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J. Biol. Chem., Vol. 282, Issue 3, 1948-1955, January 19, 2007
Filamin-regulated F-actin Assembly Is Essential for Morphogenesis and Controls Phototaxis in Dictyostelium*![]() ![]() ![]() ![]() ![]() 1
From the
Institut für Biochemie I,
Received for publication, November 2, 2006
Dictyostelium strains lacking the F-actin cross-linking protein filamin (ddFLN) have a severe phototaxis defect at the multicellular slug stage. Filamins are rod-shaped homodimers that cross-link the actin cytoskeleton into highly viscous, orthogonal networks. Each monomer chain of filamin is comprised of an F-actin-binding domain and a rod domain. In rescue experiments only intact filamin re-established correct phototaxis in filamin minus mutants, whereas C-terminally truncated filamin proteins that had lost the dimerization domain and molecules lacking internal repeats but retaining the dimerization domain did not rescue the phototaxis defect. Deletion of individual rod repeats also changed their subcellular localization, and mutant filamins in general were less enriched at the cell cortex as compared with the full-length protein and were increasingly present in the cytoplasm. For correct phototaxis ddFLN is only required at the tip of the slug because expression under control of the cell type-specific extracellular-matrix protein A (ecmA) promoter and mixing experiments with wild type cells supported phototactic orientation. Likewise, in chimeric slugs wild type cells were primarily found at the tip of the slug, which acts as an organizer in Dictyostelium morphogenesis.
Dictyostelium discoideum is a simple model organism for the analysis of multicellular development (1, 2). The cells live as individual amoebae in the soil preying on bacteria. When food is depleted and starvation is imminent, the previously independent amoebae form aggregation streams, which break up into groups of up to 105 cells before they form cylindrical migrating slugs. Slugs are sensitive to light, pH, and even slight differences in temperature, which allows them to migrate toward an optimal location for fruiting. Slugs are polar with a tip at the anterior consisting of prestalk cells, whereas the posterior consists predominantly of prespore cells. The tip of the slug senses the light, which controls the migration and phototactic turning (3). Genetic analysis of slug behavior suggested that as many as 55 genes are involved in phototaxis and that several of the encoded proteins regulate signal transduction pathways involving the intracellular messengers cAMP, cGMP, inositol 1,4,5-trisphosphate, and Ca2+ (4-6). This suggests the existence of a fairly complex signaling system. The phototaxis defect in mutants lacking RasD and several RasGEFs points out the involvement of the Ras signaling pathway (7, 8). Escalante et al. (9) reported that the BTB protein MigA is necessary for chemotaxis at the single cell level and for slug migration at the multi-cellular level. Several cytoskeleton-associated proteins such as GRP 125 (10) or villidin (11) and proteins involved in signal transduction and regulation of the cytoskeleton like CAP (12) are also involved in controlling phototactic slug behavior. Furthermore, cells lacking sphingosine-1-phosphate lyase, an enzyme that functions in fatty acid metabolism, showed extremely limited directional migration, and the slugs developed directly at the site of aggregation (13).
Fisher et al. (6) and Wallraff and Wallraff (14) tested the behavioral deficits in the slugs of several mutant strains of D. discoideum lacking different F-actin-binding proteins. Strains defective in the production of F-actin cross-linking or bundling proteins such as
Filamins are involved in several cellular processes. They function in maintaining the cortical actin network by cross-linking filaments and affect the organization and stabilization of these networks by interwebbing them with membrane proteins and receptors. Furthermore, they are involved in signal transduction and interactions with several components of the NF
Structurally filamins are homodimers with large polypeptide chains that associate at their C termini (24, 25). Their conserved N-terminal actin-binding domains (ABD)2 belong to the ABDs common to the members of the
The Ig fold domains of the filamins can be mechanically unfolded. Using atomic force microscopy 50-220 pN have been reported; this unfolding is reversible, and the unfolded chains fold back when the external force is removed (31-33). The unfolding of the ddFLN rod was particularly interesting as one of the repeats, repeat 4, unfolded in two steps and refolded along the same pathway (33, 34). Because of the reversible unfolding of their Ig fold domains, filamins can be stretched to several times the length of their native state and could act as extensible linker in the cells and play a mechanical role. Here we study Dictyostelium filamin. Using the filamin-deficient mutant we analyze the efficiency of various mutant proteins to rescue the phototaxis defect and show that only a fully functional molecule can correct the defect.
Dictyostelium Strains and Growth ConditionsD. discoideum strain AX2 was used as wild type strain, GHR is a FLN- mutant generated by gene inactivation through homologous recombination (35), and HG1264 is a FLN- mutant generated by chemical mutagenesis (21). Wild type and mutant strains were grown at 21 °C in liquid nutrient medium with shaking at 160 rpm (21) or on SM agar plates with Klebsiella aerogenes (36). For development in suspension, axenically grown cells were washed twice with Soerensen phosphate buffer, pH 6.0, and resuspended in Soerensen phosphate buffer (17 mM sodium-potassium-phosphate, pH 6.0) at a concentration of 107 cells/ml and shaken at 160 rpm at 21 °C. Chimeric mixtures of strains were prepared by harvesting cells grown on K. aerogenes, washed free of bacteria, counted, and mixed at desired proportions, and 108 cells were plated per phosphate agar plate (17 mM sodium-potassium-phosphate, pH 6.0) or 105 cells/water agar plate for phototaxis experiments.
Phototaxis AssayAX2 and mutant strains were cultivated on Klebsiella lawns on SM agar plates. Using sterile toothpicks, the vegetative cells were transferred to 90-mm water agar plates to obtain migrating slugs (6, 37). The plates were wrapped in an opaque black plastic sheet with a slit of
Vector ConstructionVectors for expression of full-length ddFLN and its domains as GFP fusion proteins in D. discoideum under the control of the actin-15 promoter and actin-8 terminator were constructed using pDEX-GFP (38) and p1ABsr8 (39). The plasmid pDXA-GABD expressing the actin-binding domain as a GFP fusion protein (GFP-ABD) was obtained from Dr. David Knecht (40). To create an ecmA-controlled full-length ddFLN-GFP fusion, a BglII-XhoI insert from FLN-GFP in p1ABsr8 that carries the filamin sequences fused to the GFP sequences but lacks 100 bp from the N-terminal end was cloned in frame into the pDd15-ecmA vector cut with BglII-XhoI (41). The N-terminal 100 bp were retrieved from FLN-GFP p1ABsr8 by BamHI-BglII digestion and cloned into BglII-cut pDd15-ecmA vector already carrying the remainder of the FLN-GFP sequences. CotB::FLN-GFP was constructed by ligating a HindIII-XhoI insert from p1ABsr8 FLN-GFP into the HindIII-XhoI-digested pCotB vector (42). FLNrod2-, FLNrod3-, FLNrod4-, and FLNrod5-GFP corresponded to proteins harboring the ABD and following two, three, four, or five Ig repeats of the rod. FLN The plasmids were introduced into AX2 wild type cells, the ddFLN minus mutants HG1264 or GHR by electroporation. Stable transformants were selected in the presence of 8 µg/ml G418 (Invitrogen) or 3.5 µg/ml Blasticidin S (ICN Biochemicals) as appropriate or both (in case of cotransformation). The transformants were identified by visual inspection under a fluorescence microscope or by colony blotting followed by immunological detection of the expressed proteins in Western blots. In general, the data obtained with transformants of HG1264 are presented. Fluorescence MicroscopyAxenically grown cells or chimeric slugs developed on phosphate agar plates were fixed in cold methanol at -20 °C. ddFLN was detected using mAb 82-382-8 (21) and actin by mAb act1 (43) followed by incubation with Cy3-labeled goat anti-mouse IgG secondary antibody (Sigma-Aldrich). Confocal images of live or fixed cells were taken with an inverted Leica TCS-SP laser scanning microscope with a 10x or 63x PL Fluotar 1.32-0.6 oil immersion objective. The 488-nm argon ion laser line was used for excitation of GFP, and the 568-nm krypton ion laser line was used for excitation of the Cy3-fluorophor. The images were processed using the accompanying software. For determination of the distribution of FLN-GFP and GFP-tagged variants of FLN, the cells were kept for 30 min in Soerensen phosphate buffer containing 10 mM EDTA to have cells that were perfectly round. Analysis was done by confocal microscopy. A section through the cells was chosen for analysis, and the intensity was determined using Image J. The highest and the lowest intensities were taken for determination of the ratio. More than 50 cells were analyzed in each case.
Immunoprecipitation of Proteins from Cell LysatesAxenially growing cells were harvested and washed twice with Soerensen phosphate buffer. Cell pellets resuspended in two volumes of the homogenization buffer (30 mM Tris/HCl, pH 7.4, 2 mM dithiothreitol, 2 mM EDTA, 4 mM EGTA, 5 mM benzamidine, 0.5 mM phenylmethylsulfonyl fluoride, 1 tablet complete mini-protease inhibitor mix (Roche Applied Science)/10 ml, and 30% sucrose) were lysed through Nucleopore membrane filters. The complete lysis of the cells was checked by visual inspection under the light microscope. The lysate was centrifuged at 10,000 x g for 25 min at 4 °C. The supernatant was precleared by incubation with protein A-Sepharose beads for 1 h at 4 °C. 600 µl of cleared supernatant were incubated with 100-800 µl of hybridoma supernatant of K3-184-2, an mAb specific for GFP, 325 µl of 5 x immunoprecipitation buffer (0.5 M potassium phosphate buffer, pH 7.9, 0.375 M NaCl, 25 mM EDTA, 5 mM benzamidine, 2.5 mM phenylmethylsulfonyl fluoride) and protein A-Sepharose beads at 4 °C for 3 h. The beads were washed three times with 1x immunoprecipitation buffer and then incubated with 5x SDS sample buffer for 5 min at 95 °C. The released proteins were resolved on a 10% SDS-polyacrylamide gel, and the resulting Western blot was probed with mAb 82-421-5 specific for the ABD of ddFLN (21). Miscellaneous MethodsWestern blots were analyzed using the ECL detection system. The native gels were done as described by Schägger (44). Analytical gel filtration analysis was done on a Sephadex G200 column using the SMART system (GE Healthcare). The cells were lysed by freeze thawing, and the 20,000 x g supernatant was loaded onto the column. RNA isolation and Northern blot analysis were as described (21). Immunofluorescence methods are described in Ref. 12, and the nuclei were stained with 4,6-diamidino-2-phenylindole. Monoclonal antibodies recognizing ddFLN are described in Brink et al. (21), the GFP-specific monoclonal antibody K3-184-2 is described in Ref. 12, and GFP-tagged actin for expression in D. discoideum was generated as in Ref. 45.
Properties of Full-length and Truncated Filamin ProteinsIn their natural habitat Dictyostelium slugs migrate photo- and thermotactically to the soil surface where they form fruiting bodies for spore dispersal in search of a new food depot. Whereas AX2 slugs migrate straight toward the point of light entry, mutant slugs lacking filamin were disoriented, and their phototaxis was bimodal (6, 14). To understand the functional role of the protein at the molecular level, we generated plasmids coding for GFP-tagged full-length filamin (FLN-GFP), FLN rod2-GFP lacking repeat 2 of the rod domain, FLN rod4-GFP lacking repeat 4, the repeat that exhibits an unusual folding behavior, filamins carrying different numbers of repeats (FLNrod2-GFP to FLNrod5-GFP), and GFP-rod, in which GFP replaces the ABD, and expressed them in AX2 and HG1264 or GHR (Fig. 1A). We also included pDXA-GABD expressing a GFP-ABD fusion protein in our studies (40).
First we excluded the possibility that the addition of the GFP moiety to the C-terminal residues of the full-length molecule interfered with the dimerization of FLN-GFP. Filamins dimerize through the last repeats that interact with each other to form an extended
Analysis of living and fixed cells showed that all GFP-tagged fusion proteins with the exception of GFP-rod were present in the cytosol and at the cell cortex and accumulated at leading fronts during cell movement. We also noted that full-length FLN was more prominent at the cell cortex and less enriched in the cytosol as compared with the modified FLN proteins (Fig. 2A). This was confirmed in a quantitative analysis where we measured the relative fluorescence intensity across the cells. FLN-GFP fluorescence at the cell periphery was six times stronger than inside the cell, for FLN rod4-GFP we noted a 1.9-fold enrichment at the periphery, and for FLNrod2-GFP we noted a 1.7-fold peripheral enrichment (Fig. 2, B and C). GFP when expressed in strain AX2 is diffusely distributed throughout the cells and does not show an enrichment in particular places as reported before (45). In fixed cells the cortical staining coincided largely with the actin staining (Fig. 3). For GFP-tagged rod, which lacks the ABD, we observed a difference in localization in wild type and mutant cells. In AX2 cells its distribution paralleled the one observed for FLN-GFP, whereas in FLN- cells it was present in the cytoplasm in a homogeneous fashion and was not enriched at the cortex (Fig. 4, A and B). The different distribution in wild type versus mutant cells was explained by the formation of heterodimers with the endogenous protein in AX2 that targeted the fusion protein to the cell cortex. In co-immunoprecipitation experiments we could precipitate endogenous filamin together with GFP-rod using the GFP-specific mAb K3-184-2. Probing the immunoprecipitate with mAb 82-421-5 specific for filamin ABD, we detected a protein of 120 kDa corresponding to filamin (Fig. 4C). We conclude from these observations that the ABD targets DdFLN to the cell cortex and the cortical actin cytoskeleton; however, there appear to be additional determinants in the molecule that contribute to the correct localization as taken from the results obtained with truncated filamins (Fig. 2, B and C).
F-actin Cross-linking by Filamin Is Essential for Dictyostelium PhototaxisDictyostelium cells are able to sense light both as single cells as well as in the multicellular slug stage, and wild type slugs migrate straight toward a light source (Fig. 5A). Filamin-deficient strains have a strong phototactic defect and migrate in an angle toward the light source and have a shorter migration path (for comparison see Fig. 7C and Fig. 1 in Ref. 6; ABP120-deficient). In phototaxis assays, HG1264 slugs expressing FLN-GFP showed a behavior like AX2 wild type and migrated in a straight path toward the light (Fig. 5B), whereas mutant slugs expressing FLN proteins carrying a shortened rod (FLNrod5-GFP to FLNrod2-GFP) migrated like the parent strain HG1264 in a wide angle toward the light showing no improvement in phototactic orientation, although the migration paths were longer (Fig. 5C). Molecules lacking internal repeats, namely FLN
Expression of ddFLN in Prestalk Cells Rescues the Phototaxis Defect in the MutantSlugs consist mainly of two cell types: prespore and prestalk cells. We therefore tested in which cell type filamin function is needed for normal phototaxis. To address this we expressed filamin under the control of the ecmA promoter, a prestalk cell-specific promoter, and the prespore cell-specific cotB promoter. The ecmA promoter is strictly expressed at the anterior one-tenth portion of the slug (Fig. 6A), and expression of the cotB promoter is restricted to the posterior two-thirds of the slug (41, 42). After culmination, the cells in the rear of the slug eventually will form spores. Upon cell type-specific expression we found that only expression of FLN-GFP under the control of the ecmA promoter rescued the phototactic defect completely, whereas slugs expressing filamin-GFP under the cotB promoter showed the mutant phenotype in phototaxis (Fig. 7, A and C). Filamin Function Is Necessary for Tip FormationFilamin-deficient mutants undergo a normal development and follow the morphogenetic program. They have a tip as the morphogenetic organizer and form migrating slugs. However, the tip does not correctly function in phototactic orientation. The phototaxis rescue by ecmA::FLN-GFP raises the possibility that the expression of ddFLN in pstA cells may help in sorting out this cell type to the tip during Dictyostelium morphogenesis. To test this, we mixed wild type and mutant cells in various ratios. The use of actin-GFP expressing wild type cells allowed us to distinguish both strains easily. We observed that 30% of AX2 cells in a chimeric mixture with HG1264 rescued the phototaxis defect, suggesting that ddFLN is necessary for cell sorting (Fig. 7B). Microscopic images of the chimeric slugs showed that the AX2 cells accumulated in the anterior tip in a location similar to the one of ecmA::FLN-GFP-expressing cells (Fig. 6B). In control experiments we excluded that the expression of actin-GFP affected the localization of these cells in slugs. When we mixed AX2 with AX2 expressing GFP-actin, we found that the GFP-tagged cells were distributed throughout the slug and were not specifically enriched in the posterior or anterior part of the slug (Fig. 6, C and D).
Filamin-deficient cells can undergo normal development and form normal looking fruiting bodies consisting of a stalk and a spore head, indicating that the processes involving differentiation into prestalk and prespore cells and that their correct sorting along the anterior-posterior axis takes place (21). This implies that as multicellular development proceeds, a tip is formed that acts as signaling center and produces cAMP waves passing through the mound. The tip functions in the multicellular stages of Dictyostelium in a way similar to morphogenetic organizing centers in metazoans and organizes patterning and regulates cell fate decisions. In the slug, the tip continues to function as a signaling and organizing center by generating oscillatory cAMP waves that are propagated through the slug and are responsible for cell movement in the slug (46, 47). Here we show that although FLN- strains form a tip, in mixing experiments with wild type cells, the wild type cells sort to the tip. These results and the results from rescue experiments with mutant cells expressing ddFLN under the control of a prestalk promoter versus a prespore promoter underline the role of filamin in morphogenesis as has been suggested from mutations in the human FLN genes (18). The experiments presented here were mainly concerned with the rescue properties of filamin proteins in phototaxis. Two hypotheses have been proposed to explain phototactic turning (3, 5, 48). The optical hypothesis assumes that the pseudoplasmodium acts as a cylindrical lens, causing stronger stimulation of light locally and speeding up cell movement in the tip, thus leading to bending of the anterior zone toward the light source. The signal transduction or sign reversal model assumes that light acts directly on physiological processes of the cell and on cell-cell signaling, thereby shifting the position of the organizing center in the tip. Both hypotheses require a "sensor," which acts as a photoreceptor. Searching the Dictyostelium genome did not result in the identification of obvious candidates for a photoreceptor, a cryptochrome, or phytochrome or light sensory domains, although numerous genes coding for seven transmembrane receptors or phytochromes that are histidine kinases are present (49). Our data suggest that F-actin cross-linking by filamin is essential for phototactic turning of Dictyostelium slugs because shortened filamin molecules containing different numbers of repeats that bind to but no longer cross-link actin filaments do not lead to a reversal of the phototaxis defect. The importance of F-actin cross-linking was also recognized during the analysis of Drosophila oogenesis (20). In Drosophila oogenesis filamin is involved in early follicle cell morphogenesis. Follicle cells are important for germline cyst encapsulation. Filamin alleles leading to the expression of C-terminally truncated forms still allowed cyst encapsulation and egg chamber formation while interfering with ring canal assembly. One can assume two roles for filamin in these processes; full-length filamin allows recruitment of filamentous actin to germline ring canals and the maintenance of the cortical actin cytoskeleton in nurse cells, whereas the truncated forms are sufficient for early follicle cell migration. It was proposed that the latter molecules generate a mechanically stable cortex required for the shape changes and cell contact formation during migration. Similarly, slug migration is improved when filamin molecules are present in the cell cortex. This might allow the cells in the slug to perform interactions with the surrounding cells and undergo cell shape changes as they migrate.
Filamins lacking internal repeats, FLN The failure of Dictyostelium FLN- cells in phototaxis and tip cell formation and the rescue activity of full-length FLN point directly to an involvement of the protein in signaling. Thus it might well be that it is crucially involved in the generation of a cytoskeletal network that allows the formation of signaling complexes near the membranes or that it functions as a sensor molecule as described above. Investigations by Dormann and Weijer (46) have provided compelling evidence that phototactic movement of the slug is connected to cAMP signaling, and one possibility is that cAMP signaling during the slug stage is disturbed in the filamin minus mutant because of altered expression of the components of the cAMP signaling system (reviewed in Ref. 47). This is supported by a microarray analysis where we compared the gene expression in wild type and FLN- cells that indicated that genes regulating cAMP levels and cell-cell adhesion molecules are altered in their expression (data not shown). The down-regulation of the cAMP phosphodiesterase gene (PDE), which is normally expressed in prestalk cells as a result of the activity of a specific promoter (50), and the up-regulation of its inhibitor, the glycoprotein phosphodiesterase inhibitor, could cause elevated levels of cAMP. An increased extracellular cAMP concentration in the mutant might interfere with the formation of the three-dimensional scroll wave by increasing the length of the adaptation and thus the period of wave propagation. Generation of a PDE mutant pointed out the essential role of PDE in slug morphogenesis. Its role is also supported by results obtained from experiments in which phosphodiesterase inhibitor expression from a prestalk-specific promoter inhibited PDE activity and blocked slug morphogenesis (51). The role of ddFLN in phototactic migration is probably complex. From our results we conclude that the protein functions as an F-actin cross-linking protein and is also involved in signaling, which controls the slug migration at the multicellular stage of Dictyostelium development. Expression of the full-length protein in prestalk cells is essential and sufficient for a complete rescue. In the tip it may be necessary for propagation of the scroll wave, which controls slug migration. Filamin might also support the formation of a dynamic structure surrounding the organization center, and its loss in this region may cause bimodal phototaxis.
* This work was supported by the Deutsche Forschungsgemeinschaft, SFB 413, Köln Fortune, and the Fonds der Chemischen Industrie. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 1 To whom correspondence should be addressed: Center for Biochemistry, Institute of Biochemistry I, Medical Faculty, University of Cologne, Joseph-Stelzmann-Str. 52, 50931 Köln, Germany. Tel.: 49-221-4786980; Fax: 49-221-4786979; E-mail: noegel{at}uni-koeln.de.
2 The abbreviations used are: ABD, actin-binding domain(s); GFP, green fluorescent protein; mAb, monoclonal antibody; ecmA, extracellular matrix protein A.
We appreciate the insightful comments of Dr. G. Glöckner concerning the photosensory genes of Dictyostelium and thank Dr. F. Rivero for discussion and Daniela Rieger for help with phototaxis.
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