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J. Biol. Chem., Vol. 282, Issue 15, 10873-10880, April 13, 2007
Hypoxia-inducible Factor 1
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| ABSTRACT |
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-Amyloid peptide (A
), which is derived from the
-amyloid precursor protein (APP) by sequential proteolytic cleavages from
-secretase (BACE1) and presenilin-1 (PS1)/
-secretase, is widely believed to trigger a cascade of pathological events culminating in AD and vascular dementia. However, a direct molecular link between hypoxic insults and APP processing has yet to be established. Here, we demonstrate that acute hypoxia increases the expression and the enzymatic activity of BACE1 by up-regulating the level of BACE1 mRNA, resulting in increases in the APP C-terminal fragment-
(
CTF) and A
. Hypoxia has no effect on the level of PS1, APP, and tumor necrosis factor-
-converting enzyme (TACE, an enzyme known to cleave APP at the
-secretase cleavage site). Sequence analysis, mutagenesis, and gel shift studies revealed binding of HIF-1 to the BACE1 promoter. Overexpression of HIF-1
increases BACE1 mRNA and protein level, whereas down-regulation of HIF-1
reduced the level of BACE1. Hypoxic treatment fails to further potentiate the stimulatory effect of HIF-1
overexpression on BACE1 expression, suggesting that hypoxic induction of BACE1 expression is primarily mediated by HIF-1
. Finally, we observed significant reduction in BACE1 protein levels in the hippocampus and the cortex of HIF-1
conditional knock-out mice. Our results demonstrate an important role for hypoxia/HIF-1
in modulating the amyloidogenic processing of APP and provide a molecular mechanism for increased incidence of AD following cerebral ischemic and stroke injuries. | INTRODUCTION |
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-amyloid (A
) derived from
-amyloid precursor protein (APP). APP is sequentially cleaved first by the
-secretase (
-site amyloid precursor protein cleaving enzyme, BACE) and then by the
-secretase complex (including presenilin, nicastrin, APH-1, and PEN-2) to generate the heterogeneous A
species, mostly A
40 but also the more deleterious A
42. Alternatively, APP can be cleaved by
-secretase within the A
domain to generate non-amyloidogenic soluble APP
(sAPP
) (13). The exact
-secretase is not known, but a disintegrin and metalloprotease domain 10 (ADAM10) and TNF-
-converting enzyme (TACE) are two likely candidates (4, 5). It is widely believed that A
overproduction directly or indirectly initiates a cascade of neurodegenerative steps resulting in formation of senile plaques, neurofibrillary tangles, and neuronal loss, which characterize AD (6). Hence analysis of cellular regulation affecting A
generation, including identification of factors regulating the level/activity of APP cleavage enzymes, should provide invaluable information for AD therapeutic intervention.
BACE is a membrane-bound aspartic protease whose activity is the rate-limiting step in A
production from APP. Among two BACE homologs, BACE1 and BACE2, BACE1 is the major protease for
-cleavage of APP (712). Mice deficient in BACE1 are viable and show an almost total loss of A
(1315). These findings, together with other biochemical studies, indicate that BACE1 is an ideal therapeutic target for blocking A
production. However, identification of small molecules specifically targeting BACE1 and not other aspartic proteases has been challenging. In addition, delivering inhibitory small molecules across the cell membrane and blood-brain barrier poses another difficulty. Recently, the BACE1 promoter was defined, and several transcription factors regulating BACE1 expression identified, including SP1 (16), PPAR
(17), and Yin Yang 1 (YY1) (18). Interestingly, protein levels of BACE1 and some of these transcription factors have been found altered in AD brain regions containing A
plaques, suggesting that increased BACE1 expression resulting from altered levels of its transcriptional activators may contribute in part to AD pathogenesis (1720).
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and HIF-1
. HIF-1
levels are low under physiological conditions but increase dramatically under hypoxia. HIF-1
binds to HIF-1
to form functional HIF-1 heterodimers, consequently regulating a series of transcriptional events (21). HIF-1
is essential for adaptation to low oxygen levels, and a complete deficiency in HIF-1
leads to embryonic lethality (22). Cerebral ischemia results from an insufficient oxygen supply to the brain and causes neuronal damage in vulnerable brain areas (23). Accumulating evidence indicates that cerebral ischemia/stroke significantly increases AD risk (2426). Moreover, APP expression is elevated in post-ischemic brain, and cleavage of APP leading to amyloidogenic A
peptides may hence be increased by ischemia (2729). Although it is likely that cellular stresses such as ischemia or hypoxia facilitate or worsen the pathogenesis of AD, molecular links between these conditions have yet to be established. We recently characterized the promoter of the APH-1a gene, which encodes a key component of the PS1/
-secretase complex, and identified a functional HIF-1 binding element. We further demonstrated that activation of HIF-1 by short-term hypoxia increases expression of APH-1a mRNA and protein, leading to increased
-cleavage of APP and the Notch receptor (30). Sequence analysis of the mouse BACE1 promoter revealed a putative HIF-1 binding element, although there are no reports of regulation of BACE1 mRNA expression by HIF-1 or hypoxia. Given that BACE1 cleavage of APP is a prerequisite for
-cleavage and thus widely viewed as the key regulatory step in inhibiting A
production, we investigated the effects of acute hypoxia (up to 8 h) and HIF-1 on BACE1 expression. | EXPERIMENTAL PROCEDURES |
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cDNA or pcDNA (as control) using FuGENE 6 (Roche Applied Science, Indianapolis, IN), following the manufacturer's instructions. Cells were harvested 48 h after transfection. For hypoxic treatment, N2a-APP cells were incubated in a 37 °C chamber containing 1% O2 and 5% CO2 for 2, 4, and 8 h.
Immunoblotting and AntibodiesTreated cells were lysed in RIPA (150 mM sodium chloride, 50 mM Tris-HCl, pH 7.4, 1% Triton X-100, 1% sodium deoxycholate, 0.1% sodium dodecyl sulfate, supplemented with a protease inhibitor mixture). Equal amounts of lysates were analyzed and immunoblotted as indicated. Mouse anti-HIF-1
antibody was from Novus Biologicals (Littleton, CO). Rabbit anti-BACE1 antibody B690, rabbit antibody 369 against the APP C terminus, and rabbit antibody Ab14 against the PS1 N terminus were developed in our laboratory (3134). Rabbit anti-TACE antibody was from Santa Cruz Biotechnology (Santa Cruz, CA). Mouse anti-
-tubulin antibody was from Sigma. Monoclonal antibodies 6E10 and 4G8 (Signet Laboratories, Dedham, MA) that recognize amino acids 117 and 1724 of human A
peptide, respectively, were used to detect A
and APP
CTFs.
A
ELISA AssayConditioned media from hypoxia-treated and untreated cells were collected. The concentrations of A
40 and A
42 were quantified using commercial ELISA kits (Invitrogen, Carlsbad, CA), following the manufacturer's protocols.
In Vitro
-Secretase Activity AssayLysates of hypoxia-treated or untreated cells were assayed for
-secretase activity using a kit from Calbiochem (San Diego, CA), following the manufacturer's protocol.
Pulse-Chase ExperimentsTo assay the kinetics of BACE1 metabolism, 4-h hypoxia-treated and untreated N2a-APP cells were labeled with [35S]methionine (500 µCi/ml) for 5 or 10 min at 37 °C and collected for analysis. In some experiments, N2a-APP cells were pretreated for 4 h with hypoxia and then subjected to 15 min of pulse-labeling followed by chase for 15, 30, 60, and 120 min under hypoxic conditions. Cell lysates were immunoprecipitated with anti-BACE1 antibody B690, followed by SDS-PAGE analysis and autoradiography. Data were quantified using Scion Image (Scion Corp., Frederick, MD). The level of labeled BACE1 after 5 min of labeling of untreated cells was defined as one arbitrary unit.
Quantitative Real-time Polymerase Chain Reaction (RT-PCR)Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA). SuperScript First-Strand kit (Invitrogen) was used to synthesize first strand cDNA from samples with an equal amount of RNA, according to the manufacturer's instruction. Synthesized cDNAs were amplified using IQTM SYBR green supermix and ICycler from Bio-Rad; data were analyzed using Bio-Rad MyIQ 2.0. Primers used for BACE1 amplification were: BACE15, 5'-GATGGTGGACAACCTGAG-3' and BACE13, 5'-CTGGTAGTAGCGATGCAG-3'. Primers used for
-actin amplification were: actin-5, 5'-AGCCATGTACGTAGCCATCC-3' and actin-3, 5'-CTCTCAGCTGTGGTGGTGAA-3'. BACE1 mRNA levels were normalized to levels of
-actin. Three independent experiments were performed, and statistical analysis was carried out using the Student's t test.
Construction of Luciferase Reporter Plasmids, Site-directed Mutagenesis, and Electrophoretic Mobility Shift Assay (EMSA)PCR was performed to amplify a 5'-flanking region of the BACE1 gene by using genomic DNA from mouse N2a cells as template. Primers used were BACE primer5, 5'-GGCTGGCATGCATGACAGGGTGCGCACGGGGGTGTG-3' and BACE primer3, 5'-CAGCACCTAGGCAGGCTGGGGAGGCGGAAAGGCTTG-3'. The mutBACE primer5, 5'-GGCTGGCATGCATGACAGGGTGCGTCACGGGGTGTG-3', was paired with BACE primer3 for PCR amplification to introduce mutations (boldface and underlined) into the potential HIF-1 binding site. After amplification, PCR products were inserted into the pCR2.1-TOPO vector (Invitrogen) for sequencing. After cleavage of the vectors with KpnI and XhoI, released fragments were introduced into the pGL3-enhancer vector containing the firefly luciferase gene (Promega, Madison, WI). Firefly luciferase vectors were co-transfected with phRL-SV40 containing the Renilla luciferase gene (Promega) into N2a cells, and the cells were treated with or without hypoxia for 4 h. Firefly luciferase activities were assayed and normalized to those of Renilla luciferase.
EMSA was performed as previously described (30, 35). Briefly, nuclear extracts from N2a-APP cells treated under hypoxia for 4 h were prepared using a nuclear extract kit (Activemotif, Carlsbad, CA). Oligonucleotides were synthesized and annealed with their respective reverse complements to generate the following double-stranded oligonucleotides: wild-type BACE1 HIF-1 containing the potential HIF-1 binding site in the mouse BACE1 promoter (5'-CAGGGTGCGCACGGGGGTGTGGG-3'); mutant BACE1 HIF-1 with an CACG
TCAC mutation (boldface and underlined) (5'-CAGGGTGCGTCACGGGGTGTGGG-3'); and a HIF-1 consensus probe (5'-ACCGGCCCTACGTGCTGTCTCAC-3') (37). The SP1 consensus probe was provided in the Gel Shift Assay Core System (Promega). Wild-type BACE1 HIF-1 and putative HIF-1 probes were labeled with [
-32P]ATP and incubated with N2a nuclear extracts with or without unlabeled BACE1 HIF-1 competitor (wild type or mutant form). Samples were analyzed by non-denaturing PAGE and autoradiography.
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RNA InterferenceThe mouse HIF-1
siRNA sequence used was 5'-AAGCAUUUCUCUCAUUUCCUCAUGG-3' (38). The control siRNA sequence was from Invitrogen. siRNA was transfected into cells using Lipofectamine RNAiMAX reagent (Invitrogen), following the manufacturer's protocol.
Tissue Isolation from HIF-1
Conditional Knock-out MiceThe hippocampus and cortex were dissected from HIF-1
conditional knock-out mice (in which Cre is driven by the calcium/calmodulin-dependent kinase CaMKII
promoter) and littermates at 2 months of age (39). Samples were either lysed in RIPA for immunoblotting or used for RNA extraction and quantitative RT-PCR.
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| RESULTS |
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generation, we treated mouse neuroblastoma N2a cells stably expressing human APP695 with hypoxic conditions (1% O2) for 2, 4, and 8 h. As shown in Fig. 1A, hypoxia significantly increased the protein level of BACE1, accompanied by a concomitant increase in HIF-1
protein levels, as expected. The levels of TACE, the N terminus of PS1 (PS1-NTF) and full-length APP were not affected by hypoxic treatment. A modest but significant increase in total BACE1 activity was observed, reflecting increased cellular protein levels (Fig. 1B). Consistent with our previous observation (30), hypoxic treatment led to a marked increase in overall levels of secreted A
(both A
40 and A
42) (Fig. 1, C and D). While we previously observed a modest decrease in the total APP CTFs in HeLa cells by chemical hypoxia, the current study showed a slight increase in APP
CTF, an immediate cleavage product of BACE1, by low oxygen hypoxic treatments in N2a cells (Fig. 1C). The increased steady state level of BACE1 may result from increased biogenesis, decreased degradation, or both. To determine at which step(s) hypoxia affects BACE1 expression, we undertook pulsechase experiments. Cells pretreated with hypoxia were pulse-labeled with [35S]methionine for 5 or 10 min without chase, or 15 min followed by chase periods up to 120 min under hypoxia. Biosynthesis of nascent BACE1 was significantly higher in cells treated with hypoxia than in untreated cells, whereas turnover curves for both hypoxia-treated and untreated cells were similar, suggesting that hypoxia mainly affects biosynthesis rather than degradation of BACE1 protein (Fig. 2A). Quantitative real-time PCR analysis showed 1.52-fold increases in BACE1 mRNA following hypoxic treatment, confirming the effect of hypoxia on BACE1 transcription (Fig. 2B).
Identification of a Functional HIF-1
Binding Element in the BACE1 PromoterGiven that HIF-1 is a critical transcription factor activated in response to hypoxic stresses, we looked for a potential HIF-1 binding element in the BACE1 promoter region and asked whether binding by HIF-1 could be responsible for up-regulation of BACE1 transcription under hypoxic conditions. Indeed, sequence analysis of the 5'-flanking sequence of the mouse BACE1 gene revealed a potential HIF-1 binding site on the minus strand at 835 to 821 (acgcGTGCccccaca) upstream of the BACE1 start ATG (defined as +1) (Fig. 3A). To determine whether this site was important for promoter activity, we constructed luciferase reporter vectors containing this region or a mutant form that lacks HIF-1 binding ability and transfected both constructs into N2a-APP cells. As expected, the promoter activity of this BACE1 promoter region was significantly higher in cells treated under hypoxia than in untreated cells (Fig. 3B). Moreover, mutation of the putative HIF-1 binding site resulted in a significant reduction in promoter activity in untreated cells and hypoxia did not significantly potentiate the promoter activity of this mutant (Fig. 3B). These results indicate the functionality of this HIF-1 site. To further investigate the interaction between this HIF-1 binding site and HIF-1 protein, we performed gel shift analysis. Such an analysis revealed a DNA-protein complex forming after incubation of this probe with nuclear extracts of N2a-APP cells treated under hypoxia for 4 h (Fig. 3C, lane 2). This complex migrated at the same position as a HIF-1 consensus probe-protein complex (positive control, Fig. 3C, lane 1). Formation of the BACE1 HIF-1 probe-protein complex was abolished by competitive binding of unlabeled HIF-1 consensus probe and BACE1 HIF-1 probe (Fig. 3C, lanes 3 and 4) but was not affected in the presence of unlabeled BACE1 HIF-1 mutant probe (Fig. 3C, lane 5) or SP1 probe (Fig. 3C, lane 6). These data support the idea that the identified BACE1 HIF-1 binding element can form a complex with nuclear HIF-1 protein.
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Regulates the Level of BACE1To determine whether HIF-1
overexpression mediates effects on BACE1 expression similar to those of hypoxia, we transfected N2a-APP cells with various doses (0, 0.5, 1, 2, 5, and 10 µg; only 0, 2, and 5 µg were shown here) of HIF-1
cDNA. Following HIF-1
overexpression we observed a maximum of an
2.5-fold increase in BACE1 protein level at 2 µg of HIF-1
DNA. We also observed a 2-fold increase in BACE1 mRNA level, along with minimal changes in levels of PS1 NTF or TACE (Fig. 4, A and B). The observation that a higher dose (5 µg) of HIF-1
expression failed to further up-regulate BACE1 expression suggests that the regulatory effect of HIF-1 on BACE1 expression is saturable.
On the other hand, we tested whether down-regulating HIF-1
could reduce the level of BACE1. As shown in Fig. 4C, when the level of HIF-1
was down-regulated (by
80%) by siRNA treatment, the level of BACE1 was also reduced in both hypoxia-treated and untreated cells. However, hypoxic treatment still stimulated, but to a much lesser extent, BACE1 expression in HIF-1
-down-regulated cells (lane 3 versus lane 4), compared with that in control siRNA-transfected cells (lane 1 versus lane 2); and this could be attributed to the incomplete knock-out of HIF-1
. This result indicates a direct involvement of HIF-1
in hypoxia-mediated BACE1 up-regulation.
The Hypoxic Effect Is Mediated Mainly by HIF-1To determine whether effects of HIF-1
overexpression and hypoxia on BACE1 expression are additive, we treated HIF-1
overexpressing N2a cells with hypoxic conditions for various time periods. As shown in Fig. 5, while cellular HIF-1
levels were further elevated by hypoxia, the levels of BACE1 mRNA did not increase. Similarly, combining hypoxic treatment with overexpression of HIF-1
did not further increase A
levels (Fig. 5A). Together with the siRNA knockdown data shown in Fig. 4C, these results strongly suggest that the hypoxic effect of BACE1 expression and A
generation are largely mediated by HIF-1.
BACE1 Protein Levels Are Reduced in Brains of HIF-1
Conditional Knock-out MiceBecause BACE1 activity is higher in neuronal than in non-neuronal tissues, and neuronal A
in particular is thought to be the major contributor to AD pathogenesis, we analyzed the patho-/physiological relevance of HIF-mediated BACE1 expression using a mouse model of neuron-specific HIF-1
deficiency (39). A total deficiency of HIF-1
mRNA in isolated tissues was confirmed by RT-PCR (data not shown). We then examined and compared BACE1 protein levels in total brain lysates of conditional knock-out mice with those from lysates from littermate controls and observed no significant differences in BACE1 total protein (data not shown). We then dissected the hippocampus and the cortex, two brain regions most affected in AD, from conditional knock-out and littermate control mice and found that HIF-1
deficiency led to a marked reduction in BACE1 protein levels in these two brain regions, suggesting an important role for HIF-1 in regulating BACE1 expression (Fig. 6).
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| DISCUSSION |
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-secretase activity and is the major protease catalyzing
-cleavage of APP (712). Several studies indicate that protein levels and BACE1 activity are elevated in brain regions affected by AD, suggesting that abnormal BACE1 activity contributes significantly to AD pathogenesis (19, 20). Ischemia or stroke gives rise to hypoxic conditions known to greatly increase the incidence of AD (2426). These observations indicate a potential link between hypoxia-activated signaling pathways triggering HIF-1 induction and activation of the A
generation machinery, which requires up-regulation of BACE1 level/activity.
Although several studies have addressed the effects of ischemia or hypoxia on enzymes involved in APP processing/A
production, the results have been contradictory. Wen et al. (40) found that both activity and expression of BACE1 were significantly increased in rats under transient cerebral ischemia. Another study, however, using AD transgenic mice overexpressing mutant APP showed that neither expression nor activity of BACE was significantly affected by ischemic insult; instead ADAM10 was markedly increased in the early stage of ischemic insult and then down-regulated at later stages (41). Other studies report a drastic decrease in ADAM10 and TACE protein levels with unchanged BACE1 levels in human neuroblastoma SH-SY5Y cells subjected to chronic hypoxic treatments (4244). While it is hard to reconcile these results, differing experimental procedures, such as cells/tissues examined, culture conditions, the percentage of O2 utilized, or duration of hypoxic treatment, could all contribute to discrepant results. In fact, we observed that effects of hypoxia and/or elevated levels of HIF-1
on BACE1 expression and A
generation were gradually reduced when cells were exposed to prolonged periods of hypoxic stress or when high levels of HIF-1
expression were sustained (data not shown); both outcomes could be due to the cellular ability to adapt to deleterious conditions. Cellular adaptation to a non-physiological condition such as HIF-1
deficiency is also manifested by the fact that non-neuronal cells and/or cells of brain regions other than the forebrain can compensate for decreases in BACE1 expression.5 Our study provides the first evidence for a link between ischemia/hypoxia and APP processing/A
production at the molecular level, which is defined mechanistically by transcriptional regulation of BACE1 by HIF-1. In addition, our observation of reduced BACE1 expression in the hippocampus and cortex of HIF-1
-deficient mice further emphasizes the patho-physiological relevance of regulation of BACE1 expression and activity by hypoxia/HIF-1 pathways.
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was reduced because of an altered BACE1 subcellular localization and hence a shift on APP cleavage, modest increase of BACE1 level indeed promoted A
deposition (45). In addition, more and more reports have shown that increased endogenous BACE1 levels in cell and animal models and more significantly in AD brains result in an increased amyloidogenic cleavage of APP and may contribute directly to (sporadic) AD pathogenesis (19, 46, 47). Consistent with this, our study also showed that A
generation (both A
40 and A
42) was increased accompanied by an increased endogenous BACE1 level upon hypoxia treatment (Fig. 1). The greater increase of A
detected by ELISA (2-fold) than that by the IP-Western method (1.5-fold) reflects the more sensitive and quantitative feature of the ELISA technique which detects more A
variants than the IP-Western method. These results suggest that the generation of A
is positively correlated with an increase of BACE1 within the patho/physiological range.
Inhibiting BACE1 activity or reducing levels of BACE1 in vivo has been shown to decrease production of A
without severe detrimental phenotypes (1315), suggesting that BACE1 is a valuable candidate for therapeutic targeting. However, given the difficulty of developing specific small-molecule inhibitors, it is critical to explore alternative approaches such as down-regulating BACE1 transcription, particularly in cases of ischemia and stroke in which elevated BACE1 expression/activity may contribute to a higher incidence of AD.
| FOOTNOTES |
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generation.
* This work was supported in part by National Institutes of Health Grants R01 AG030197, R01 NS046673, and R01 AG021173 (to H. X.) and R01 NS054880 (to F. F. L.), and grants from the Alzheimer Association (to H. X.), the American Health Assistance Foundation (to H. X.), and the National Natural Science Foundation of China (No. 30672198, to Y.-w. Z.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
1 These authors contributed equally to this study and share first authorship. ![]()
3 Recipient of National Institutes of Health Training Grant F32 AG024895. To whom correspondence may be addressed: Burnham Institute for Medical Research, La Jolla, CA 92037. Tel.: 858-795-5246; Fax: 858-795-5273; E-mail: yunzhang{at}burnham.org. ![]()
2 To whom correspondence may be addressed: Burnham Institute for Medical Research, La Jolla, CA 92037. Tel.: 858-795-5246; Fax: 858-795-5273; E-mail: xuh{at}burnham.org.
4 The abbreviations used are: AD, Alzheimer disease; ADAM10, a disintegrin and metalloprotease domain 10; APH-1, anterior pharynx-defective-1; APP,
-amyloid precursor protein; A
,
-amyloids; BACE, beta-site APP cleaving enzyme; CTF, C-terminal fragment; EMSA, electrophoretic mobility shift assay; HIF-1, hypoxia-inducible factor-1; NTF, N-terminal fragment; N2a-APP, N2a cells stably expressing human APP695; PEN-2, presenilin enhancer-2; PS, presenilin; RT-PCR, real-time polymerase chain reaction; siRNA, small interfering RNA; TACE, tumor necrosis factor-
-converting enzyme; ELISA, enzyme-linked immunosorbent assay; RIPA, radioimmune precipitation assay buffer. ![]()
5 X. Zhang, K. Zhou, R. Wang, J. Cui, S. A. Lipton, F. F. Liao, H. Xu, and Y.-W. Zhang, unpublished observations. ![]()
| ACKNOWLEDGMENTS |
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