-prion compounds are indeed potent inhibitors of polyQ aggregation suggests that polyQ aggregates and prions share common structural epitopes. Similar results obtained from an N2a neuroblastoma cell culture model of HD (supplemental Fig. S2) confirmed our results from zebrafish and further established the zebrafish system as a valid model to study human disease. Taken together, these findings reinforce the view that common mechanisms underlie the pathogenesis of diverse neurodegenerative diseases and suggest that common therapeutic targets may exist.
Based on our results, NBBs may constitute a new class of compounds with "generic" anti-aggregation activity, perhaps preventing the misfolding and aggregation of a wide variety of neurodegenerative disease proteins. NBBs provide a novel and promising lead structure for the development of new therapeutics in several regards. The NBBs used in this study satisfy Lipinski's "rule of five" for drug-likeness by having fewer than five H-bond donors, 10 H-bond acceptors, a molecular weight smaller than 500, and a calculated Log P smaller than 5, which would predict efficient absorption or permeation (37). Importantly, our data indicate that in a vertebrate organism, NBBs can reach the cytoplasm in active concentrations without causing overt toxic side effects up to the limits of their solubility in water. Furthermore, our analyses indicate that the hydroxyl groups of the NBB compounds, which were shown to be crucial for anti-prion activity in vitro (32), are not essential for inhibition of polyQ aggregation in vivo. Actually, 293G02, although exhibiting the highest potency in vitro, was a less effective inhibitor of polyQ aggregation than 306H03 in vivo (Fig. 6 and supplemental Fig. S2). Most likely, the presence of a chloride group, rather than hydroxyl groups, enhances cell permeability by decreasing the total polar surface area from 81.92 Å2 (293G02) to 41.46 Å2 (306H03) and increasing the hydro-phobicity calculated Log P from 2.94 (293G02) to 4.67 (306H03). Thus, NBBs such as 306H03 may be developed that are more likely to cross the blood-brain barrier efficiently. Presumably, the disease-modifying therapeutic effect of aggregation inhibitors in protein aggregation diseases also depends on the nature of the toxic species and whether toxicity occurs primarily through a loss-of-function or gain-of-function mechanism. New classes of drugs that interfere with aggregate formation at the molecular level such as the NBBs may provide valuable tools to further dissect the molecular steps involved in disease pathogenesis in vivo.
The zebrafish model has also allowed us to investigate the question of whether inclusions of polyQ-expanded htt contribute directly to toxicity in a vertebrate organism. Our observation that the majority of apoptotic cells were devoid of visible inclusions suggests that polyQ toxicity is not primarily caused by detectable inclusions, in line with previous findings in cell culture (11, 12). Smaller inclusions/aggregates with a diameter of less than
0.5 µm, which would escape detection using our experimental setup, are therefore implicated in causing toxicity in our system. This may explain why NBBs could suppress the formation of SDS-insoluble aggregates without detectably suppressing polyQ toxicity (Fig. 6 and data not shown). We suspect that NBBs effectively inhibit primarily later stages of Q102-GFP aggregation. Thus, early soluble intermediates in the htt aggregation pathway associated with toxicity may still accumulate. Future studies aimed at assaying structural derivatives of NBBs may lead to the identification of more effective suppressors of polyQ toxicity.
Large scale screens will continue to identify promising compounds that inhibit aggregation processes in vitro or in cell culture. A systematic approach for validating such candidate compounds should include the judicious use of vertebrate model systems to evaluate efficacy against polyQ aggregation and toxicity before proceeding to clinical trials. Cost- and time-efficient drug testing using the zebrafish model described here is likely to prove useful for this purpose.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental Figs. S1 and S2, Table S1, and Video S1. ![]()
1 To whom correspondence may be addressed. Tel.: 49-89-8578-2233; Fax: 49-89-8578-2211; E-mail: uhartl{at}biochem.mpg.de.
2 To whom correspondence may be addressed. Tel.: 49-89-2180-75453; E-mail: Bettina.Schmid{at}med.uni-muenchen.de.
3 The abbreviations used are: polyQ, polyglutamine; HD, Huntington disease; NBB, N'-benzylidene-benzohydrazide; htt, huntingtin; GFP, green fluorescent protein; YFP, yellow fluorescent protein; HA, hemagglutinin. ![]()
4 A. Giese, personal communication. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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