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J. Biol. Chem., Vol. 283, Issue 15, 9651-9658, April 11, 2008
Solute Carrier 11 Cation Symport Requires Distinct Residues in Transmembrane Helices 1 and 6*
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| ABSTRACT |
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| INTRODUCTION |
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Prokaryotic orthologs of essential eukaryotic membrane transport functions represent attractive models to advance understanding of the mechanism of transport (8, 9). Studies from different groups showed that Escherichia coli proton-dependent manganese transporter (MntH)2 is a valuable system for structure/function studies of H+ and Me2+ symport (10–13). MntH TM topology was established and selected mutations resulted in similar phenotypes in MntH and Nramp2 variants (6, 14, 15). In addition, E. coli MntH wild-type (WT) lacks cysteine residues, and site-directed introduction of Cys moieties combined to thiol modifications allows for detailed structural and functional mapping (16).
SLC11-dependent transport is typified by broad selectivity (e.g. Mn2+, Cd2+, Fe2+, Co2+, and Ni2+) and Me2+-specific interactions, including a range of Me2+/H+ stoichiometries depending on external conditions (10, 17–19). The H+-dependent Me2+ transport mechanism of eukaryotic Nramp homologs was deduced from studies of Me2+ uptake and Me2+-evoked currents, the external pH altering the transporter affinity for Me2+ and the stoichiometry of H+ and Me2+ fluxes (2, 5). Kinetic models for H+-coupled transport usually imply that H+ binding or uptake depends at least partly on the membrane potential (
, and at high proton concentration (pH 5.5), large Me2+-induced currents are mainly due to H+ charge transfer across the membrane (17, 19).
To identify features defining the mechanism of transport of the SLC11 family, sites representing evolutionary type II rate shifts were targeted because they represent a radical shift in amino acid properties, which can contribute to functional divergence among homologous proteins including membrane proteins (20–22). Phylogenetic analyses distinguished the SLC11 family from a group of distantly related sequences (outgroup <30% amino acid identity). Four type II rate shifts were identified at TM sites displaying polar or charged SLC11-specific amino acids matched by distinct outgroup-specific residues (10). Reciprocal residue exchange and additional mutations at each of these sites in TMS1, TMS6, and TMS11 were characterized, showing individual roles of each site in the Me2+ and/or H+ symport (10); among them residue Asp34 appeared crucial for transport activity but its functional role remains undefined (10, 11).
The objective of this study was to elucidate the individual roles of the TM residues identified as evolutionary type II rate shift sites by analyzing the impact of the SLC11/outgroup reciprocal mutations on Me2+ and H+ uptake kinetics and thermodynamics in vivo and in vitro, by probing the in situ accessibility of targeted sites, and by selecting a tridimensional structural fold obtained by threading that fits our experimental results.
| EXPERIMENTAL PROCEDURES |
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Fluorescent Measurements of H+ Transport in Vivo—Metal-induced intracellular acidification was measured using a pH-dependent ratiometric green fluorescent protein, pHluorin, and cells resuspended at an A600 of 0.2 in 50 mM citrate-phosphate buffer (pH 4.7–5.7) (14). Fluorescence emission (wave-length 520 nm) was measured on a Fluoromax-2 spectrophotometer (Jobin-Yvon, SPEX) after dual excitation at 410 and 470 nm. MntH-dependent intracellular acidification was deduced from [H+] changes post-metal addition and monitored for 1000 s. Energy of activation (Ea) values were deduced from [H+] changes 250 s after addition of 10 µM Cd2+ at temperatures varying from 15 to 37 °C.
Preparation of Right-side Out and Inside Out Membrane Vesicles—E. coli strain G536 (24) lacking several Fe2+ and Mn2+ transport systems (W3110
fecABCDE::kan
zupT::cat
mntH
entC
feoABC) was transformed with derivatives of pBAD24 expressing native or mutant MntH. Individual clones were cultured in LB medium containing ampicillin (100 µg/ml) at 37 °C and 250 rpm until an A600 of 0.6 was reached. MntH expression was induced for 1 h using 0.1% arabinose. Right-side out vesicles (RSOV) were prepared by osmotic lysis (25), except that spheroplasts were lysed in 0.1 M potassium Pi, pH 7.5, washed, and resuspended in 0.1 M Pipes-Mes, pH 7.5. Inside out vesicles (ISOV) were prepared by one passage of the cells (2.5 mg wet weight/ml) through an Aminco French Press at 16,000 p.s.i. in 0.1 M potassium Pi, pH 7.5, buffer (26). RSOV and ISOV were resuspended in 0.1 M Pipes-Mes, pH 7.5, at a concentration of 10–15 mg of protein/ml. The polarity of these preparations was tested by fluorescence spectrophotometry (supplemental Fig. S3) using indicators of (i) changes in 
or
pH resulting from respiration (negative/alkaline or positive/acidic inside, respectively, for RSOV or ISOV), or (ii) topological accessibility of single Cys residues introduced in MntH extramembranous loops formerly assigned to either side of the membrane (14). These Cys mutants (MntH 12TMS-His10) catalyzed Cd2+-induced intracellular H+ uptake (supplemental Fig. 3, E and F).
109Cd2+ Transport Assays—We used Cd2+ as substrate for MntH because it triggers larger intracellular acidification compared with Mn2+, Fe2+, and Co2+ (10). 109Cd (specific activity 60 mCi/µmol; GE Healthcare, Baie d'Urfé, Quebec, Canada) uptake was performed by a quick filtration assay in 0.1 (vesicles preparations) or 0.05 M Pipes-Mes (intact cells), pH 6.5 or 7.5, at 24 °C unless otherwise specified. Samples (0.1 ml) were removed at the indicated times and immediately filtered through 0.45-µm Metricel GN-6 filters (PALL, East Hills, NY; whole cells), 0.75-µm borosilicate GF75 microfiber filters (Advantec MFS Inc., Dublin, CA; RSOV), and 0.22-µm nitrocellulose filters (Whatman, Florham Park, NJ; ISOV). Filters were washed with 5 ml of ice-cold uptake buffer containing 1 mM CdCl2. All experiments were performed at least in triplicate, using protein concentrations of 50 (RSOV), 200 (ISOV), and
700 µg/ml (whole cells, corresponding to an OD420 of 10) as determined by protein assay using a modified Lowry procedure (27). Vesicles were energized by adding 2 mM L-ascorbate and 0.02 mM N-methylphenazonium methyl sulfate (PMS/Asc), 10 mM D-lactate, or 5 mM NADH, for 3.5 min prior to the addition of Cd2+. Ionophores (1 µM valinomycin, 0.1 µM nigericin, and 10 µM carbonyl cyanide m-chlorophenylhydrazone, CCCP) were added 1 min prior to PMS/Asc addition. Ea (28) was measured using whole cells at pH 6.5 during the initial, linear phase of Cd2+ uptake (after 10 s or 1 min) at temperatures varying from 24 to 37 °C. MntH specificity for Mn2+ was verified using varying concentrations of Mn2+ to compete Cd2+ uptake. By fitting data to the Cheng-Prusoff equation, an apparent inhibitory constant, KiMn = 1.2 ± 0.2 µM at pH 6.5, and [S]
K0.5Cd = 2.6 ± 0.5 µM Cd2+, was obtained (29) (supplemental Fig. 1A), consistent with previous studies using 54Mn2+ (13).
Fluorescence Measurements of Membrane Potential (
) in RSOV and ISOV—Fluorescent probes, 3,3'-dipropylthiadicarbocyanine iodide (1 µM) and bis-(1,3-dibutylbarbituric acid) pentamethine oxonol (1 µM), were used to monitor 
changes in energized vesicles as described (30). Fluorescence excitation and emission wavelengths were, respectively, 622 and 670 nm for 3,3'-dipropylthiadicarbocyanine iodide, and 588 and 614 nm for bis-(1,3-dibutylbarbituric acid)pentamethine oxonol. Measurements were performed either in 100 mM Pipes-Mes, 100 mM KCl, pH 7.5 (and 10 mM CaCl2 or MgSO4 in some cases), or 100 mM potassium Pi, 5 mM MgSO4, pH 7.5. MntH electrogenicity was evaluated using RSOV (50 µg/ml proteins) energized with PMS/Asc (2/0.02 mM) and in the presence of 0.1 µM nigericin. Fluorescence changes indicating relative membrane depolarization were recorded for 5 min post-addition of Cd2+. 0.1 µM valinomycin was added finally as internal control.
Site-directed Thiol Fluorescence Labeling—Each MntH 12TMS-His10 Cys derivative conferred in vivo Me2+ sensitivity (supplemental Fig. 4B), consistent with respective data from prior mutagenesis (supplemental Fig. 2) (10), implying that Cys accessibility will reflect the functional structure of native MntH. RSOV (0.5 mg of protein) were labeled by incubation with 0.1 mM fluorescein 5-maleimide (F5M, Vector Laboratories, Burlingame, CA) at 23 °C for 10 min, prior to or after solubilization in detergent. When indicated RSOV were pretreated for 10 min with 0.5 mM 4-acetomido-4'-maleimidylstilbene 2,2'-disulfonic acid, disodium salt (Molecular Probes, Eugene, OR), or 0.5 mM N-ethylmaleimide (NEM) and then washed and resuspended or solubilized before labeling with F5M. ISOV (0.5 mg of proteins) were incubated for 5 min in the presence of 2.5 µM F5M; labeling was stopped by a 15-min incubation in 20 mM NEM. Membranes were solubilized, and the constructs purified as described under supplemental methods before SDS-PAGE (31) and Coomassie or silver nitrate staining (32). Prior to gel staining, F5M fluorescence was measured under a UV lamp equipped with a green filter using an Alpha Imager 3400 (Innotech, San Leandro, CA).
Western Blot Analyses—C-terminal tagged (-c-Myc or -12TMS-His10) MntH variants were immunodetected in membrane preparations or in purified form as described (10) using anti-c-Myc (PerkinElmer Life Sciences) or anti-His (GE Healthcare) monoclonal antibodies.
Homology Modeling—Several approaches that use an alignment to map residues in a query sequence to sites in candidate template crystals structures were tested using the parameters specified by the developers, including Modeler (33), mGenThreader (34), and several others that are proposed on the meta-server LOMETS, including I-TASSER (9, 33, 35). Four sequences representative of the SLC11 family (two prokaryotic MntH and two eukaryotic Nramp) were tested and the results compiled to produce a consensus prediction. The PDB coordinates calculated were used visualize three-dimensional models using the freeware viewer PyMol (60). The root mean square deviation and Z-score of the LeuT models were verified using Combinatorial Extension (36), DaliLite (37), and MArkovian TRAnsition of Structure evolution (38).
| RESULTS |
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MntH Cd2+ uptake activity was drastically reduced for four of the mutants studied (Fig. 1C). Further analyses of MntH Cd2+/H+ symport kinetics and thermodynamics revealed various types of effects (Tables 1 and 2), which can be summarized as: (i) low affinity Me2+ uptake and little H+ transport (Asp34 and Asn37), (ii) reduced Me2+ uptake but significant residual H+ uptake (Asn250, His211), or (iii) slight opposite variations in Cd2+ and H+ uptake (Asn401), and (iv) impaired transporter cycling (Asn37, Asn250, and His211). Individual phenotypes are detailed below.
MntH TMS1 Asp34 Is Essential for Coupling H+ and Cd2+ Uptake—Kinetic analyses of the MntH-D34G mutant revealed dose-dependent Cd2+ uptake, and K0.5Cd values that were increased about 2- and 10-fold compared with MntH-WT at pH 7.5 and 6.5, respectively, but Cd2+-induced H+ uptake was not detected even when using 1 mM Cd2+ (supplemental Fig. 2D). The unique properties of the MntH-D34G mutant, such as K0.5Cd values little affected by the external pH and lack of H+ transport, suggested that exchange of Asp34 uncoupled Cd2+ uptake from H+ influx.
To determine whether a conformational rearrangement was involved we tested the Ea of Cd2+ uptake by MntH-D34G, which was similar to MntH-WT (Fig. 1D). The Ea of H+ uptake could not be measured because no significant activity was detected for any Asp34 variant (supplemental Fig. 2D). This indicated that mutation of Asp34 could directly affect H+ binding versus transporter cycling, which was confirmed in vitro by lack of a Cd2+-induced MntH-dependent variation of 
in right-side out vesicles (see below "Electrogenicity of MntH-dependent Forward Cd2+ Transport" and Fig. 3E).
MntH TMS6 His211 Role in Cd2+ Transport is pH-dependent—The exchange of TMS6 His211 for Tyr had pH-dependent effects on MntH Cd2+ uptake. Compared with MntH-WT, the K0.5Cd value of MntH-H211Y doubled at pH 6.5, but at pH 7.5, Cd2+ uptake levels were indistinguishable from cells lacking a functional MntH (Table 1). At pH 6.5, the MntH-H211Y Vmax value was reduced (Table 1), and the Ea value possibly affected (Fig. 1D). Similar strongly pH-dependent Me2+ uptake activity has been reported for Nramp2 mutation at the homologous site, H267A, which was compensated for by lowering the external pH (41).
To examine whether this SLC11 invariant His residue is crucial for pH-dependent Me2+ binding we measured Cd2+-induced variations in intracellular pH (Table 2, supplemental Fig. 1, B and C). The apparent K0.5 of MntH H211Y was several 100-fold increased at pH 5.3 compared with WT. The Vmax value for H+ accumulation showed that this mutant still catalyzed H+ uptake, although the Ea value of H+ transport was elevated (Fig. 1E). The results thus indicated that replacement of MntH TMS6 His211 alters H+ binding and the catalytic cycle of Cd2+ binding and transport.
MntH Asn37, Asn250, and Asn401 Contribute Indirectly to Cotransport Activity—The MntH Asn250 mutant also showed unique effects compared with MntH-WT: up to an 100-fold increase in the apparent K0.5 value for Cd2+-induced H+ uptake at pH 4.7 and reduced Vmax values (Table 2 and supplemental Fig. 1, B and C); strong reduction in the Vmax values for Cd2+ uptake, especially at pH 7.5 and a lesser increase of K0.5Cd values, mainly at pH 6.5 (Table 1); and elevated Ea values of both Cd2+ and H+ transport (Fig. 1, D and E). Because N250Q exchange was not conservative (compared with N401Q, supplemental Fig. 2) these results indicated a role of Asn250 in transporter cycling.
Although replacement of Asn37 affected Cd2+ and H+ transport kinetics similarly to Asp34 mutation, maybe due to proximity of these sites, important differences were noted: the MntH-N37T mutation did not abrogate Cd2+-induced H+ uptake (supplemental Fig. 2D), whereas the Ea value of Cd2+ transport was elevated (Fig. 1D), and K0.5Cd values remained pH-dependent (Table 1). The MntH Asn37 residue may, similarly to Asn250, take part in conformational changes during the transport cycle.
MntH mutation Asn401 to Thr had less impact on transport kinetics than N37T and N250T exchanges (Fig. 1), consistent with Asn to Gln replacement that was conservative only at site 401 (supplemental Figs. 1 and 2). Main effects were on MntH-N401T Vmax, which was reduced for Cd2+ uptake especially at pH 6.5 (Table 1), but increased
2-fold for Cd2+-induced H+ uptake, independent of the external pH (Table 2, supplemental Fig. 1, B and C). pH-dependent variations of K0.5Cd were not correlated with Cd2+ transport Vmax values. Such effects supported previous observations linking nonconservative mutations of Asn401 to intracellular acidification in the absence of added Cd2+ (10), due to apparently opposite effects on the Vmax values of Me2+ and H+ uptake.
Characterization of MntH-catalyzed Forward Metal Uptake in Vitro—To confirm the uncoupling effect of the MntH D34G mutation observed in vivo we studied Cd2+ transport in vitro using RSOV. ISOV were used for comparison. MntH-dependent 109Cd2+ uptake in 0 trans conditions showed different requirements for RSOV or ISOV preparations (Fig. 2, A and B). Uptake into RSOV was stimulated about 10-fold of the background levels by addition of millimolar amounts of Ca2+ and the respiratory substrate PMS/Asc (42), whereas 10-fold more metal was necessary to obtain about 3-fold stimulation of background uptake in ISOV (Fig. 2, A and B). However, both Cd2+ uptake activities were saturable, temperature-dependent (data not shown), and required an active transporter: mutants at sites thought to interact directly with Cd2+ and H+ showed little uptake in conditions otherwise favorable for MntH-WT (Fig. 2, C and D).
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pH (10-fold variation in [H+]), Cd2+ uptake was increased by adding the H+/K+ ionophore nigericin, which converts
pH into increased 
(43), and it was abrogated using the K+ ionophore valinomycin, which dissipates 
(Fig. 3C). Without external K+, Cd2+ transport still required PMS/Asc and Ca2+ but was not affected by nigericin, slightly stimulated with valinomycin, and the protonophore CCCP abrogated it (data not shown). Thus, MntH forward Me2+ uptake activity is proton-dependent.
In contrast, and contrary to the expected inhibition by 
(positive inside) of a proton-motive force-dependent mechanism of Cd2+ uptake, MntH-dependent activity in ISOV persisted in the presence of 10 mM D-lactate or 5 mM NADH (Fig. 3B) and was indifferent to nigericin, valinomycin, or both as well as up to 100 µM CCCP (Fig. 3D). Also, compared with RSOV, PMS/Asc and Ca2+ induced little stimulation of Cd2+ uptake in ISOV, which was nullified by CCCP (consistent with
90% homogeneous ISOV preparations, supplemental Fig. 3D and data not shown). These data distinguished MntH "reverse" transport from proton-dependent forward transport activity.
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only (negative inside) into RSOV preparations (Fig. 3C) was consistent with in vivo data (supplemental Fig. 4A) using an E. coli
unc strain, unable to convert ATP and the proton-motive force, in which MntH Mn2+ uptake at pH 7.4 (
pH
0) was independent of ATP and abrogated by micromolar amounts of CCCP. These data suggested that MntH forward transport activity, symporting Me2+ and H+, is electrogenic, i.e. it produces charge imbalance across the membrane.
Consequently, MntH activity should contribute directly to modulate 
; using conditions where RSOV are energized with 
only (negative inside), MntH-dependent symport of Me2+ and H+ should in turn reduce 
. Such MntH-dependent charge movement across the membrane was quantified by following Cd2+-induced depolarization of 
. Because addition of 100 µM Cd2+ to RSOV harboring MntH-D34G yielded low level Cd2+ uptake at pH 6.5 (data not shown), this concentration was used to follow the Cd2+-induced variation in 
(less negative inside). Similar depolarization was observed with the MntH-WT and -N401T mutants (Fig. 3E), reflecting electrogenic, non-compensated charge movement across the vesicle membrane. Deficient electrogenicity of MntH-D34G supported the loss of the Cd2+-induced H+ symport in this mutant.
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Strikingly, only two sites were reachable in situ: Cys34 was freely accessible to F5M (Fig. 4A) and Cys211 reacted solely with NEM (Fig. 4, A and B). These results seemed consistent with the Asp34 and His211 respective predicted locations in TMS1 and TMS6 and their distinct direct roles in Me2+/H+ symport. Also, TMS1 Cys37 and TMS7 Cys250 became labeled with F5M after solubilizing MntH (Fig. 4, A and B), supporting possible roles in the transporter motion. TMS11 Cys401 was marginally accessible (Fig. 4, A and B) implying that it participates to tight inter-helical contacts; exchanging Asn401 for a smaller side chain increased cation uptake, whereas a similar sized moiety limited it (e.g. supplemental Fig. 4B and 2, A and C, respectively, Cys and Gln; prior data using Gly and Thr, see Ref. 10). The results of site-directed labeling thus converged with functional data to demonstrate that SLC11-specific residues contribute critically to MntH transport by either binding substrates directly (Asp34, His211) or contributing to inter-helices contacts (Asn37, Asn250, and Asn401).
Three-dimensional mapping of functional sites is crucial to understand catalytic mechanisms. We determined whether known transporter structures could help model a spatial distribution for the SLC11-specific functional sites. Several template structures, e.g. LeuT, glycerol-3-phosphate transporter, EmrD, and chloride channel, were frequently ranked as significant hits with most programs and for each SLC11 sequence tested. However, only the LeuT/SLC6 family structure (44) fully supported our functional and topological data (Fig. 4C and supplemental Fig. 5). Additional predictions obtained using Modeler and either single sequences or groups of sequences representing SLC11 phylotypes as queries produced 16 models, which were all based on the LeuT template, and with scores ranging from 0.01 to 0.76. The similarity of each of these models with the LeuT structure was quantified using DaliLite (37) yielding values in the ranges 44–60.3 (Z-score), 322–439 (aligned residues), 0.8–1.7 (Å, root mean square deviation), and 10–17 (% sequence identity), which indicated that SLC11 transporters may share the same general fold. The model presented (Fig. 4C; supplemental Fig. 5) exhibits little difference with the LeuT/SLC6 structure, with values for root mean square deviations and Z-score of, respectively, 1.07 Å and 7.5 (45) or 1.0 Å and 52.9 (37). This LeuT fold places both Asp34 and His211 in the inner core of the MntH molecule, as parts of extended peptides interrupting TMS1 and TMS6, and lining a water-filled pore. The three Asn37, Asn250, and Asn401 appeared directed toward inter-helix contacts and the outer fence of the model architecture (Fig. 4C and supplemental Fig. 5). Structural modeling of SLC11 evolutionary distinct sites thus corroborates their key functional roles.
| DISCUSSION |
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The TMS1 Asp residue is part of a conserved DPGN motif that has been subjected to mutagenesis in studies using MntH or Nramp2 homologs, which showed loss of Me2+ uptake caused by Gly exchange (11, 47). The carboxyl end of Nramp2 TMS1 and adjacent extra loop were implicated in Me2+ binding and coupling of Me2+ uptake to the proton-motive force (47). MntH scanning mutagenesis revealed that only Pro35 exchange did not abrogate Mn2+ uptake, and MntH-P35G had a marginally affected K0.5Mn (11). Here, the role of the flanking SLC11 family-specific site Asn37 was detailed. Exchange of Asn37 seemed to perturb interactions among TMS rather than between MntH and cations, as demonstrated by inaccessibility to a small soluble compound in situ, impaired Cd2+ and H+ transporter cycling but residual Cd2+-induced H+ transport, and pH dependence of Cd2+ uptake. We deduce that the SLC11 invariant tripeptide (DPG) may bear analogy to a known functional signature for Me2+/+ transport, i.e. ((C/S/T)P(C/H)) that is conserved in the TMS6 of P1B-type ATPases, which pump heavy metal cations using energy provided by ATP hydrolysis (48, 49). The SLC11-invariant Asp and Gly residues in TMS1 could thus contribute to Me2+ binding, the acidic moiety being key for H+-coupled transport.
The His residue in TMS6 was shown previously to regulate Me2+ uptake via Nramp2 and MntH (10, 41). We further showed that low Me2+ uptake persisted with MntH-H211C (supplemental Fig. 4B), similar to the Nramp2 matching mutant H267C (41), and that MntH-H211Y low affinity for Cd2+ did not prevent H+ uptake. It seems thus unlikely that this His residue could either bind Me2+ directly, or simply be part of a relay or channel enabling H+ movement across the membrane (50, 51). Instead, (de)protonation could favor a conformation facilitating Me2+ translocation and transporter cycling; TonB His20 is an example of a TM His moiety required for transport cycling and the energy transduction event (52). The SLC11-specific TMS6 His residue is part of another conserved motif (MPH) (with exceptions in plasmodia, plants, and fungi homologs) not found in the SLC11 phylogenetic outgroup (V(P/G)Y) (10), suggesting by analogy with TMS1 that the TMS6 motif (MPH) may represent another signature for metal transport.
Strikingly, modeling SLC11 homologs on the LeuT/SLC6 structure suggests an internal symmetry (including two domains made of helices 1–5 and 6–10, similarly folded but in inverted orientation with respect to the membrane (53), and thus a possible origin for the motifs in TMS1 and TMS6, which appear central to the model transporter architecture. These two motifs in anti-parallel orientation ((DPG) and ("HPM")) form a pair of extended peptides interrupting TMS1 and TMS6. Similar pairs of discontinuous helices (
-helix-extended peptide-
-helix) constitute a salient feature in five cation transporter structures, and pairs of antiparallel discontinuous TM helices may be part of a fold shared by several cation transporter families (54).
Burying such (DPG) and (HPM) "extended peptides/polar helix termini" elements within the low-dielectric core of the membrane is not energetically favored, partly due to charges, including polar backbone groups not engaged in intra-chain hydrogen bonds. Such elements should be stabilized by interacting with adjacent residues, transported substrates (e.g. dehydrated cations), or by mediating alternate conformation rearrangements (44, 54). Our data indicate that interactions with Me2+ and/or H+ may stabilize SLC11 TMS1 Asp and TMS6 His. Mapping to the LeuT model are other sites of potential divergence between the SLC11 family and outgroup, suggested clustering around these central motifs, (DPG) and (HPM) (supplemental Fig. 5, C and D), and possible inter-helix contacts, which could be considered in future structure/function studies using the present approach. The targeted Asn residues in TMS1, TMS7, and TMS11 affected transport without interacting with cations or being accessible to NEM in situ (Asn37, Asn250, and Asn401). According to the LeuT fold, these residues may be oriented for inter-helix contacts, possibly key for transport cycling, e.g. TMS7 Asn250 and TMS1b Asn37, or velocity (Asn401), because TM Asn residues can drive strongly inter-helix associations (55, 56) or mediate structural motion during ion permeation (57).
Analysis of E. coli MntH activity in vitro yielded surprising results concerning activation of MntH forward Cd2+ transport by millimolar amounts of Ca2+, and reverse Cd2+ transport that appeared passive. Requirement for millimolar Ca2+ in addition to RSOV energization was previously reported to stimulate Mn2+ uptake in E. coli RSOV (42). Because MntH is the sole manganese uptake system known in E. coli laboratory strains, our data may suggest a possible link between MntH transport and external Ca2+, which might be reminiscent of interactions between a DMT1 mutant and Ca2+ (6). Strong asymmetry observed between MntH forward and reverse uptakes supports the proposition that MntH functions as a pump driven by 
, accumulating cytosolic Me2+ against their concentration gradient. Kinetic studies of H+-coupled transport systems have shown that 
regulates H+ binding or uptake, and that H+ coupling increases a transporter affinity for its substrates or provides some thermodynamic force for the translocation step (2). Such a mechanism is widespread in microbes and was conserved in higher eukaryotic systems where an acid microclimate produces a huge proton gradient (e.g. the epithelial brush-border membrane of the proximal intestine, site of uptake by Nramp2 of non-heme dietary iron (58), and the phagosomal lumen in phagocytes that is depleted from Me2+ by Nramp1 (59)). It is thus expected that future work on the E. coli MntH mechanism of the H+-dependent transport will reveal additional structure-function relationships key to the Nramp/SLC11 family.
Evolutionary targeting of sites for biochemical analyses and three-dimensional validation of the results provides a framework to locate distinct TM residues key to the mechanism of the SLC11 membrane transport family. Low levels of sequence identity between SLC11 and SLC6 families (<20%) implies that the "LeuT-like" structural models obtained probably indicate a possibility that different families of cation transporters may share a general fold that could include inverted symmetry and discontinuous TM helices. SLC11 crystals will be required to ultimately validate any predicted model with resolution and accuracy. Nevertheless, the high resolution of the LeuT structure, which was corroborated by extensive biochemical and mutagenesis data, provided a high quality modeling template, and the suggested fit between the deduced architecture and SLC11 transporters topological and functional data imply that the current model holds significant potential for future studies of the SLC11 mechanism of Me2+/H+ symport and investigations of naturally occurring mutants in relation to diseases.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental Figs. S1–S5, Table S1, and supplemental Methods 1 and 2. ![]()
1 To whom correspondence should be addressed: INRS-Institut Armand-Frappier, 531, Bd des prairies, Laval, QC H7V 1B7, Canada. Fax: 450-686-5301; E-mail: mathieu.cellier{at}iaf.inrs.ca.
2 The abbreviations used are: MntH, proton-dependent manganese transporter; F5M, fluorescein 5-maleimide; NEM, N-ethylmaleimide; RSOV, right-side out vesicles; ISOV, inside out vesicles; PMS, methylphenazonium methyl sulfate; Asc, ascorbate; CCCP, carbonyl cyanide m-chlorophenylhydrazone; Nramp, natural resistance-associated macrophage protein; SLC11, solute carrier 11; SLC6, solute carrier 6; TMS, transmembrane segment; LeuT, leucine transporter; EmrD, multidrug transporter EmrD; 
, membrane potential; WT, wild type; Mes, 4-morpholineethanesulfonic acid; Pipes, 1,4-piperazinediethanesulfonic acid. ![]()
| ACKNOWLEDGMENTS |
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