|
Advertisement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
J. Biol. Chem., Vol. 282, Issue 36, 26185-26194, September 7, 2007
RAVE Is Essential for the Efficient Assembly of the C Subunit with the Vacuolar H+-ATPase*From the Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210
Received for publication, May 2, 2007 , and in revised form, June 21, 2007.
The RAVE complex is required for stable assembly of the yeast vacuolar proton-translocating ATPase (V-ATPase) during both biosynthesis of the enzyme and regulated reassembly of disassembled V1 and V0 sectors. It is not yet known how RAVE effects V-ATPase assembly. Previous work has shown that V1 peripheral or stator stalk subunits E and G are critical for binding of RAVE to cytosolic V1 complexes, suggesting that RAVE may play a role in docking of the V1 peripheral stalk to the V0 complex at the membrane. Here we provide evidence for an interaction between the RAVE complex and V1 subunit C, another subunit that has been assigned to the peripheral stalk. The C subunit is unique in that it is released from both V1 and V0 sectors during disassembly, suggesting that subunit C may control the regulated assembly of the V-ATPase. Mutants lacking subunit C have assembly phenotypes resembling that of RAVE mutants. Both are able to assemble V1/V0 complexes in vivo, but these complexes are highly unstable in vitro, and V-ATPase activity is extremely low. We show that in the absence of the RAVE complex, subunit C is not able to stably assemble with the vacuolar ATPase. Our data support a model where RAVE, through its interaction with subunit C, is facilitating V1 peripheral stalk subunit interactions with V0 during V-ATPase assembly.
Vacuolar proton-translocating ATPases (V-ATPases)2 are conserved in all eukaryotic cells where they function to acidify internal organelles such as the lysosome/vacuole, Golgi apparatus, secretory vesicles, and endosomes. V-ATPases couple hydrolysis of cytoplasmic ATP to transport of protons from the cytosol into intracellular compartments. Organelle acidification is essential for a wide range of cellular processes including protein sorting in the biosynthetic and endocytic pathways; protein processing, activation, and degradation; cellular ion homeostasis; and coupled transport of small molecules (1–4). V-ATPases also have been identified in the plasma membrane of certain specialized cells where they pump protons from the cytosol out of the cell (1, 5). The structure and subunit composition of V-ATPases is very similar in all organisms from yeast to humans. They are multisubunit complexes composed of two domains. The V1 domain is a peripheral cytoplasmic complex composed of eight different subunits (subunits A–H), and it contains the sites of ATP hydrolysis. The V0 domain is an integral membrane complex that is composed of six different subunits (subunits a, d, e, c, c', and c''). It comprises the proton pore. The V1 and V0 domains must be structurally and functionally coupled for ATP-driven proton translocation to occur. V1 complexes that are not attached to V0 at the membrane cannot hydrolyze MgATP, and V0 complexes in the membrane that are not attached to V1 are not able to transport protons (6, 7).
The biosynthetic assembly pathway for V-ATPases is not completely understood. Free V1 and V0 complexes exist in vivo in both yeast and mammalian cells (8–11). Independent assembly of preassembled V1 and V0 subcomplexes, however, is probably not the predominant pathway for biosynthetic assembly. There is evidence that supports an integrated assembly of V1 and V0 subunits with initial association of individual V1 and V0 subunits followed by the addition of subunits from both domains (12, 13). In addition to the initial biosynthetic assembly, an important mechanism for regulation of V-ATPase activity is reversible disassembly of assembled complexes into free V1 and V0 domains in response to extracellular glucose concentrations (14). In yeast cells, glucose deprivation for as little as 5 min triggers dissociation of
A novel regulator of V-ATPase assembly, the heterotrimeric protein RAVE (regulator of the H+-ATPase of vacuolar and endosomal membranes), mediates both the biosynthetic assembly and the glucose-induced reassembly of the V-ATPase in yeast (17, 18). RAVE was first identified as a Skp1-containing complex that binds to free cytosolic V1 complexes (18). RAVE is a stable complex composed of three subunits: Rav1p, Rav2p, and Skp1p. rav1 The interaction between RAVE and V1 is lost in mutants lacking two V1 subunits, E and G (17). These two subunits, present in at least two copies/V1 complex, are believed to form one or more peripheral stalks connecting the catalytic head group and the V0 sector. Subunit C is another V1 peripheral stalk component that is associated with subunits E and G of the V1 complex and subunit a of the V0 complex in the assembled V-ATPase (19). Studies in yeast have produced genetic, biochemical, and structural data supporting a role for subunit C in both the stability of the V1/V0 holoenzyme and in regulation of reversible assembly/disassembly of the complex (20, 21). In this work we provide evidence that RAVE interacts with subunit C in the cytosol and that this interaction is independent of RAVE/V1 binding. In the absence of RAVE function, subunit C is not able to stably assemble with the V1 and V0 subcomplexes of the V-ATPase at the vacuole. Our results support a model in which RAVE influences V-ATPase peripheral stalk subunit interactions via a chaperone type assembly function.
Materials and Growth Media—Oligonucleotides were synthesized by MWG Biotech. TaKaRa LA-Taq was purchased from Fisher, and Pfu I DNA polymerase was from Stratagene. Zymolyase 100T was from MP Biomedicals, and concanamycin A was from Wako Biochemicals. Restriction enzymes and other molecular biology reagents were from New England Biolabs. Monoclonal antibody against the Myc epitope (9E10) was obtained from Roche Applied Science, and HA.11 (16B12) against the HA epitope was from Covance Research Products. Alexa Fluor 488 goat anti-mouse IgG used for immunofluorescence was purchased from Invitrogen. Alkaline phosphatase-conjugated secondary antibody and pGEM-T Easy TA cloning vector were from Promega. Horseradish peroxidase-conjugated c-Myc (9E10):sc-40 was from Santa Cruz Biotechnology. Yeast and Escherichia coli media were from Fisher. All other reagents were purchased from Sigma. Yeast cells were grown in yeast extract –peptone –2% dextrose (YEPD) medium or fully supplemented minimal medium (SD) lacking individual nutrients as described previously (22). For growth and testing of vma mutant strains, YEPD was buffered to pH 5.0 or 7.5 with 50 mM potassium phosphate, 50 mM potassium succinate.
Strain Construction—All of the strains were derived from SF838-5A
Two-hybrid Analysis—To introduce RAV1 and RAV2 into the pAS2 two-hybrid plasmid (29), RAV1 and RAV2 were amplified from wild type genomic DNA with primer pairs RAV1NBamHI/YJR9 and RAV2NBamHI/YDR9, respectively. BamHI sites were introduced just upstream of the ATG start codon. The resulting PCR fragments were cloned into the pGEM-T Easy TA cloning vector and sequenced for accuracy. RAV1 and RAV2 inserts were excised using BamHI and SalI and cloned into the BamH1/SalI cleaved pAS2 vector. A similar method was used to clone RAV1, RAV2, VMA4, and VMA10 into the pACT2 (29) two-hybrid vector with the BamHI sites in frame with the activation domain of the pACT2 plasmid and using primer pairs RAV1NBamHI/YJR9, RAV2NBamHI/YDR9, VMA4BamHI/VMA4+200, and VMA10NBamHI/VMA10-2, respectively. PCR inserts were cloned into the pGEM-T Easy vector and sequenced, and inserts were excised with BamHI and SalI and cloned into the BamHI/XhoI cleaved pACT2 vector. To clone VMA5 into the pACT2 vector, the oligonucleotide pair VMA5-5'2hyb/VMA5-3'2hyb was used to amplify VMA5 from wild type genomic DNA and processed as above except that BamHI and SacI were used to excise the VMA5 insert from the pGEM-T Easy vector and cloned into the BamHI/SacI cleaved pACT2 vector. pAS2 plasmids were introduced into the two-hybrid reporter strains PJ69-4A (MATa), PJ69-4A vma4 , and PJ69-4A vma10 , and pACT2 plasmids were introduced into PJ69-4 (MAT ), PJ69-4 vma4 , and PJ69-4 vma10 reporter strains as described above, and transformants were selected on SD plates lacking tryptophan or leucine for selection of the pAS2 and pACT2 plasmids, respectively. To test for two-hybrid interactions, a MATa strain containing a pAS2 plasmid construct was crossed to a MAT strain containing a pACT2 plasmid and diploids were selected on SD –trp, –leu. The resulting diploid strains were tested for a two-hybrid interaction by plating onto SD plates lacking tryptophan, leucine, adenine and histidine (SD –trp –leu –ade –his) (24).
Immunoprecipitations and Immunoblots—For coimmunoprecipitations of Rav1pMyc with HA-Vma5p and Vma2p, cytosolic fractions were obtained from the Rav1p-Myc HA-Vma5p strains as described (30). Briefly, the cells (100 A600 of each strain) were lysed by agitation with glass beads, and cytosol was obtained by centrifugation for 30 min at 100,000 x g in a Beckman TLA-100 ultracentrifuge. Protein concentrations of the cytosolic fractions from the various strains were measured by Lowry assay (31); 0.4 mg of protein was directly precipitated with trichloroacetic acid, and 4.0 mg was combined with 100 µl of anti-Vma2p monoclonal antibody (13D11) or 6 µl( Other Biochemical Techniques—Vacuolar vesicles were isolated as described (32). ATP hydrolysis activity was determined at 37 °C using a coupled enzyme assay (33) in the presence and absence of 100 nM concanamycin A. For immunoblotting, vacuolar vesicles were solubilized in cracking buffer. For all immunoblots, the samples were separated by SDS-PAGE and then transferred to either nitrocellulose or polyvinylidene difluoride membranes. The blots were probed with monoclonal antibodies 13D11, 7A2, and 10D7 against V1 subunits B and C and V0 subunit a, respectively (34). Primary antibodies were bound by alkaline phosphatase-conjugated goat anti-mouse secondary antibody and detected by colorimetric assay as described (35). Western blot signals were quantitated using Image J (National Institutes of Health). Rav1p-Myc was detected with mouse monoclonal antibody 9E10 or horseradish peroxidase-conjugated 9E10 antibody. The antibodies were detected on blots either as described above or by using ECL detection reagents from Amersham Biosciences to detect the primary horseradish peroxidase-conjugated 9E10 antibody. Microscopy and Immunofluorescence—Strains carrying the VMA2-GFP construct were grown in YEPD at 30 °C to 1.0 A600/ ml, and GFP fluorescence was observed on a Zeiss Axioskop II microscope under fluorescein fluorescence optics. The images were captured using a Hamamatsu CCD camera. Indirect immunofluorescence microscopy was performed as described (32). Anti-Vma2p (13D11) and anti-HA monoclonal antibodies were used at dilutions of 1:10 and 1:100, respectively. Secondary Alexa Fluor 488 goat anti-mouse IgG (2 µg/µl) was used at a 1:200 dilution. The cells were visualized by fluorescence microscopy as described above.
RAVE Binds to Subunit C—The binding of RAVE to V1 is almost completely lost in the vma4 and vma10 mutants, which lack subunits E and G, respectively (17). Based on these results we hypothesized that RAVE binds to the stalk region of the cytosolic V1 complex, specifically subunits E and/or G. To examine further the nature of RAVE/V1 binding, we looked at pairwise interactions between RAVE subunits and V1 subunits in two-hybrid assays (see "Experimental Procedures"). We found that Rav1p interacts with Rav2p and Skp1p of the RAVE complex and Vma4p (subunit E), Vma10p (subunit G), and Vma5p (subunit C) of the V1 complex. Rav2p interacts with Rav1p and Vma5p, but not with Skp1p, Vma4p, or Vma10p (Fig. 1A). The remaining V1 subunits (Vma1p, Vma2p, Vma7p, Vma8p, and Vma13p) did not interact in two-hybrid tests with Rav1p or Rav2p (data not shown).
The disruption of the RAVE/V1 interaction in subunit E and G deletion strains (17) predicted positive interactions in the two-hybrid assay between RAVE and subunits E and/or G, but the RAVE interaction with subunit C was surprising. As noted above, subunit C is released from both V1 and V0 domains during disassembly. Subunit C is isolated only at very low levels with cytosolic V1 subcomplexes from glucose-deprived cells or yeast cells containing only V1 subcomplexes because of a deletion of a V0 subunit (36). An interaction between RAVE and subunit C raises the question as to whether this interaction is independent of the RAVE/V1 interaction. It is possible that the two-hybrid interactions between the RAVE subunits and Vma5p are not due to direct binary interactions but instead result from other V1 subunits bridging the interaction. To address this question we tested these interactions in two-hybrid strains that lacked either subunit E or subunit G; loss of these subunits disrupts the RAVE/V1 interaction. Rav2p is able to interact with subunit C in these deletion strains (Fig. 1B). Similar tests with Rav1p were not possible because we were unable to make the appropriate diploid in a vma
RAVE Binds Subunit C Independent of V1 in Vivo—Based on the two-hybrid data presented in Fig. 1A above and on previous immunoprecipitation data in strains deleted for individual RAVE and V1 subunits, Rav1p appears to connect Skp1p, Rav2p, and V1 (17, 18, 39). To confirm a RAVE/subunit C interaction in vivo, we tested the ability of Rav1p to coprecipitate subunit C. A strain that expressed Vma5p containing a single HA epitope tag at the N terminus was constructed (see "Experimental Procedures"). HA-VMA5 was integrated into the yeast genome of a previously constructed Rav1p-Myc strain (17) creating a strain in which the sole copies of both VMA5 and RAV1 are epitope-tagged. This strain has a wild type growth phenotype and a V-ATPase complex with wild type assembly and activity properties in isolated vacuolar vesicles (data not shown). A cytosolic protein extract from the Rav1p-Myc HA-Vma5p strain was immunoprecipitated with anti-HA under native conditions, blotted, and probed with anti-Myc. Fig. 2A (left panel, second lane) shows that HA-Vma5p coimmunoprecipitates Rav1p-Myc, confirming an interaction between Rav1p and subunit C in vivo. Immunoprecipitation with anti-Vma2p (V1) in a vma5 strain is able to pull down Rav1p-Myc, demonstrating that RAVE can interact with V1 in the absence of its interaction with subunit C (Fig. 2A, right panel, first lane).
The two-hybrid data above suggested that the Rav1p/subunit C interaction occurs independent of the RAVE/V1 interaction. To verify this in vivo, we deleted the VMA4 gene in the Rav1p-Myc HA-Vma5p strain so that we could repeat the immunoprecipitation in a background where RAVE is not able to interact with V1. Fig. 2B (right panel, center lane) shows that HA-Vma5p coimmunoprecipitates Rav1p-Myc in a vma4
As noted above, stalk subunit C is required for activity and proper assembly of the yeast vacuolar ATPase, but after in vivo dissociation of the V-ATPase induced by glucose deprivation, very little subunit C is bound to either V1 or V0 (14, 40). Yeast strains lacking subunit C (vma5
rav1
To further characterize and compare assembly defects of V-ATPase complexes in rav1
RAVE Is Required for Subunit C Binding at the Vacuole—The localization of Vma2p-GFP in a rav1 strain shown in Fig. 3 indicates that a fairly significant amount of V1 subunits assemble at the vacuole in vivo. However, isolated vacuoles from the rav1 mutant strain shown in Fig. 4B have only 9.3% of subunit B compared with wild type vacuoles. Presumably the unstable V-ATPase complexes in the rav1 mutant do not remain intact through the vacuole vesicle isolation process, and significantly, the fraction of subunit C in rav1 vesicles is less than 20% of the fraction of subunit B found in rav1 compared with wild type vesicles (Fig. 4B). This result suggests that subunit C is depleted from V-ATPase complexes in rav1 mutants.
To compare the localization of subunit B and subunit C in the rav1
RAVE and Subunit C Stabilize V-ATPase Stator Stalk Assembly—The prior identification of subunits E and G as mediators of the RAVE-V1 interaction suggested an involvement of the RAVE complex in assembling the V1 peripheral stalk to the membrane-bound V0 complex. The results reported here provide additional support for the notion that RAVE, through its interaction with subunit C, may be facilitating V1/V0 peripheral stalk subunit interactions during V-ATPase assembly. There is significant homology between the V-ATPase and the bacterial and mitochondrial F1F0-ATP synthase (F-ATPase) in both structure and mechanism of action (1). Both the V-ATPase and the F-ATPase utilize a rotational catalytic mechanism (41). In the V-ATPase, ATP hydrolysis on the V1 A subunits drives rotation of the central stalk that is composed of the V1 subunits D and F and the V0 subunits d and the proteolipid ring (41, 42). Proton translocation occurs at the interface between the rotating proteolipid ring and the fixed V0 a subunit. For proper coupling of ATP hydrolysis at the catalytic sites and proton transport across the membrane, a stator structure is required that prevents rotation of the static domain (43). Numerous studies have shown that the stator of the E. coli F-ATPase is composed of a dimer of the b subunit of F0 (44). V-ATPase subunit G shows some homology to subunit b of the F-ATPase, and subunit G has been shown to interact strongly with subunit E (45–47). The V-ATPase E-G complex could be functioning in a manner similar to the b dimer of the F-ATPase, but it is notable that unlike the b subunit, subunit G has no membrane domain. Unlike the F-ATPase, the activity of the V-ATPase is down-regulated by reversible dissociation of the V1 and V0 domains of the enzyme in response to low extracellular glucose, and also unlike the F-ATPase, the dissociated V1 and V0 complexes are enzymatically inactive (6, 7). The role of the stator stalk (or stalks) of the V-ATPase, therefore, is 2-fold. It not only must act to stabilize the interaction between the V1 and V0 sectors but also must allow for the regulated disassembly/reassembly of the enzyme. Most of the V-ATPase subunits have functional homologues (although not necessarily sequence homologues) in the F-ATPase. The exceptions are V-ATPase peripheral stalk V1 subunits C and H and V0 subunit d and the cytoplasmic domain of subunit a.
Recent studies have implicated V1 subunit C as part of the stator holding the V1 and V0 domains together and as the primary regulator of reversible dissociation of the complex. Based on cysteine-mediated cross-linking, subunit C binds to key subunits of the peripheral stalk including E and G of the V1 complex and to subunit a of the V0 complex (19). This localization of subunit C has been confirmed by immunoelectron microscopy that shows subunit C bound to the stalk region at the V1/V0 interface (21). Interestingly, subunit C binds on the opposite side of V1V0 from subunit H, the other V1 subunit implicated in bridging subunits E and G of V1 and V0 subunit a (21, 48). This arrangement suggests that the two copies of subunits E and G (45) might be present as two distinct EG stalks, one bridged to V0 by subunit H and the other by subunit C. In yeast, subunit C deletion (vma5 ) mutants display a typical V-ATPase null phenotype, but a closer examination of the vma5 mutant reveals characteristics that distinguish it from other V1 subunits. In most V1 deletion mutants the V1 subcomplex is not able to assemble in the cytosol, whereas vma5 mutants can assemble both V1 and V0 subcomplexes (12). In this study we show that in a vma5 mutant a significant portion of a GFP-tagged V1 subunit is able to bind V0 at the vacuolar membrane in vivo. These V1V0 complexes, however, are not stable in in vitro isolations and do not support V-ATPase activity. We conclude from these data that a nonfunctional V1V0 complex is able to form in the absence of subunit C. RAVE mutants, rav1 and rav2 , show many similarities to vma5 mutants. A GFP-tagged V1 subunit in a rav1 mutant shows a localization that is very much like that seen in cells lacking subunit C. RAVE mutants have a partial Vma– phenotype that supports some assembly and some activity of the V-ATPase in vivo in contrast to the strong Vma– phenotype of vma5 mutants. Interestingly, a number of subunit C mutations exhibit growth phenotypes that are identical to rav mutants; that is they do not have a strong Vma– phenotype in vivo, but the V-ATPase complexes show assembly defects in vitro (49). The similarity in defects in subunit C function and RAVE function suggested to us that RAVE might be involved in the attachment of subunit C with the peripheral stalk of the V-ATPase.
One notable difference between the rav1
RAVE Is Required for Efficient Assembly of Subunit C with the V-ATPase—Vacuolar vesicles isolated from a rav1 RAVE Delivers Subunit C to V1/V0 in Biosynthesis and Reassembly—Both biosynthetic assembly of the enzyme and reversible disassembly of the assembled complexes establish the overall level of assembly of the V-ATPase. The RAVE complex is required for stable V-ATPase assembly in both processes, but where and when in the assembly process do V1, subunit C, and V0 come together? Does RAVE play a similar role in the assembly of the C subunit in both biosynthetic assembly and regulated reassembly? A clue to the assembly function of RAVE was provided by the independent isolation of a mutation in Rav1p (soi3-1) that suppresses the mislocalization of a Kex2p mutant with a defective trans-Golgi network localization signal (50). These studies identified a membrane-bound fraction of Rav1p in addition to the cytosolic fraction. In sucrose gradient fractionation, the membrane-associated Rav1p cofractionated in a dense fraction characteristic of early endosomes and localization of Rav1p-GFP was also consistent with localization to early endosomes (50). The conclusion from this work was that acidification of early endosomes was required for proper localization of trans-Golgi network proteins and that this acidification is regulated at the level of assembly of the V-ATPase. Therefore, a mutation in Rav1p (soi3-1) resulted in defective V-ATPase assembly at the early endosome. One possibility is that the fraction of Rav1p that is in the early endosome is functioning in the initial biosynthetic assembly of the V-ATPase, and the Rav1p fraction in the cytosol is involved in the regulated reassembly of disassembled V-ATPase complexes. The biochemical function of the RAVE complex could be the same in both places, and based on our current findings, RAVE is likely "chaperoning" or directing subunit C to properly orient the peripheral stalk subunits of the V1 and V0 complexes and assemble a stable active V-ATPase (Fig. 6). Why Would Subunit C Need a Specialized Chaperone?—If there are two peripheral stalks, as suggested by electron microscopy (21), then forming distinct interfaces with the V0 sector may require RAVE intervention during biosynthesis. In addition, RAVE may serve to keep subunit C away from cytosolic V1 sectors. If subunit C is, as has been proposed, the regulator of reversible dissociation of the V-ATPase, a chaperone may be needed to ensure that V1 and V0 functionally interact only when conditions in the cell require an active V-ATPase.
* This work was supported by a postdoctoral fellowship from the American Heart Association, New York State Affiliate (to A. M. S.) and National Institutes of Health Grant RO1 GM63742 (to P. M. K.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 1 To whom correspondence should be addressed: SUNY Upstate Medical University, 750 East Adams St., Syracuse, NY 13210. Tel.: 315-464-8742; Fax: 315-464-8750; E-mail: kanepm{at}upstate.edu.
2 The abbreviations used are: V-ATPase, vacuolar proton-translocating ATPase; F-ATPase, F1F0-ATP synthase; HA, influenza hemagglutinin epitope; GFP, green fluorescence protein; YEPD, yeast extract-peptone-2% dextrose media; SD, supplemented minimal medium with 2% dextrose.
We thank Ester Cobb for the pACT2-VMA5 plasmid and Maureen Tarsio for technical assistance and helpful discussions.
This article has been cited by other articles:
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Advertisement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||