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J. Biol. Chem., Vol. 282, Issue 2, 1003-1009, January 12, 2007
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From the Critical Care Medicine Department, Clinical Center, National Institutes of Health, Bethesda, Maryland 20892
Received for publication, August 9, 2006 , and in revised form, November 8, 2006.
| ABSTRACT |
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| INTRODUCTION |
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Nitric oxide (NO·) regulates a wide range of cellular activities including gene expression (1216), cell proliferation (17, 18), and apoptosis (19) that are closely linked to its anti-tumor and anti-atherosclerotic properties (17, 20). Using a microarray-based approach in soluble guanylate cyclase-deficient cells, we recently demonstrated that NO· predominately regulated a large set of cell cycle genes independent cGMP (15). NO· induced both E2F1 and p21/Waf1, master regulatory genes in the cell cycle, triggering a highly coordinated genetic program that altered the G1/S transition and led to cellular arrest in G2/M. NO· activation of p38 MAPK was found to up-regulate p21/Waf1 by stabilizing its mRNA (15). Downstream of these events, p21/Waf1 is known to exert broad effects on the cell cycle by inhibiting cyclin/cyclin-dependent kinase (CDK) complexes and altering the activity of a number of transcription factors and cofactors, such as E2F, c-Myc, STAT3, and C/EBP-
(15, 21). In contrast to E2F1 and p21/Waf1 induction, NO· down-regulated a large group of G2/M phase cell cycle genes (15). A high proportion of these later genes including PLK1 have CDE/CHR (cell cycle-dependent element/cell cycle gene homology region) sites in their proximal promoters (9, 10).
Like NO·, p21/Waf1 expression can induce cell cycle arrest in early G2/M (22). At least in part, p21/Waf1 triggers cell arrest by repressing highly synchronized target genes that collectively contain CDE/CHR promoter sites (9, 10, 2327). Whether or not NO· activation of p38 MAPK with subsequent stabilization of p21/Waf1 mRNA fully explains NO· repression of CDE/CHR-regulated genes is not known. Cell cycle arrest at the G2 checkpoint caused by p38 MAPK has been attributed to a mechanism that is only partially p21/Waf1 dependent (28). Furthermore, a number of cell cycle genes with CDE/CHR promoter sites, such as c-Myb, cyclin A1, cyclin B1, and CENP-A (centromere protein A) (9, 10) also have 3'-untranslated region sequences that suggest the potential for NO·-mediated post-transcriptional regulation (15).
In the present study, we investigate the roles of p38 MAPK and p21/Waf1 in the regulation of PLK1 by NO·. Using phorbol 12-myristate 13-acetate (PMA)-differentiated U937 cells, we first determined the effects of NO· on the expression of PLK1 and p21/Waf1 at both the mRNA and protein levels. Nuclear run-on and mRNA stability studies were then employed to demonstrate the effects of NO· on PLK1 gene transcription and mRNA stabilization. Promoter analysis and electrophoretic mobility shift assays (EMSA) were further used to identify NO·-responsive elements in the proximal PLK1 promoter. Finally, p38 MAPK blockade using a dominant-negative mutant of p38 MAPK and p21/Waf1 knockdown with siRNA were applied to determine whether NO· effects on PLK1 required either p38 MAPK or p21/Waf1 for functional signal transduction.
| EXPERIMENTAL PROCEDURES |
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U937 cells (ATCC, Rockville, MD), a human monoblastoid line, were cultivated at 37 °C in a 5% CO2 atmosphere using RPMI 1640 (BioWhittaker, Walkersville, MD), supplemented with 10% fetal bovine serum (BioSource International, Rockville, MD), and 1% antimicrobial solution (Cellgro, Herndon, VA). Cells were differentiated with PMA (100 nM) for 16 h, washed twice, and resuspended in fresh media for experiments.
Quantitative Real-time PCR (qRT-PCR) and Western BlottingTotal RNA was isolated from PMA-differentiated U937 cells using RNeasy mini kits (Qiagen Inc., Valencia, CA). Transcript levels were measured using TaqMan® (Applied Biosystems, Rockville, MD), as described previously (15). Primers and probes for qRT-PCR were purchased from Applied Biosystems. Target gene mRNA levels were normalized to the housekeeping gene GAPDH. To measure protein expression levels for p21/Waf1 and PLK1, 30 µg of whole cell lysate was extracted from cells under various conditions as indicated and used for Western blotting following procedures described previously (14). The housekeeping gene
-tubulin was measured at the same time to control for protein loading.
Nuclear Run-on AssaysPMA-differentiated U937 cells were incubated with GSH (400 µM; control) or the NO· donor GSNO (400 µM) for 6 h in the absence or presence of 0.1 µM SB202190, a specific p38 MAPK inhibitor. Nuclei were then isolated with nuclei isolation kit (Sigma) according to the manufacture's protocol. In vitro reverse transcriptase reactions were carried out at room temperature for 40 min in a volume of 250 µl of transcription buffer containing nuclei, 100 mM KCl, 10 mM Tris (pH 7.5), 3 mM MgCl, 2 mM dithiothreitol, 400 units of rRNasin (Promega), 10% glycerol, 2 mM ATP, 2 mM CTP, 2 mM GTP, 1 mM UTP, and 0.8 mM Biotin-16-UTP. Reactions were stopped by adding 500 µl of RNeasy lysis buffer followed by total RNA extraction using RNeasy mini kits (Qiagen). Newly synthesized RNA transcripts were isolated using a µMACS Streptavidin kit (Miltenyi Biotech, Aubum, CA) according to the manufacturer's instruction. Nascent PLK1 transcripts were quantified by qRT-PCR and normalized to the housekeeping gene GAPDH.
Reporter Gene AssaysThe two-plasmid reporter gene system used in this investigation has been described previously (12, 13). Briefly, promoters of interest were inserted into the first plasmid, promoterless ptTA, to induce production of a trans-activator (tTA) containing a tetracycline response element binding domain. This fusion protein binds to the second plasmid, pUHG10.3CAT, thereby trans-activating expression of a reporter gene, chloramphenicol acetyltransferase (CAT). The following promoter constructs were studied: human PLK1 promoter wild type pPLK11k (nt 1000 to +64), the mutant pPLK1-d(225/+9) with nt 225 to +9 deleted, the mutant pPLK1-(CDE/CHR) with nt 232 to +64 truncated, and the mutant pPLK1-(mCDE/mCHR) with a mutated CDE/CHR site. These promoter constructs were generated using PCR and the site-directed mutagenesis kit (Clontech), and their sequences were partly confirmed by DNA sequencing through Genosys Biotechnologies (Woodlands, TX).
PMA-differentiated U937 cells were transfected with the above PLK1 promoter constructs using a previously described method (13). After transfection, the cells were treated with GSNO (400 µM) or GSH (400 µM) for another 24 h. The reporter gene CAT activity was measured using an ELISA kit (Roche Diagnostics) and normalized to
-galactosidase expressed by a co-transfected internal pSV
-Gal control (Promega, Madison, WI).
EMSAPMA-differentiated U937 cells were cultured for 3 h with GSH (400 µM, control) or GSNO (400 µM). EMSA were performed with 15 µg of nuclear extract and double-stranded DNA probes labeled with biotin-N4-CTP according to manufacturer's instructions (Pierce). The probes purchased from Sigma were as follows: wild type CDE/CHR probe (5'-TCCCAGCGCCGCGTTTGAATTC-3') representing the nt 7 to +14 section of the human PLK1 promoter; mCDE/mCHR (5'-TCCCAGCttCGCGTTTcgaaTC-3') with both CDE and CHR mutated; mCDE/CHR (5'-TCCCAGCttCGCGTTTGAATTC-3') with only CDE mutated; CDE/mCHR (5'-TCCCAGCGCCGCGTTTcgaaTC-3') with only CHR mutated. For competition assays, 100-fold molar excess of unlabeled probe was added 10 min prior to the corresponding labeled probe.
siRNA Knockdown ExperimentsSpecific p21/Waf1 siRNA (SMARTpool-siGENOME duplex) and scrambled II siRNA (control) were purchased from Dharmacon, Inc. (Chicago, IL). Cells (1 x 106) were transfected with 1 µg of p21/Waf1 siRNA or the control using NuceofectorTM kit-V (Amaxa, Gaithersburg, MD) following the manufacturer's instruction. After 48 h recovery, the transfected cells were treated with GSH (400 µM) or GSNO (400 µM) for 3 or 16 h for later measurement of mRNA and protein expression, respectively.
Statistical AnalysisPLK1 mRNA decay was analyzed using a two-way analysis of variance procedure (the first factor was time, the second factor was treatment), followed by appropriate post hoc tests for the comparisons of interest. Various mRNA levels and PLK1 promoter activity were compared with paired t tests. Data are presented as mean ± S.E. of at least three independent experiments. Differences were considered significant when two-sided p values were equal to or less than 0.05.
| RESULTS |
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p38 MAPK Dependence of NO· Effects on p21/Waf1 and PLK1 Gene ExpressionNO· has been shown to regulate the expression of a number of cell cycle genes including p21/Waf1 in a variety of cell types (15, 29). Consistent with this, p21/Waf1 mRNA was 2-fold up-regulated by GSNO compared with GSH control (p = 0.0001; Fig. 2A). Changes in mRNA levels corresponded to concomitant changes in protein (Fig. 2B).
Previously, the p38 MAPK dependence of the NO· effect on p21/Waf1 expression was suggested by the ability of a p38 MAPK inhibitor to block it (15). Here, we transfected a dominant-negative p38 MAPK mutant construct (DN-p38 plasmid) into PMA-differentiated U937 cells to test the involvement of p38 MAPK in p21/Waf1 and PLK1 regulation by NO·. As shown in Fig. 3, A and B, NO· consistently up-regulated p21/Waf1 mRNA but down-regulated PLK1 in empty vector transfected U937 cells (p
0.007 for both). Transfection of cells with the DN-p38 plasmid eliminated NO· effects on both p21/Waf1 and PLK1 mRNA expression (p > 0.7 for both, comparing GSNO to GSH; Fig. 3, A and B).
Effect of p21/Waf1 Knockdown on NO· Regulation of PLK1 ExpressionNext, we tested the hypothesis that NO· regulation of PLK1 is mediated through its effects on p21/Waf1 using siRNA knockdown. As seen in Fig. 4A, NO· increased p21/Waf1 protein expression in cells transfected with scrambled siRNA control (p = 0.009; GSNO versus GSH within control). In contrast, transfection of specific p21/Waf1 siRNA not only knocked down p21/Waf1 expression by 70% (p = 0.001 for p21/Waf1 siRNA versus Control within GSH; Fig. 4A) but also substantially reduced the up-regulatory effect of NO· on this protein (Fig. 4A). Associated with this, PLK1 mRNA expression was significantly increased by p21/Waf1 knockdown in both the absence and presence of NO· (p < 0.002 for both, comparing p21/Waf1 siRNA to control siRNA within the GSH and GSNO conditions; Fig. 4B). Moreover, GSNO compared with GSH reduced PLK1 mRNA by 50% in control siRNA transfected cells (p = 0.00008; Fig. 4B); this effect was blunted to only 15% in p21/Waf1 siRNA transfected cells (p < 0.08 for an interaction; post hoc p < 0.05, comparing the effect of NO· in scrambled siRNA transfected cells to p21/Waf1 knockdown; Fig. 4B). Consistent with these changes in mRNA, p21/Waf1 knockdown significantly induced the expression of PLK1 protein (p < 0.02 for p21/Waf1 siRNA versus Control within GSH; Fig. 4C) while also blocking its repression by NO· (p > 0.8 for GSNO versus GSH within p21/Waf1 siRNA; Fig. 4C). These results and our previous findings (15) suggest that NO· down-regulation of PLK1 is mediated through p38 MAPK stabilization of p21/Waf1.
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Similar to the wild type promoter pPLK11K, truncation at nt 1000 to 232 created a mutant pPLK1-(CDE/CHR) that while much shorter than pPLK11K, still had an intact CDE/CHR site. This mutant, like the wild type promoter, was also inhibited by NO· treatment by about one-half (p = 0.004, GSNO versus GSH for pPLK1-(CDE/CHR); Fig. 5B). Comparing pPLK1-(CDE/CHR) with pPLK1-(mCDE/mCHR), mutation of both the CDE and CHR sequences not only increased base-line promoter activity by about 2-fold (p = 0.016, pPLK1-(CDE/CHR) versus pPLK1-(mCDE/mCHR) for GSH; Fig. 5B) but also abolished the NO· effect (p = 0.93, GSNO versus GSH for pPLK1-(mCDE/mCHR); Fig. 5B). In Fig. 5C, NO· repression of PLK1 promoter activity (p = 0.0014; GSNO versus GSH) was prevented by SB202190, a specific p38 MAPK inhibitor (p = 0.2; SB/GSNO versus SB/GSH). Neither NO· nor SB202190 altered the activity of the double mutant promoter pPLK1-(mCDE/mCHR) (p > 0.1 for all; Fig. 5C). These results suggest that NO·-p38 MAPK signaling inhibits PLK1 transcription through CDE/CHR-mediated gene repression.
In further support of the above conclusion, EMSAs were performed using a biotin-labeled CDE/CHR probe corresponding to the proximal PLK1 promoter sequence. As shown in Fig. 5D, two major DNA-protein complexes, C1 and C2, were detected. NO· increased C1 but reciprocally decreased C2 (Fig. 5D, lane 1 versus lane 2). Both complexes were competed off with excess unlabeled CDE/CHR (Fig. 5D, lane 3), but not mCDE/mCHR, a modified probe with mutations at CDE and CHR (Fig. 5D, lane 4), thereby confirming the specificity of C1 and C2. Interestingly, unlabeled mCDE/CHR with a mutated CDE, but an intact CHR site, competed with complex C1, while reciprocally increasing C2 (Fig. 5D, lane 5 versus lane 2), a binding interaction opposite from the action of NO·. Different from mCDE/CHR, but like CDE/CHR, unlabeled CDE/mCHR with an intact CDE, but mutated CHR site, prevented formation of both the C1 and C2 complexes (Fig. 5D, lane 6). These results suggest that both the CDE and CHR sequences of CDE/CHR are important for the transduction of NO· effects to the PLK1 promoter. The CDE site appears to bind basic components of a functional repressor complex, while the CHR site interacts with at least one protein that modifies this repression. The transduction of NO·-p38 MAPK-p21/Waf1 signals to the PLK1 promoter is associated with a specific DNA-protein binding event at the CHR site.
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| DISCUSSION |
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NO· has potent anti-tumor and anti-atherosclerotic effects that are closely associated with its ability to block cell proliferation (17, 20). This activity of NO· has been ascribed to both cGMP-dependent and -independent mechanisms. Experiments in rodents have found, with a few notable exceptions (18, 30), that NO· controls the cell cycle through cGMP. In contrast, the anti-proliferation effects of NO· in human cells have been more frequently associated with cGMP-independent signaling (29, 31). Consistent with this, our recent microarray study in U937 cells, revealed that NO· exerts broad control over the cell cycle and cell proliferation through cGMP-independent mechanisms (15). NO· up-regulated E2F1 thereby controlling the transcriptional activation of a number of downstream G1/S phase genes with E2F promoter elements (15). The master cell cycle regulator p21/Waf1 was also induced by NO·, an effect that was dependent on p38 MAPK-mediated stabilization of p21/Waf1 mRNA (15). Ultimately, NO· exposure resulted in cellular arrest in G2/M, an event associated with the down-regulation of 24 G2/M phase genes including PLK1 (15). Of these 24 genes, 8 (again including PLK1) are known targets of p21/Waf1 (15). In agreement with these previous microarray results, our current investigation confirmed that NO· up-regulated p21/Waf1 and down-regulated PLK1 at both the mRNA and protein levels. Unlike p21/Waf1, the mRNA stability of PLK1 was not affected by NO·, but rather NO· was found to repress PLK1 transcription. The mRNA stabilizing effect of NO·-mediated p38 MAPK activation is transduced by AU-rich elements in the 3'-untranslated region of affected transcripts, a feature of p21/Waf1 that is not shared by PLK1 (15, 16, 32, 33). Although cell cycle-related fluctuations in PLK1 have been ascribed to post-transcriptional mechanisms in murine erythroleukemia cells (11), PLK1 expression levels appear to be determined by transcriptional regulation under most experimental conditions (9, 10), as was observed in the present study.
It has been well documented that NO· can activate p38 MAPK and Erk1/2 in various cell types including U937 cells (1416, 33). Activation of p38 MAPK or Erk1/2 has been frequently linked to downstream consequences such as changes in gene transcription and mRNA stability (1416, 33). As discussed above, NO· was previously showed to stabilize p21/Waf1 mRNA through a p38 MAPK-dependent mechanism (15). Here, we found similarly that NO· repression of PLK1 transcription appeared completely dependent on p38 MAPK activation in PMA-differentiated U937 cells. These results and previous reports demonstrating that p21/Waf1 inhibits the expression of many late phase cell cycle genes including PLK1 (9, 15, 34) suggested that NO·-p38 MAPK signaling might exert its repressive effect on PLK1 transcription through up-regulation of p21/Waf1. Although alternative mechanisms, such as direct NO· effects on transcription factors that regulate PLK1 remain possible, the current experiments strongly implicate the importance of p21/Waf1 induction by NO·. Knockdown of p21/Waf1 increased base-line expression and substantially diminished PLK1 responsiveness to NO·.
p21/Waf1 is a multipotent CDK inhibitor. By binding to CDK complexes, it inhibits CDK activities, resulting in retinoblastoma-associated protein dephosphorylation and subsequent sequestration of E2F family proteins (9, 34). This is widely believed to be the mechanism by which p21/Waf1 down-regulates a large group of E2F-dependent genes involved in DNA replication and cell cycle progression (9, 21, 34). Besides this CDK-dependent role in gene regulation, p21/Waf1 has also been found to directly interact with a variety of transcription factors, such as E2F1, MYC, GADD45, and C/EBP-
(21, 35). Through modulating the function of these transcription factors, p21/Waf1 exerts additional gene regulatory effects in a CDK-independent manner. The PLK1 gene promoter has an E2F1 site, but p21/Waf1 transduced NO· repression of PLK1 transcription here through a proximal CDE/CHR sequence and not the E2F1 site. Deletion or site-directed mutagenesis of this canonical CDE/CHR sequence entirely eliminated the NO· effect. This experimental evidence also excludes the possibility that NO· down-regulated PLK1 transcription through a nearby Sp1 site in the PLK1 promoter, a mechanism of NO·-mediated regulation that has been demonstrated for other genes (12, 13).
Consistent with our conclusion, NO· induced protein binding to the CHR sequence of the CDE/CHR site as manifested by an increase in complex C1 by EMSA. Reciprocally, a lower molecular weight complex C2 was reduced in abundance suggesting that C1 is derived from C2 by the binding of an additional component. Competition assays with excess amount of various unlabeled sequences using an EMSA approach indicate that C2 represents a primary repressor complex bound to CDE. C1 is formed when a NO·-p21/Waf1-responsive component combines with C2, an event that requires an intact CHR sequence. As such, NO· increases the C1 band and concomitantly decreases C2. Likewise, mCDE/CHR binds the NO·-responsive, CHR-specific component, eliminating the C1 band and leaving a more intense C2 band composed of primary complex bound to the CDE sequence of the labeled CDE/CHR probe. The identities of CDE/CHR-binding proteins in differentiated U937 cells are still unclear. CDE sequences in the promoters of B-MYB (36), CDC2 (37), and cyclin A (38) have been reported to bind repressive E2F transcription factors. Here, p21/Waf1, itself or E2F family transcription factors, are unlikely candidates in our experiments as the corresponding antibodies did not supershift either of the CDE/CHR-protein complexes (data not shown).
Like PLK1, many other G2/M phase cell cycle genes including cyclin A, cyclin B1, CDC2, CDC25C, CENP-A, and TOPOII
(topoisomerase II
) contain CDE/CHR sites in their promoters (9, 10). NO· inhibited expression of these genes in differentiated U937 cells (15), as did p21/Waf1 in breast and colon cancer cell lines (9, 34, 39). Therefore, NO· may similarly down-regulate these G2/M phase cell cycle genes through p38 MAPK activation and induction of p21/Waf1 as it does for PLK1. Overexpression of these cell cycle genes has been observed in a variety of human cancers and associated with a poor prognosis (9, 39, 40). Conversely, deletion of these genes has produced G2/M phase arrest and the death of cancer cells (4, 6). Therefore, the NO·-p38 MAPK-p21/Waf1 signaling cascade, shown here to repress PLK1, may have therapeutic implication for conditions in which cell proliferation has a major role in disease pathogenesis.
| FOOTNOTES |
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1 These authors contributed equally to this work and are joint first authors. ![]()
2 To whom correspondence to: Critical Care Medicine Dept., Clinical Center, Bldg. 10, Rm. 2C145, National Institutes of Health, Bethesda, MD 20892. Tel.: 301-496-9320; Fax: 301-402-1213; E-mail: rdanner{at}nih.gov.
3 The abbreviations used are: PLK1, polo-like kinase 1; NO·, nitric oxide; CDE/CHR, cell cycle-dependent element/cell cycle gene homology region; EMSA, electrophoretic mobility shift assays; GSNO, S-nitrosoglutathione; qRT-PCR, quantitative real-time PCR; CDK, cyclin-dependent kinase; MAPK, mitogen-activated protein kinase; PMA, phorbol 12-myristate 13-acetate; siRNA, small interfering RNA; CAT, chloramphenicol acetyltransferase; nt, nucleotide(s); GAPDH, glyceraldehyde-3-phosphate dehydrogenase. ![]()
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