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J. Biol. Chem., Vol. 282, Issue 48, 35018-35023, November 30, 2007
The Mitotic Regulator Survivin Binds as a Monomer to Its Functional Interactor Borealin*
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| ABSTRACT |
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| INTRODUCTION |
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Throughout mitosis, Survivin is present in the chromosomal passenger complex (CPC), where it is critically important for mitotic progression (8, 9). The CPC is currently known to have three members in addition to Survivin: the kinase Aurora B; an adapter protein, INCENP (inner centromere protein); and a recently discovered addition, Borealin (10-12). A key property of the CPC is that all members are obligate. Depletion of any one member causes mislocalization of all of the others and causes a variety of mitotic abnormalities, consistent with loss of complex function. Early in mitosis, the CPC is found along chromosome arms, but by prophase, it has concentrated at the inner centromeres. It is not clear why the CPC concentrates at the centromeres, as no direct receptor has been identified. One recent candidate is the structural component CENP-C (13), although direct binding to centromeric DNA has also been proposed (14). While at the centromeres, the CPC plays one of its best known roles as part of the spindle assembly checkpoint. Loss of spindle assembly checkpoint function leads to chromosome segregation errors and a failure of the cell cycle to arrest in response to spindle poisons. Once all chromosomes have achieved biorientation and are under tension between the spindle poles, the spindle assembly checkpoint no longer signals, and the cell enters anaphase. At this time, the CPC relocates once more away from the centromeres to the central spindle. As the cell reaches telophase, the CPC concentrates at the midbody, where it is essential for cytokinesis. Loss of CPC function at this stage causes a failure of cells to divide fully, leading to binucleate and, eventually, multinucleate cells.
A major structural role of the CPC is to target Aurora B kinase activity to its substrates at appropriate mitotic stages (3, 8, 9). Because of the mutual functional interdependence of the subunits at all mitotic stages, it has been difficult to dissect how this is achieved. It has been known for some time that the most important direct interaction of CPC members with Aurora B occurs through the short, highly conserved C terminus of INCENP, called the IN-box. This interaction activates the kinase, and the structure of this subcomplex of the CPC was determined recently (15). In contrast, the extreme N terminus of INCENP is important for Survivin binding. The discovery of the fourth passenger, Borealin, has greatly clarified some organizational aspects of this part of the CPC (10-12, 14, 16, 17). Significantly, it was observed by researchers working in different organisms that Borealin and Survivin form a robust binary complex in vitro (10, 11). It was further determined that this binary complex has enhanced affinity for INCENP compared with either protein alone (14, 16).
We decided to map the interacting regions in the binary complex of the human proteins to better understand the ligand recognition properties of Survivin and to gain insight into CPC organization and function. Through sequence analysis and truncation studies, we identified a minimal fragment of Borealin capable of high affinity complex formation with Survivin. Surprisingly, the crystal structures of two different complexes suggest that the accepted Survivin homodimer is not relevant to mitotic function. Instead, mutation of two key Borealin residues present in its interface with Survivin caused extensive mislocalization of CPC proteins, supporting the functional importance of the new binding interface observed in our structures.
| EXPERIMENTAL PROCEDURES |
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Coexpression and Copurification Studies—The appropriate Survivin and Borealin constructs were cotransfected into BL21(DE3)pLysS Rosetta 2 cells (EMD Biosciences). Positive colonies were selected on 50 µg/ml kanamycin and 50 µg/ml carbenicillin. Single colonies were grown in LB broth at 37 °C under antibiotic selection until culture density reached A600 = 0.6. Expression was induced by addition of 0.4 mM isopropyl β-D-thiogalactopyranoside, and the cultures were shaken overnight at 22 °C. Harvested cells were lysed in 100 ml of buffer A (150 mM Tris (pH 7.5), 250 mM NaCl, and 0.1 mM tris(2-carboxyethyl)phosphine) per liter of culture by passage through a Microfluidizer, and the soluble lysate was loaded onto a nickel-nitrilotriacetic acid (Ni-NTA)-agarose column (0.5 ml of resin/liter of culture; Qiagen Inc.). The column was washed with 20 volumes of buffer A containing 5 mM imidazole, and Survivin was eluted with 5 volumes of buffer A containing 250 mM imidazole. Samples of eluted fractions (10 µl) were loaded onto 10-20% Tris/glycine-polyacrylamide gels (Invitrogen) for analysis of coeluted proteins. Proteins were detected by Coomassie Blue staining. Confirmation of Borealin was done by Western blotting using an anti-Strep-tag primary antibody (Qiagen Inc.) followed by a rabbit anti-mouse secondary antibody conjugated to horseradish peroxidase (Zymed Laboratories Inc.).
Large-scale Purification of Complexes and Crystallization—Two complexes (full-length His6-Survivin plus Strep-tag-Borealin-(20-78) and His6-Survivin-(1-120) plus GB1-Borealin-(20-78)) were expressed and purified on Ni-NTA as described above. GB1 and His6 tags were removed by thrombin cleavage overnight. The proteins were further purified by size-exclusion chromatography on Sephacryl S-200 (GE Healthcare) in buffer A and then concentrated to 4 and 17 mg/ml, respectively. Concentrated complexes were dialyzed into buffer B (100 mM NaCl, 20 mM Tris (pH 7.5), and 0.1 mM tris(2-carboxyethyl)phosphine). Protein identities were verified by mass spectrometry and N-terminal sequencing. Note that removal of the GB1 tag was initially incomplete but that further slow cleavage occurred upon concentration, such that there was no tag present in the crystallized complex. The full sequences of expressed proteins and final cleaved chains are shown in supplemental Scheme S1.
Crystals of Borealin-(20-78) in complex with Survivin-(1-142) were grown by vapor diffusion in sitting drops containing 0.5 µl of protein and 0.5 µl of well solution (0.1 M NaHEPES (pH 7.5), 0.2 M CaCl2, and 28% (w/v) polyethylene glycol 400). The well solution for the complex with Survivin-(1-120) contained 0.1 M HEPES (pH 7.5), 10% (w/v) polyethylene glycol 8000, and 8% (v/v) ethylene glycol. Crystals were obtained after
2 days at 19 °C. Prior to data collection, crystals were immersed in artificial mother liquor consisting of the well solution plus 35% polyethylene glycol 400 (Survivin-(1-142) complex) or 20% glycerol (Survivin-(1-120) complex) and flash-cooled in liquid nitrogen.
Data Collection and Structure Solution—A data set for the Survivin-(1-142)-Borealin crystals was collected at beamline 5.0.1 at the Advanced Light Source (Berkeley Lab) and was processed with HKL software (supplemental Table S1) (18). The crystals belong to space group C2. The data are anisotropic with a functional resolution of
2.4 Å. The structure was solved by molecular replacement using human Survivin (Protein Data Bank code 1F3H) (4) as a search model. Initial electron density maps revealed clear helical density for Borealin. A model was built consisting of Borealin residues 21-76 and Survivin residues 5-141.
A 3.3-Å data set for the Survivin-(1-120)-Borealin crystals was acquired at beamline 9-2 at the Stanford Synchronized Radiation Laboratory and was processed with HKL software (supplemental Table S1) (18). The space group is I4122. The structure was solved by molecular replacement using the partially refined crystal structure of the Survivin-(1-142) complex and the program Phaser (CCP4, Daresbury Laboratory), revealing three complexes in the asymmetric unit. Each complex has density for Borealin residues 20-76 (plus one additional N-terminal residue from the thrombin cleavage site) and Survivin residues 5-119.
Both structures were refined with the program REFMAC5 and included TLS refinement (19). The final models have good stereochemistry: Ramachandran plots show that for the Survivin-(1-142) structure, 98.8% of all residues appear in the most favored or additionally allowed regions, with only two residues (1.2%) in generously allowed or disallowed regions (20). Likewise, for the Survivin-(1-120) complex, 98.2% of all residues appear in the most favored or additionally allowed regions, with only 1.7% of residues in generously allowed or disallowed regions.
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Fixed cells were washed with phosphate-buffered saline, permeabilized with 0.1% Triton X-100 for 5 min, and then blocked overnight in normal donkey serum (Jackson ImmunoResearch Laboratories). The primary antibodies used were rat anti-HA (1:1000; clone 3F10, Roche Applied Science), mouse anti-Aurora B (1:200; catalog no. 611082, BD Biosciences), and mouse anti-Survivin (1:200; catalog no. sc-17779, Santa Cruz Biotechnology, Inc.). These were diluted in donkey serum and added to blocked coverslips for 1 h. After washing, the appropriate secondary antibody (Cy2-conjugated donkey anti-rat or Cy3-conjugated donkey anti-mouse; 1:600; Jackson ImmunoResearch Laboratories) was added for 45 min in the presence of Hoechst 33342 (1:30,000; Invitrogen). Cells were washed, and coverslips were mounted on slides in ProLong Gold antifade reagent (Invitrogen). Images were captured using a Zeiss Axioplan 2 microscope with a x63 immersion objective and the acquisition program SlideBook (Intelligent Imaging Innovations, Inc.).
| RESULTS |
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-helical but does not predict any globular domains. However, it has been reported that Borealin-(1-141) is fully competent to bind Survivin (11). Within this N-terminal region are two potential coiled-coil sequences, one predicted strongly and a second predicted only weakly (Fig. 1A and supplemental Fig. S1). A series of truncated Borealin constructs was prepared, focusing on the predicted boundaries of the helical elements. These were coexpressed with full-length His6-tagged Survivin in Escherichia coli. Survivin was purified on Ni-NTA beads, and eluted protein was probed for copurifying Borealin fragments. A fragment as short as Borealin-(20-60) (encompassing the first predicted coiled coil) could be detected, but Borealin-(20-78) appeared to be the shortest fragment with full affinity (Fig. 1B). In addition to the strongly predicted coiled coil, this fragment includes at its C terminus a short segment highly conserved in the single human Borealin and all other vertebrate Borealins of the more common Dasra B subtype (supplemental Fig. S2) (12). A subset of Borealin fragments was tested for binding to truncated forms of Survivin (Fig. 1B). Taken together, these results suggest that the strongest interactions occur between Borealin residues 20-78 and the region of Survivin that follows the BIR domain, including the first part of the long helix. This region also includes the Survivin homodimerization interface (Fig. 1C). To better understand the interaction of Survivin with Borealin, we determined the x-ray crystal structures of both full-length Survivin and Survivin-(1-120) bound to Borealin-(20-78). The most striking aspect of both Survivin-Borealin complex structures is the 1:1 stoichiometry, which was unexpected based on the published structures of Survivin alone (Fig. 2A). Our complex structures show that Borealin wraps around Survivin, with the N-terminal residues of Borealin (residues 21-60) forming a long helix that packs against the Survivin C-terminal helix. This long Borealin helix is followed by two additional short helices that pack against the juncture of the Survivin BIR domain and its C-terminal helix. The Borealin-binding site overlaps with the Survivin homodimerization interface (4, 5, 7). Thus, Survivin cannot dimerize in this way when bound to Borealin. Closer examination revealed that the backbone conformation of Borealin-(64-73) is remarkably similar to that of Survivin-(92-101) in the homodimer, suggesting that this region of Borealin structurally mimics the displaced Survivin monomer (Fig. 2B).
The core of the interaction is Borealin-(65-74), which packs tightly against Survivin. In particular, the invariant Borealin Trp70 side chain enters an enlarged pocket on Survivin, where >95% of its solvent-accessible surface area is buried (Fig. 2C and supplemental Fig. S3). This suggests an explanation for the observed importance of this region in the truncation experiments (Fig. 1B). A second significant contact is provided by Borealin Tyr54 (
70% buried), which is present near the C terminus of the long Borealin helix. Trp70 and Tyr54 are the only Borealin residues to bury at least 100 Å2 of solvent-accessible surface in the complex. The total interface buried by the Survivin-Borealin interaction is large (
2800 Å2 in the Survivin-(1-142) complex), with Survivin and Borealin contributing equally to the contact surface. In comparison,
1000 Å2 is buried in the Survivin homodimer interface (5). This suggests that the interaction of Survivin with Borealin is stronger than the interaction of Survivin with itself. Uncomplexed Borealin-(20-78) was insoluble (precluding equilibrium affinity measurements), but the purification of the heterocomplex from a large excess of expressed Survivin (data not shown) supports a higher affinity interaction. Interestingly, the recognition of Borealin by Survivin is very different from typical IAP-type peptide-binding pockets on other BIR domains (such as XIAP or ML-IAP) (Fig. 2D).
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We assessed the solution stoichiometry of the Survivin-(1-142) complex by equilibrium and velocity ultracentrifugation (supplemental Fig. S5). The data are most consistent with a mixed population of 1:1 complex and a smaller amount of aggregate of higher order than 2:2. We see no significant population of 2:2 complex but cannot rule out the possibility that it might form under some conditions. Instead, the observed tendency of the binary complex to aggregate suggested the presence of an additional binding surface and the possibility that our Borealin fragment might be sufficient to recruit INCENP to Survivin. To test this, we coexpressed a previously described minimized INCENP construct, glutathione S-transferase-INCENP-(1-58) (14), and the binary complex. We found that Borealin-(20-78) and Survivin copurified with the INCENP fragment at apparently stoichiometric levels (supplemental Fig. S6).
To test the biological significance of the major binding interface seen in our crystal structures, we introduced two mutations into Borealin that might be expected to alter its interaction with Survivin (Y54A/W70A) (Fig. 2C). Given that Borealin-(1-60) (corresponding to the long helix) can bind weakly to full-length Survivin (Fig. 1), we tested whether the Y54A/W70A mutations affect binary complex formation between Survivin and Borealin-(20-78). Interestingly, we found that this binary complex could be purified from bacterial cultures in amounts comparable with those obtained with the wild-type fragment (data not shown), indicating that the mutant fragment retained significant affinity for Survivin.
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| DISCUSSION |
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It would appear that our Borealin mutant (Y54A/W70A) has the capacity to act in a dominant-negative manner and that it therefore interacts with at least one of the other passenger proteins or with a structural receptor for the complex. Our bacterial coexpression assay (with mutant fragment 20-78) suggests Survivin as a strong candidate. We observed prominent defects in translocation of CPC components to the central spindle and midbody in the presence of mutant Borealin. This is consistent with the recent report that binding of the C terminus of Survivin to Borealin is especially important for targeting to these subcellular structures (17). Intriguingly, the functional defects we observed suggest that some aspect of CPC structure other than Survivin binding per se is perturbed in the presence of the mutant. Possibilities include loss of affinity for INCENP, failure of the CPC to bind to other cellular components, and a conformational change in the CPC involving the interaction surface we have mutated. We conclude that the interaction mode we have identified in our crystal structures is present in the chromosomal passenger complex in human cells and that it is important for the full function of the complex.
| FOOTNOTES |
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* The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
The on-line version of this article (available at http://www.jbc.org) contains supplemental Figs. S1-S7, Table S1, Scheme S1, and references. ![]()
1 To whom correspondence should be addressed: Genentech, Inc., 1 DNA Way, MS 27, South San Francisco, CA 94080. Tel.: 650-225-5943; Fax: 650-225-3734; E-mail: andrea{at}gene.com.
2 The abbreviations used are: BIR, baculoviral inhibitory repeat; CPC, chromosomal passenger complex; Ni-NTA, nickel-nitrilotriacetic acid; HA, hemagglutinin. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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