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J. Biol. Chem., Vol. 282, Issue 27, 19710-19715, July 6, 2007
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From the Departments of Physiology and Biochemistry and Biophysics, University of California, San Francisco, California 94158
Received for publication, February 20, 2007 , and in revised form, May 9, 2007.
| ABSTRACT |
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| INTRODUCTION |
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APC substrates contain amino acid sequence motifs that are required for their ubiquitination and are thought to interact with activator subunits and other sites on the enzyme (5). The most commonly found sequence is the destruction-box (D-box), a highly degenerate motif based on the sequence Rxx-LxxxxN (6, 7). A second common motif is the KEN-box (KENxxxN) (8). In a few rare cases, APC target destruction depends on sequences that are quite distinct from D- and KEN-boxes (912). The substrate features that allow recognition by the APC remain poorly understood, and our knowledge of APC-substrate interactions would benefit from a more extensive list of APC substrates.
In addition to its functions in the mitotic cell cycle, the APC is required during meiosis, a specialized form of nuclear division in which a single round of chromosome duplication is followed by two rounds of chromosome segregation (meiosis I and meiosis II). Budding yeast carrying mutations in essential subunits of the APC arrest in metaphase I (13, 14); the APC is also required for spore wall development after meiosis (15). As in mitosis, progression through the two meiotic divisions requires APCCdc20-mediated destruction of securin and cyclins (13, 16). In addition, meiotic progression in yeast depends on a meiosis-specific APC activator, Ama1, whose function remains unclear. Cells lacking AMA1 arrest after the second meiotic division with elongated spindles and fail to develop spore walls (13, 14, 17). APCAma1 also contributes to substrate degradation in anaphase I, as ama1
cells do not efficiently degrade securin or the cyclins (13). The APC activator Cdh1 does not seem to contribute significantly to progression through the meiotic divisions.
It is not known if the APC helps govern the meiosis-specific processes that lead to segregation of homologs in the first division and sister chromatids in the second (18). In the first division, both sister chromatids in each homolog must be attached to the same spindle pole (monopolar orientation, in contrast to the bi-orientation of mitosis). Monopolar orientation depends on kinetochore proteins called monopolins, which are released from the kinetochores after the first division, allowing sisters to bi-orient on the second meiotic spindle (19, 20). Another key feature of the first division is that cohesion between sister chromatids is lost along chromosome arms but protected at the centromeres by the protein Sgo1 (21, 22), so that sister chromatids remain linked for successful segregation in the second division. The mechanisms that trigger the loss of monopolins and the deprotection of centromere cohesion remain unclear, but both occur during anaphase I and one intriguing possibility is that the APC is involved.
To address the possibility of additional APC functions in meiosis, we performed a screen for meiotic substrates of the APC in budding yeast. We identified the meiotic regulator Spo13 as an APC target that is degraded during anaphase I. Intriguingly, Spo13 helps promote monopolar chromosome attachment and the protection of centromeric cohesion, and spo13
cells perform a single aberrant chromosome division (23, 24). We identified an unusual destruction sequence, distinct from D- and KEN-boxes, that is required for Spo13 destruction; mutation of this sequence prevents Spo13 destruction in anaphase I. We suggest that degradation of Spo13 by the APC is one of several redundant mechanisms that facilitate the bi-orientation of sister chromatids in the second meiotic division.
| EXPERIMENTAL PROCEDURES |
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pds1
clb5
SIC110X) was a kind gift of David Toczyski (3).
Measurement of Protein Stability in VivoW303 MAT a yeast, carrying low copy plasmids with galactose-inducible SPO13-TAP or spo13-db-TAP, were arrested in raffinose (2%) media supplemented with either
factor (G1) or nocodazole (M) for 3 h. Once arrested, galactose (2%) was added to the media to induce production of Spo13-TAP or Spo13-db-TAP. After 2 h, dextrose (2%), and cycloheximide (10 µg/ml) were added to simultaneously repress transcription and translation. Samples were withdrawn at the indicated times, protein extracts prepared, and immunoblot analysis performed to assess protein stability.
APC ReactionsThe desired genes, or fragments of the SPO13 gene (Fig. 2, AC), were amplified by PCR, using primers that add a T7 promoter upstream of the protein-coding sequence. Substrates were then produced in rabbit reticulocyte lysates (Promega) by coupled transcription and translation in the presence of [35S]methionine, as described previously (25, 26). Alternatively, plasmids containing the SPO13-TAP or the spo13-(L26A)-TAP gene (Figs. 1A and 2, D and F) were used as templates for translation in vitro. Following translation, 10 mM N-ethylmaleimide (NEM) was added to translation mixtures to inactivate ubiquitin chain-forming activities that otherwise extend the products of subsequent APC reactions. 10 mM dithiothreitol was then added to inactivate NEM. As described previously (25, 26), substrates (in NEM-inactivated reticulocyte lysates) were mixed with ubiquitin, ATP, E1, E2, APC, and baculovirus-derived Cdh1 and incubated for 45 min at room temperature unless otherwise indicated. In some experiments (Fig. 2F), Cdh1 and Cdc20 were produced by translation in vitro, and the lysate used directly in the APC reactions; NEM was not added in these experiments because it inactivates Cdc20.
Mitotic ExperimentsTo determine the effect of SPO13 overexpression in mitotic cells, W303 MAT a yeast (with plasmids carrying galactose-inducible SPO13-TAP or spo13-db-TAP) were arrested in raffinose (2%) media supplemented with
factor (1 µgml-1) at 30 °C for 2 h. Galactose was added (2%) for 1 h, and cells were then released into fresh raffinose/galactose media.
Meiotic ExperimentsAll meiotic experiments were performed in the SK1 budding yeast strain. To introduce the spo13-L26A mutation, the SPO13 gene, including promoter, was subcloned into the Yplac211 vector, and site-directed mutagenesis was used to generate the L26A mutant. Digestion with PstI was used to integrate at the SPO13 locus, and the vector was selected against on 5-fluoroorotic acid media. PCR and sequencing were used to confirm that the L26A mutation was retained at the SPO13 locus. Diploid yeast were induced to undergo meiosis by the following protocol. Diploids were grown overnight in YPD media (yeast peptone + 2% dextrose) to saturation (A600 = 45). The following day, the yeast were diluted (A = 0.2) into YPA media (YP media + 2% acetate) and grown for a further 16 h. The yeast were washed in water and released into SPO media (2% acetate + 0.02% raffinose) at A = 1.8, and samples were processed for immunoblot analysis or immunofluorescence. The antibodies used were
-tubulin clone YOL1/34 (Serotec),
-HA clone 16B12 (Babco), and PAP (Sigma).
| RESULTS |
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As a positive control, we used the budding yeast securin, Pds1, a known APC substrate in both mitosis and meiosis (16, 28). Two of the 31 candidates, Spo13 and Ndt80, were detectably ubiquitinated. The best substrate was Spo13, which was ubiquitinated to an extent comparable to that seen with Pds1 (Fig. 1A). Incorporation of ubiquitin in Spo13 depended on both the APC and the activator Cdh1 (data not shown). A second protein, the meiotic transcription factor Ndt80, was ubiquitinated poorly (data not shown). We therefore focused our efforts on Spo13.
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In budding yeast, the APC is active in G1 cells but is inactive in cells arrested in M phase (1). Therefore, meiotic APC substrates ectopically expressed in mitotic cells should be unstable in G1 and stable in M phase. Spo13 was expressed from the GAL110 promoter in budding yeast cells, which were arrested in either
factor (G1) or nocodazole (M phase). After expression for 2 h, transcription and translation were simultaneously repressed by addition of both dextrose and cycloheximide, and immunoblotting was used to assess protein levels at various times thereafter. Spo13 was more unstable in G1-arrested cells than in M phase-arrested cells, consistent with it being an APC substrate (Fig. 1B).
Disappearance of Spo13 in Anaphase IWe examined the status of Spo13 in meiotic cells (Fig. 1C). Consistent with previous observations, Spo13 was visibly present in metaphase I cells but specifically reduced in anaphase I cells (23), when the APC is active. Unlike securin (16), Spo13 did not re-accumulate in metaphase II cells or thereafter.
Identification of a Novel APC Destruction Sequence in Spo13Spo13 is one of the proteins we screened that contains no clearly identifiable D-box and KEN-box. To identify the regions of Spo13 important for APC-mediated destruction, we generated a number of fragments of Spo13 by PCR, translated them in vitro, and subjected them to APC reactions. A fragment of the Hsl1 protein was used as a positive control (29). We found that the APC destruction sequence of Spo13 lies in the N terminus (Fig. 2A), as all the N-terminal fragments were efficiently ubiquitinated, while a C-terminal fragment (residues 104292) was not. The first 15 amino acids of Spo13 contain a sequence (RxxL) that is reminiscent of a D-box. However, fragments lacking this region (residues 15195 and 1-(
69)-195) were still ubiquitinated efficiently (Fig. 2B). A fragment lacking the first 30 amino acids of Spo13 (residues 30195) was resistant to APC-mediated ubiquitination, strongly implicating amino acids 1630 as the critical residues (Fig. 2B). Analysis of 3-residue truncations through this region revealed that while a fragment of amino acids 24195 was ubiquitinated by the APC, a fragment of amino acids 27195 was not, suggesting that residues 2527 are required for the APC-mediated ubiquitination of Spo13 (Fig. 2B).
The amino acid sequence of this region of Spo13 does not closely resemble any previously described APC destruction motif. To identify the destruction sequence of Spo13, we generated single point mutations (to alanine) in amino acids 2432 in PCR fragments spanning residues 1195 of the Spo13 protein. Mutation of three residues inhibited APC activity toward Spo13 (Fig. 2C). Two amino acids, glutamate 28 and asparagine 32, were partly required for full activity. The most critical residue was the leucine at position 26, which was required for the appearance of ubiquitinated products.
To confirm the importance of this residue, we performed a time course in vitro using either full-length Spo13 or Spo13-(L26A) (hereafter referred to as Spo13-db). While high molecular weight ubiquitination products and substrate depletion were seen rapidly with wild-type Spo13, neither was observed with Spo13-db, even after 1 h of reaction (Fig. 2D). Thus, ubiquitination of Spo13 in vitro can be largely prevented by a single point mutation of leucine 26. Three residues (Leu26, Glu28, and Asn32) are therefore the key determinants of APC ubiquitination of Spo13, suggesting that the destruction sequence is LxExxxN (Fig. 2E).
APCCdc20 Ubiquitination of Spo13The APC activator used in these experiments, Cdh1, is not thought to contribute significantly to budding yeast meiosis (13, 14), suggesting that Spo13 is targeted in vivo by the APC in combination with one or both of the other activators, Cdc20 and Ama1. We found that cells lacking Ama1 efficiently degrade Spo13 in anaphase I (data not shown), suggesting that Cdc20 is the relevant activator. However, as meiotic cells lacking Cdc20 do not progress into anaphase I, we could not assess the importance of Cdc20 in Spo13 destruction in vivo. We therefore tested Spo13 ubiquitination by APCCdc20 in vitro. Active Cdc20 cannot be produced in insect cells or bacteria, but small amounts can be prepared by translation in rabbit reticulocyte lysates. Using this approach, we found that APCCdc20 was an effective catalyst of Spo13 ubiquitination and that this activity was greatly reduced when Spo13-db was used as substrate (Fig. 2F). These results support the possibility that APCCdc20 promotes Spo13 degradation in anaphase I.
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Previous work suggests that Spo13 may act as an APC inhibitor (23). Consistent with this possibility, overexpression of SPO13 in mitotic cells is known to delay the onset of anaphase and reduce cell viability (30, 31). Our evidence that Spo13 is an APC substrate raised the possibility that SPO13 overexpression blocks mitotic progression and causes lethality by competitively inhibiting substrate binding to the APC. However, we found that overexpression of the Spo13-db mutant, which presumably interacts poorly with the APC, caused a delay in anaphase onset and mitotic exit that was greater than the delay induced by overexpression of wild-type Spo13 (Fig. 3B). These results argue that Spo13 is not delaying anaphase onset and causing cell death by binding the APC but through some other mechanism.
To further investigate the possibility that Spo13-induced toxicity is due to inhibition of the APC, we analyzed the effects of Spo13 in a yeast strain engineered to survive in the absence of APC function (3). Overexpression of SPO13 in this strain was lethal (Fig. 3C), further indicating that the toxic effects of Spo13 are not due to APC inhibition but due to interference with some other essential cellular process.
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To assess the phenotype of the L26A mutation in more detail, we compared meiotic progression in SPO13 and spo13-db cells. Progression through the two chromosome divisions was very similar in the two strains, as similar accumulation of 2n and 4n DNA species was seen (Fig. 4C). Thus, the continued presence of Spo13 during and after anaphase I did not have a profound effect on meiotic progression. We also dissected tetrads to assess viability. Wild-type yeast were 98% viable and spo13-db yeast were 97% viable, indicating no loss of viability from the continued presence of Spo13 in late stages of meiosis.
| DISCUSSION |
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The primary sequence of Spo13 contains no close matches to either of the well described APC recognition sequences, the D- or KEN-boxes (6, 8), and we identified a novel destruction sequence, LxExxxN, that is required for its ubiquitination by the APC in vitro and its degradation in vivo. The amino acid requirement of the Spo13 destruction box sequence is distinct from any other previously described APC substrate destruction box sequences, although it resembles slightly the end of the D-box sequence (RxxLxxxxN). Spo13 could not have been predicted to be an APC substrate solely on the basis of its sequence. We suspect that there are a number of degenerate sequences that can act as destruction motifs, and the Spo13 sequence is one such variant. Clearly, more analysis of the sequence requirements of D- and KEN-boxes is needed before we can identify novel APC substrates based on their primary sequence alone.
Sister-chromatid pairs make monopolar attachments in meiosis I and switch to bipolar attachments in meiosis II. A failure to switch attachment modes from monopolar to bipolar would be catastrophic for high fidelity chromosome segregation. The regulatory molecules that mediate the switch from monopolar to bipolar attachment are currently unknown, but the APC is an excellent candidate because it is activated just before the monopolin complex is lost from chromosomes in anaphase I (16). Spo13 is a key regulator of monopolar chromosome attachment, as spo13
cells fail to load adequate amounts of the monopolin complex and make mostly bipolar attachments at metaphase I (23, 24). How Spo13 specifically promotes monopolin loading is unknown, but our observations that Spo13 is an APC substrate suggested that degradation of Spo13 allows the unloading of the monopolin complex in anaphase I. However, spores from cells containing the stabilized spo13-db mutant were fully viable, demonstrating that degradation of Spo13 alone is not the only mechanism to ensure unloading of monopolin in anaphase I. How else might the APC contribute to the chromosome attachment switch? We could find no evidence from either our in vivo or in vitro assays that the known subunits of the monopolin complex (Mam1, Lrs4, and Csm1) (19, 20) are APC substrates (data not shown). At least two other regulators of monopolar chromosome attachment, the protein kinase Cdc5 (32, 33) and the Cdc7 kinase-associated protein Dbf4 (34), are known APC substrates in mitosis (35, 36). We introduced stabilized mutant versions of these proteins into spo13-db cells to test if their degradation contributes to loss of monopolin. However, the triple mutant (spo13-db, cdc5-db, dbf4-db) displayed normal meiotic progression and spore viability (data not shown). Furthermore, in anaphase I, both the Mam1 and Lrs4 subunits of the monopolin complex efficiently disappeared from chromosomes in the triple mutant, similar to wild-type cells (data not shown). Thus, additional mechanisms must exist to drive the down-regulation of monopolar chromosome attachment between the meiotic divisions.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental Table 1. ![]()
1 To whom correspondence should be addressed: UCSF, Genentech Hall, Rm. N312B, 600 16th St., San Francisco, CA 94158-2517. Tel.: 415-476-6695; Fax: 415-476-5233; E-mail: David.Morgan{at}ucsf.edu.
2 The abbreviations used are: APC, anaphase-promoting complex; NEM, N-ethylmaleimide; HA, hemagglutinin; DAPI, 4',6-diamidino-2-phenylindole; E1, ubiquitin-activating enzyme; E2, ubiquitin carrier protein. ![]()
| ACKNOWLEDGMENTS |
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