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J. Biol. Chem., Vol. 283, Issue 16, 10287-10296, April 18, 2008
Mechanism and Regulation of the Two-component FMN-dependent Monooxygenase ActVA-ActVB from Streptomyces coelicolor*![]() ¶|| ¶|| ¶||1 2
From the
Received for publication, November 28, 2007 , and in revised form, January 30, 2008.
The ActVA-ActVB system from Streptomyces coelicolor is a two-component flavin-dependent monooxygenase involved in the antibiotic actinorhodin biosynthesis. ActVB is a NADH:flavin oxidoreductase that provides a reduced FMN to ActVA, the monooxygenase that catalyzes the hydroxylation of dihydrokalafungin, the precursor of actinorhodin. In this work, using stopped-flow spectrophotometry, we investigated the mechanism of hydroxylation of dihydrokalafungin catalyzed by ActVA and that of the reduced FMN transfer from ActVB to ActVA. Our results show that the hydroxylation mechanism proceeds with the participation of two different reaction intermediates in ActVA active site. First, a C(4a)-FMN-hydroperoxide species is formed after binding of reduced FMN to the monooxygenase and reaction with O2. This intermediate hydroxylates the substrate and is transformed to a second reaction intermediate, a C(4a)-FMN-hydroxy species. In addition, we demonstrate that reduced FMN can be transferred efficiently from the reductase to the monooxygenase without involving any protein·protein complexes. The rate of transfer of reduced FMN from ActVB to ActVA was found to be controlled by the release of NAD+ from ActVB and was strongly affected by NAD+ concentration, with an IC50 of 40 µM. This control of reduced FMN transfer by NAD+ was associated with the formation of a strong charge·transfer complex between NAD+ and reduced FMN in the active site of ActVB. These results suggest that, in Streptomyces coelicolor, the reductase component ActVB can act as a regulatory component of the monooxygenase activity by controlling the transfer of reduced FMN to the monooxygenase.
The flavin-dependent monooxygenases are important enzymes that are involved in a wide variety of biological reactions. One of their fundamental functions uses their reduced flavins to activate molecular oxygen by generating flavin-hydroperoxide intermediates, the reactive species that oxygenate the substrate. Two different classes of flavin-dependent monooxygenases have been described. The first class comprises the well known single-component flavoprotein monooxygenases, in which within a single polypeptide chain, the flavin cofactor is reduced by NAD(P)H and reacts with O2 to generate the flavin-hydroperoxide species. Some of these flavoproteins have been investigated in great detail, p-hydroxybenzoate hydroxylase being the prototype of this class of flavoprotein monooxygenase (1). More recently, several two-component flavin-dependent monooxygenases, present in prokaryotic cells and involved in a broad range of oxygenation reactions, have been reported. These systems use two different proteins, a reductase for reducing the flavin and an oxygenase for binding the reduced flavin and catalyzing the reaction with O2. Examples of two-component monooxygenases that use reduced FAD (FADred)3 as a cofactor are 4-hydroxyphenylacetate monooxygenase from Escherichia coli (2), phenol hydroxylase from Bacillus thermoglucosidaflurescens (3), and styrene monooxygenase from Pseudomonas fluorescens (4, 5). Two-component flavin-dependent monooxygenases that use reduced FMN (FMNred) include enzymes involved in the biosynthesis of the antibiotic pristinamycin in Streptomyces pristinaespiralis (6, 7), in the utilization of sulfur from aliphatic sulfonates in E. coli (8), and in the desulfurization of fossil fuels by Rhodococcus species (9), as well as the hydroxylation of 4-hydroxyphenylacetate in Acinetobacter baumannii (10). We have been investigating the mechanism of the FMN-dependent two-component enzyme system, ActVA-ActVB, which participates in the last steps of the biosynthesis of the antibiotic actinorhodin in Streptomyces coelicolor (11–13) (Scheme 1).
The first enzyme of the two-component flavin-dependent oxygenases is a NAD(P)H:flavin oxidoreductase that catalyzes the reduction of free oxidized flavins (FAD and/or FMN) by the reduced pyridine nucleotides, NADPH or NADH (3, 14–16). The second enzyme is an oxygenase that binds the resulting free reduced flavin and promotes its reaction with O2 to hydroxylate the substrate (2, 3, 5–10, 17). Therefore, in contrast to the single-component flavin hydroxylases, the two-component systems catalyze the reduction of the flavin and the hydroxylation of the substrate on separate polypeptides. In the biosynthesis of actinorhodin the hydroxylase system consists of the reductase, ActVB, and the oxygenase, ActVA (14, 15, 17). There is now general agreement that the hydroxylation steps of flavin-dependent hydroxylases proceed through the reaction of the reduced flavin with molecular oxygen to generate a flavin C(4a)-hydroperoxide intermediate (18). This is followed by the transfer of an oxygen atom from the peroxide to the substrate.
Catalysis by the two-component flavin-dependent monooxygenases requires that the reduced flavin be transferred from the reductase to the monooxygenase without being oxidized by molecular O2. This would appear to be a very challenging process, because free reduced flavin becomes oxidized quite rapidly in the presence of O2. Such an oxidation must be avoided or the reduction of the flavin and the ensuing hydroxylation reaction would effectively be uncoupled and, instead, NAD(P)H would be consumed to produce H2O2 and superoxide. We have previously demonstrated that with the ActVA-ActVB system from S. coelicolor the transfer of FMNred from the reductase to the oxygenase is thermodynamically favorable (17). Indeed the monooxygenase ActVA binds FMNred with a Kd value of 0.39 µM and FMNox with a Kd value of 20 µM, whereas the reductase ActVB binds FMNox more tightly than FMNred. There is also no evidence for specific binding interactions between the two components that might facilitate a channeling mechanism allowing the flavin to travel from one protein to another within a protein complex. These data suggest that, despite the drawbacks associated with the simultaneous presence of free FMNred and O2, FMNred is probably transferred between the two components by diffusion and rapid binding to the oxygenase during the hydroxylation reaction. In this work, we have determined that FMNred can be transferred very efficiently from the reductase to the monooxygenase without the participation of any protein·protein complexes. In addition, our data show that in the S. coelicolor system the rate of transfer of FMNred from the reductase, ActVB, to the hydroxylase, ActVA, is controlled by the release of NAD+ from ActVB and that the concentration of NAD+ strongly affects this rate. This is manifest by the formation of a strong charge·transfer complex between NAD+ and FMNred in the active site of ActVB.
Materials—NAD+, NADH, and FAD were from Sigma. FMN was prepared by conversion of FAD to FMN with snake venom from Crotalus adamanteus (19). DCPIP and menadione were from Sigma. 5-Deazaflavin (5-deaza-5-carba-riboflavin) was a gift from Dr. Philippe Simon (Grenoble, France). Enantiopure (+)-kalafungin was synthesized by Dr. Rodney Fernandes and provided by Prof. Dr. Reinhard Brückner (Freiberg, Germany) (20). DHK (dihydrokalafungin), the non-lactonic analogue of (+)-kalafungin, was obtained from the reductive treatment of (+)-kalafungin by NaBH4 as described in a previous study (21). A solution containing 40 µM (+)-kalafungin in anaerobic 50 mM Tris-HCl buffer, pH 7.4, was mixed with 7 equivalents of NaBH4. The reaction was allowed to proceed for a few seconds under anaerobic conditions, and the mixture was then opened to air. The formation of DHK was verified by UV-visible spectrophotometry and liquid chromatography-tandem mass spectrometry. Both techniques showed that (+)-kalafungin was efficiently transformed to DHK with a yield of 100% (data not shown). HPAH-C2 from A. baumannii was provided by Dr. Jeerus Sucharitakul (Mahidol University, Thailand). Recombinant ActVA-Orf5 and His-tagged ActVB from S. coelicolor were overexpressed in E. coli and purified as described previously (14, 17).
Anaerobic Procedures and Rapid Reaction Experiments—All reactions were performed in 50 mM Tris-HCl buffer, pH 7.4, at 4 °C. Solutions were made anaerobic in glass tonometers by Rapid kinetics reactions were performed with a Hi-Tech Scientific stopped-flow Model SF-61DX instrument operating either in single or in double mixing mode, and using either a diode array spectrophotometer or a photomultiplier detector. Kinetic traces were analyzed and fitted with KinetAsyst 3 software (Hi-Tech Scientific, Salisbury, UK). Before each experiment, the stopped-flow instrument flow system was made anaerobic by incubating the flow system overnight with an oxygen scrubbing solution consisting of 100 mM PCA and 0.06 unit/ml PCD in potassium phosphate buffer, pH 7.
Reaction of ActVA·FMNred with O2 in the Presence or in the Absence of the Pyronaphthoquinone Substrate DHKred—A solution containing ActVA (50 µM), FMNox (20 µM), deazaflavin (60 nM), EDTA (10 mM), and catalase (50 nM) in 50 mM Tris-HCl buffer, pH 7.4, was made anaerobic in a glass tonometer as described above. FMNox was then photoreduced for 5–10 s using a commercial 1000-watt tungsten-halogen lamp placed
Investigation of the Kinetics of FMNred Transfer—To study the transfer of FMNred from ActVB to the monooxygenase (ActVA or HPAH-C2), the ActVB·FMNred complex was prepared. A solution containing ActVB (85 µM) and FMNox (20 µM) in Tris-HCl buffer, pH 7.4, in a glass tonometer equipped with a cuvette was made anaerobic as described above. The excess ActVB was to assure that most of the FMN was bound. The complex was then reduced by titration with an anaerobic solution of NADH delivered by a gastight Hamilton syringe connected to the tonometer via an Airless Ware fitting. Approximately 20 µM NADH was sufficient to fully reduce the ActVB·FMN complex. This complex was then mixed in the stopped-flow instrument with an equal volume of Tris-HCl buffer containing ActVA (45 µM) and O2 (600 µM), HPAH-C2 from A. baumannii (45 µM) and O2 (600 µM), oxidized DCPIP (20 µM), or oxidized menadione (40 µM). The concentrations given are those in the syringes before mixing. The inhibition of FMNred transfer from ActVB to HPAH-C2 by NAD+ was investigated by a double mixing stopped-flow technique. The ActVB·FMNred· NAD+ complex, prepared as described above (235, 40, and 40 µM of each component, respectively), was first mixed into an aging chamber with a solution containing various concentrations of NAD+ (from 0 to 5 mM). After a 5-s delay to assure that the binding of NAD+ had come to equilibrium, the solution from the first mix was mixed with an equal volume of 50 mM Tris-HCl buffer containing HPAH-C2 (50 µM) and O2 (255 µM), and the FMNred transfer to HPAH-C2 was followed spectrophotometrically at 386 and 700 nm to observe the formation of the C(4a)-FMN-OOH intermediate and the disappearance of the FMNred-to-NAD+ charge· transfer complex.
Reaction of ActVA-FMNred with O2 in the Absence of the Pyronaphthoquinone Substrate and Formation and Decay of the C(4a)-FMN-OOH Intermediate—It has been previously shown that ActVA is able to stabilize a C(4a)-FMN-OOH species within its active site, but the kinetics of its formation and decay were not determined (17, 24). Here, we have investigated the kinetics of the formation and decay of the C(4a)-FMN-OOH intermediate by stopped-flow spectrophotometry at 4 °C, as described under "Experimental Procedures." An anaerobic solution of FMNred (20 µM), containing an excess of ActVA (50 µM) to promote full complex formation (Kd FMNred = 0.39 µM, (17)), was mixed with equal volumes of Tris-HCl buffer solution containing various concentrations of O2. The reaction was monitored by UV-visible spectrophotometry. As shown in Fig. 1A (thick line) the first spectrum recorded at 5 s ([O2] = 595µM after mixing) had a main absorption band at 386 nm. This spectrum is characteristic of a C(4a)-FMN-OOH species, such as those found in other single- and two-component flavin-dependent hydroxylases, including HPAH-C2 from A. baumannii (22) and p-hydroxybenzoate hydroxylase from Pseudomonas aeruginosa (25, 26). Reaction traces monitored at 386 nm were fit to a single exponential model, and the rate constants for formation of the absorbing species were found to be proportional to the O2 concentration (Fig. 1B). The linear plot of kobs at 386 nm versus oxygen concentration yielded a second-order rate constant of k = 2.97 ± 0.06 x 104 M–1 s–1 (Fig. 1C). These data are consistent with a bimolecular reaction between the reduced flavin bound to ActVA and oxygen to form the C(4a)-FMN-OOH intermediate.
The C(4a)-FMN-OOH then slowly converted to FMNox with a half-life of
Interestingly, when free FMNred was mixed with an air-saturated ActVA solution in the stopped-flow apparatus, kinetic traces were the same as those obtained when a preformed ActVA·FMNred complex was mixed with the same concentration of oxygen (data not shown). This implies that almost no spontaneous oxidation of free FMNred by O2 occurred, even though autoxidation of free FMNred by O2 is a reasonably fast process. For example, 40 µM FMNred is oxidized by 240 µM O2, final concentration, in an autocatalytic reaction with a t Reaction of ActVA-FMNred with O2 and Pyronaphthohydroquinone Substrate—The reaction of O2 with FMNred bound to ActVA in the presence of its substrate, reduced dihydrokalafungin (DHKred), was investigated by stopped-flow spectrophotometry. An anaerobic solution containing 80 µM DHKred, 20 µM FMNred, and an excess of ActVA (50 µM, to ensure that most of the FMNred was in complex with ActVA) was mixed with equal volumes of oxygenated Tris-HCl buffer solution containing various amounts of O2. In Fig. 2, the reported data were observed with a final O2 concentration of 595 µM. The reaction was followed at: (i) 365 nm, a wavelength that is useful for monitoring the formation of the C(4a)-FMN-OOH intermediate species (22, 29, 30) and at which DHKred contributes to the absorbance minimally; (ii) 445 nm to monitor the formation of FMNox; and (iii) 520 nm to monitor the formation of the hydroxylated DHKox product (DHKox-OH) (24). In addition, fluorescence emission at 530 nm (excitation at 390 nm) was recorded to follow the formation of C(4a)-FMN-OH (hydroxy-FMN) and FMNox species. For many flavin-dependent hydroxylases, the C(4a)-FMN-OOH intermediate does not exhibit significant fluorescence emission upon excitation at 390 nm, whereas the C(4a)-FMN-OH species is often highly fluorescent (22, 29, 31). The absorbance values at the above mentioned wavelengths are plotted as a function of time in Fig. 2A. These data indicate that the reaction proceeds through at least four successive phases (Fig. 2A and Table 1). Each trace could be fitted by the sum of four exponential processes using a single set of rate constants for data at all wavelengths.
The rate constant k1 for phase 1 was directly dependent on O2 concentration (data not shown), indicating a bimolecular reaction with O2. No FMNox (445 nm trace) and almost no C(4a)-FMN-OH (fluorescence at 530 nm) were observed during this first phase. Thus, the bimolecular rate constant (3.96 ± 0.05 x 104 M–1 s–1) determined from the increase in absorbance at 365 nm is clearly associated with the formation of the C(4a)-FMN-OOH intermediate. This rate constant is only slightly different from that determined in the absence of the DHKred substrate (Fig. 1C, 2.97 ± 0.06 x 104 M–1 s–1). In the subsequent phases, k2, k3, and k4 were found to be independent of O2 concentration (data not shown), indicating that they did not involve direct reactions with O2.
In phase 2, the appearance of fluorescence at 530 nm (with excitation at 390 nm) reached a maximum at Phase 3 is best indicated by the strong increase in absorbance at 445 nm characterized by a rate constant of 0.16 ± 0.02 s–1. This was due to formation of FMNox, which is expected to arise from dehydration of the C(4a)-FMN-OH intermediate. The small decrease of fluorescence with an identical rate constant (0.16 ± 0.02 s–1) likely reflects the smaller fluorescence quantum efficiency of FMNox (with excitation at 390 nm) as compared with that of C(4a)-FMN-OH, as has been shown for other flavin-dependent hydroxylases (29, 31).
Finally, phase 4 was mainly characterized by a slow increase of absorbance at 520 and 450 nm (0.013 ± 0.002 s–1), which most likely represents the oxidation by O2 of the hydroquinone, DHKred-OH, into the quinone, DHKox-OH. This conclusion was also consistent with the spectrum recorded 200 s after mixing (Fig. 2B) that has an additional band extending to 600 nm. This spectrum is similar to that of a mixture of
The kinetic path of hydroxylation of DHKred catalyzed by ActVA is summarized in Scheme 2. One interesting feature of this reaction is that the formation of the C(4a)-FMN-OOH intermediate, which in the presence of O2 forms quickly after FMNred is transferred to the monooxygenase, has very little dependence on the presence of the DHKred substrate. This indicates that the substrate may bind after the hydroperoxide intermediate is formed, as observed with HPAH-C2 (22), cyclohexanone monooxygenase (34), and microsomal flavin monooxygenase (35). FMNred Transfer from ActVB to ActVA—Our previous investigations have shown that transfer of FMNred from the reductase ActVB to the monooxygenase ActVA is thermodynamically favorable (17). To study the kinetics of this transfer reaction, we took advantage of the UV-visible signature of the ActVB·FMNred·NAD+ complex, which has a broad charge·transfer (C–T) band between 550 and 800 nm, as well as the formation of the C(a)-FMN-OOH intermediate that can be monitored at 380 nm. The C–T band originates from the interaction between NAD+ and FMNred in the ActVB active site (14). Our previous studies showed that, under anaerobic conditions, the addition of 1 equivalent of ActVA to the ActVB·FMNred·NAD+ complex resulted in total disappearance of the C–T band, implying that FMNred was transferred from ActVB to ActVA (17).
In Fig. 3, an ActVB·FMNred·NAD+ complex (85, 20, and 20 µM, of each component, respectively) was anaerobically prepared by adding one equivalent of NADH to FMNox in the presence of ActVB. Then, the complex was mixed at 4 °C with an equal volume of solution containing 45 µM ActVA and 600 µM O2 in a stopped-flow spectrophotometer. The UV-visible difference spectra (spectra at various times minus the initial spectrum of the ActVB· FMNred·NAD+ complex; this mode of display makes it easier to view the overall changes) were recorded as a function of time from 7 to 150 ms after mixing. Addition of the aerobic solution of ActVA to the anaerobic solution containing ActVB· FMNred·NAD+ resulted in total disappearance of the broad C–T band within Fig. 3B shows the kinetics of the absorbance changes at 386 nm (formation of C(4a)-FMN-OOH) and at 700 nm (disappearance of the C–T complex ActVB·NAD+·FMNred). Both traces could be fitted to a single exponential model with almost identical rate constants (k386 nm = 4.6 ± 0.1 s–1 and k700 nm = 5.0 ± 0.4 s–1). It can be noted that this rate constant is smaller than that for the formation of the C(4a)-FMN-OOH·ActVA complex from the reaction of free FMNred with O2 in the presence of ActVA (k386 nm = 10.6 ± 0.1 s–1 for the reaction of 10 µM free FMNred mixed with 22.5 µM ActVA and 300 µM O2 final concentrations, Fig. 1 and data not shown). Although these results suggest that, under the experimental conditions of Fig. 3 formation of the C(4a)-FMN-OOH intermediate is rate-limited by the release of FMNred from ActVB, the relatively small difference in rates of these two processes tempers confidence in this conclusion. To further clarify the kinetics of dissociation of FMNred from ActVB, we performed the experiments described below.
The HPAH-C2 monooxygenase from A. baumannii is part of a two-component FMN-dependent monooxygenase similar to ActVA. Recently, it has been shown that under similar conditions to those used for ActVA in the experiment shown in Fig. 1, HPAH-C2 monooxygenase binds free FMNred and reacts with O2 to form a C(4a)-FMN-OOH adduct very rapidly. The rate constant for binding FMNred to HPAH-C2 has been estimated to be >107 M–1 s–1 and the ensuing reaction with O2 occurs with a second-order rate constant of 1.1 106 M–1 s–1 (22). Thus, if HPAH-C2 is reacted with free FMNred in the presence of 300 µM O2, the formation of the C(4a)-FMN-OOH intermediate will occur with a rate constant of 330 s–1, a value 30 times greater than that reported for ActVA. Substitution of HPAH-C2 for ActVA in an experiment such as that in Fig. 3 would clearly distinguish whether the release of FMNred from ActVB is rate-limiting. The experiment shown in Fig. 3 was repeated in the presence of HPAH-C2 monooxygenase (25 µM, final concentration) in place of ActVA. As reported for the experiment with ActVA (Fig. 3), the ActVB·FMNred·NAD+ complex disappeared in parallel with the formation of the C(4a)-FMN-OOH intermediate (data not shown). The kinetics of the absorbance changes at 386 nm (formation of the C(4a)-FMN-OOH species) and at 700 nm (disappearance of the C–T complex ActVB·NAD+·FMNred) could be fitted to a single exponential model, with rate constants (Table 2, k386 nm = 4.7 ± 0.1 s–1 and k700 nm = 3.8 ± 0.1 s–1) nearly identical to those obtained with ActVA (Table 2). These data are consistent with the limiting step for the transfer of FMNred from ActVB to the monooxygenase component being the release of FMNred from the ActVB·NAD+·FMNred complex.
Menadione and DCPIP are two redox dyes known to react very rapidly with reduced free flavin (36). When free FMNred is mixed with two equivalents of either one of these oxidized dyes, the FMNred becomes nearly fully oxidized during the dead time of the stopped-flow experiment (implying that kox > 300 s–1, Table 2). However, when ActVB·FMNred·NAD+ was mixed with either DCPIP or menadione under anaerobic conditions, the FMNred was oxidized with rate constants of 6.2 ± 0.1 s–1 and 6.1 ± 0.1 s–1 for DCPIP and menadione, respectively (Table 2). In addition, the C–T complex (measured at 700 nm) disappeared with rate constants (6.5 ± 0.1 s–1 and 6.3 ± 0.1 s–1 for DCPIP and menadione, respectively, Table 2). These rate constants are >50-fold smaller than those obtained when free FMNred reacted with these dyes (Table 2). As shown in Table 2, the rates of disruption of the charge·transfer complex obtained in the presence of the monooxygenases ActVA or HPAH-C2 and with the two dyes were almost identical. These results suggest that the rate of oxidation of the ActVB·NAD+·FMNred complex by the dyes as well as by the oxygenases is likely to be primarily limited by the release of FMNred from the complex. The slightly greater rates obtained with the dyes compared with those obtained with the two oxygenases can be explained by the dyes reacting with the FMNred before it is fully released from ActVB, whereas the C(4a)-FMN-OOH species can only form after FMNred is completely released and transferred to the oxygenases. Altogether, these data demonstrate that the formation of the C(4a)-FMN-OOH intermediate with the monooxygenases ActVA and HPAH-C2 is limited by the release of FMNred from the ActVB·NAD+·FMNred complex followed by its transfer to the monooxygenase.
Inhibition of FMNred Transfer by NAD+—Previous steady-state kinetics studies had shown that during the ActVB-catalyzed reaction (FMNox + NADH
As shown in Fig. 4, the ActVB·FMNred·NAD+ complex (235, 40, and 40 µM of the respective components) was anaerobically mixed with equal volumes of solutions containing various amounts of NAD+. After 5 s (to allow the NAD+ binding to come to equilibrium), this solution was mixed with an equal volume of an aerobic solution of HPAH-C2 (50 µM HPAH-C2 and 255 µM O2), and the absorbance values at 386 and 700 nm of the final mixture were followed as a function of time (Fig. 4, A and B, respectively). Addition of increasing amounts of NAD+ resulted in decreases of the rates of both the loss of the C–T complex (700 nm) and the formation of C(4a)-FMN-OOH (386 nm). For a given NAD+ concentration, traces at both 386 and 700 nm could be fitted with a single exponential function with almost identical rate constants (Fig. 4, A and B). As shown in Fig. 4C, a plot of the rate constants obtained from the traces at 386 and 700 nm versus NAD+ concentration indicated that the presence of an excess of NAD+ could totally inhibit the transfer of FMNred from ActVB to HPAH-C2 as well as the formation of the C(4a)-FMN-OOH species. The IC50 concentration for inhibition by NAD+ was determined to be 40 µM.
In this work, we have carried out a detailed kinetic study of the reaction of the two-component FMN-dependent monooxygenase, ActVA-ActVB from S. coelicolor, by stopped-flow spectrophotometric methods to test our earlier propositions on the reaction mechanism of ActVA-ActVB system (17, 24) and to gain insights into its mechanism of regulation. Recent characterization of several members of the two-component flavin-dependent monooxygenase family has revealed similarities to but also some specific differences from the well studied single component flavoprotein monooxygenase family, such as p-hydroxybenzoate hydroxylase. In both types of systems, the monooxygenase activates the oxygen molecule by forming a C(4a)-flavin hydroperoxide intermediate that delivers an oxygen atom to the substrate. In contrast to the single component hydroxylases, the reduction of the flavin in the two-component flavin-dependent monooxygenase systems is catalyzed by a separate NADH oxidoreductase, and the resultant reduced flavin must then be delivered to the oxygenase. Thus, the mechanism by which the reduced flavin cofactor is transferred from the reductase to the monooxygenase in the presence of O2 represents one of the most challenging aspects of these systems. Here we have presented several experiments that elucidate the essential features of the mechanism of transfer of FMNred between ActVB and ActVA. Compared with the few studies recently published on other two-component FMN-dependent monooxygenase systems, our results highlight a unique property of the ActVA-ActVB system, namely that the overall hydroxylase reaction is partially limited by the release of FMNred from the reductase, and this release is regulated by the dissociation rate of the charge transfer complex between NAD+ and FMNred. Large concentrations of NAD+, a product of the flavin reductase reaction, can greatly reduce the rate of FMNred release. Moreover, we show that no complexes between ActVB and ActVA are required for efficient transfer of FMNred between the two.
At first, we studied the monooxygenase-dependent reaction in the absence of the reductase component ActVB and under conditions where the ActVA·FMNred·DHKred complex was formed before it reacts with O2. We showed that the hydroxylation mechanism proceeds with the participation of two different reaction intermediates, a C(4a)-FMN-OOH that precedes, and a C(4a)-FMN-OH species that accompanies the formation of the reaction product, DHKred-OH (Fig. 2). The C(4a)-FMN-OOH intermediate, characterized by a typical single absorbance band centered at 386 nm, results from the bimolecular reaction of the ActVA·FMNred complex with O2. This step occurs with a rate constant of In the presence of DHKred, the C(4a)-FMN-OOH intermediate in the ActVA active site converted to a C(4a)-FMN-OH species, with a rate constant of 1.48 s–1. Formation of the C(4a)-FMN-OH species results from transfer of the distal oxygen of C(4a)-FMN-OOH to the substrate, so that hydroxylation of DHKred to give DHKred-OH almost certainly occurred during that phase. In the subsequent step, the dehydration of the C(4a)-FMN-OH intermediate to form FMNox was observed at a rate of 0.16 s–1 (Fig. 2 and Scheme 2). The mechanism of DHKred hydroxylation catalyzed by ActVA with participation of the two reaction intermediates demonstrated in this study (Scheme 2) appears to be quite similar to that recently determined for the HPAH-C2 component from A. baumannii (22), as well as that proposed for several single component hydroxylases (1, 18, 25, 28, 34, 35). These results reveal that, despite a rather low sequence identity between ActVA and HPAH-C2 (23% identities), the monooxygenase components in the two-component flavin-dependent monooxygenase family use similar chemical mechanisms of hydroxylation.
In the absence of the substrate, the C(4a)-FMN-OOH intermediate forms rapidly (
Because in two-component FMN-dependent monooxygenases the reduction of the flavin takes place in a protein separate from the monooxygenase, FMNred must be transferred from the reductase to the monooxygenase in the presence of O2 without being oxidized unproductively. This represents a rather challenging process. Auto-oxidation of FMNred can be toxic to the cell, because it produces the harmful
First, we showed that ActVA binds free FMNred rapidly enough to prevent auto-oxidation of free FMNred. Bruice and colleagues have determined that the initial rate of reaction of O2 with free FMNred occurs at 250 M–1 s–1 (40). Thus, in the presence of 200 µM O2, this initial rate should be 0.05 s–1 and, even considering the ensuing autocatalytic oxidation process known for such reactions (28, 32, 40), very little net oxidation of free FMNred will occur within the first 100 ms (27). The formation of the C(4a)-FMN-OOH intermediate (Fig. 1C) occurs at a rate of 5.9 s–1 (t
This fast binding of FMNred to ActVA represents one of the key catalytic features of these systems where reduction of the flavin and activation of O2 occur in two different polypeptides. In addition to avoid uncoupling reactions during FMNred transfer, this fast binding of FMNred to ActVA also allows the rationalization of why the formation of a complex between the reductase and the monooxygenase is not required for efficient oxygenation reactions. Second, we demonstrated that dissociation of NAD+ from ActVB limits the release and transfer of FMNred from the reductase ActVB to the monooxygenase ActVA. We showed that the dissociation of FMNred from ActVB is tightly regulated by NAD+, which must dissociate before FMNred can be released in the rate-limiting step. A stable C–T complex between FMNred and NAD+ within the active site of ActVB limits the dissociation rate of NAD+ (Scheme 3). Accordingly, when the kinetics of the FMNred transfer between ActVB and ActVA was studied in the presence of increasing amounts of NAD+, a strong inhibition of the transfer of FMNred to ActVA was observed. An IC50 for NAD+ of 40 µM was determined, and the inhibition of the FMNred transfer was almost complete in the presence of 1 mM NAD+. Therefore in S. coelicolor, ActVB, the reductase component can act as a regulatory component of the monooxygenase activity by controlling the transfer of the FMNred cofactor to the monooxygenase. Earlier steady-state kinetics studies showing that during ActVB catalysis, after the reduction of FMNox by NADH via hydride transfer, the NAD+ product is released before FMNred from the active site, in an ordered sequential mechanism (14). This confirms the notion that FMNred cannot dissociate from the ActVB active site when NAD+ is bound. Then, according to Le Chatelier's principle, an increase of NAD+ concentration is likely to promote the formation of ActVB·FMNred·NAD+ complex and thereby prevent the release of free FMNred. This is consistent with the experiments presented above showing strong inhibition of the transfer of FMNred from ActVB to ActVA by NAD+ (Scheme 3). Control of the monooxygenase activity by NAD+ is unprecedented in the two-component flavin-dependent monooxygenase family. However, in most studies, high concentrations of NAD+ were not present in reaction mixtures. Furthermore, few systems share with ActVB the observable rather stable flavinred·NAD+ charge·transfer complex. PheA2, the reductase of a two-component phenol hydroxylase from Bacillus thermoglucosidasius, is one such example (3), and it is possible that similar control of the activity by NAD+ also occurs in that case. Crystal structures show that NAD+ binds directly over the FADred in a position that is ideal for charge·transfer interactions (41). Recently, it was proposed that the activity of the monooxygenase component in the A. baumannii system was limited by the transfer of FMNred from the reductase, HPAH-C1, to the monooxygenase, HPAH-C2 (27). Furthermore, HPA, the monooxygenase substrate, was shown to function as an effector of HPAH-C1 for both FMN reduction and FMNred release (19, 27). Thus, as in the case of the ActVA-ActVB system, HPAH-C1, the reductase component, is likely to regulate the overall monooxygenase activity. However, in that case the effector is the substrate of the monooxygenase, HPA, whereas in ActVA-ActVB system it is NAD+, the product of the reductase. Interestingly, it was also previously suggested that the oxygenases of the ActVA-ActVB system (24) and the 4-hydroxyphenylacetate hydroxylase (42) systems could be endowed with a regulatory function with respect to their reductases. In the absence of substrate, ActVA, traps free FMNred and converts it to a stable C(4a)-FMN-OOH intermediate. The consequence is that the cellular content of free FMN can become depleted, resulting in a shutdown of the reductase component activity. As highlighted by this work, the regulatory role of ActVB that is dependent on the intracellular concentration of NAD+ adds another important piece to the puzzle of the dynamic regulation of the ActVA-ActVB monooxygenase activity in a cellular context. It might allow coordination of the production of the DHKred-OH (and consequently the formation of the actinorhodin) to the energetic state of the cell, as determined by the NADH/NAD+ ratio. When this ratio is low in cells depleted of NADH, the FMNred would remain bound to the reductase component, preventing further oxidation of NADH and leading to the arrest of the hydroxylase activity. It therefore seems that for the two-component monooxygenase systems there is a mutual regulation mechanism allowing the interpretation of different cellular signals for rapidly tuning the activities of each partner according to the demand and the status of the cell. In the case of the ActVA-ActVB system, ActVA could be perceived as the sensor of the intracellular concentration of DHK, whereas ActVB could be a sensor of the cellular energetic level indicated the NADH/NAD+ ratio. Finally, the results on the two-component flavin-dependent systems from A. baumannii (27) and S. coelicolor (Refs. 17 and 24 and this work) reveal that free diffusion of FMNred between two components in the presence of O2 can be very efficient for supporting monooxygenation reactions. It is clear that single component flavin-dependent monooxygenases can coordinate and carry out both reduction of the flavin and hydroxylation of substrates. Therefore, the advantage of a system using separate reductases and a monooxygenases might be questioned. Because flavin reduction and oxygen-dependent reactions have very different requirements that are difficult to fulfill with a single polypeptide, dividing the tasks by using two different enzymes is a reasonable strategy to alleviate this challenge. In the case of the single component flavoprotein hydroxylases, coordinated dynamics between two different conformations that effectively provides two "active sites" has been shown to be important for dealing with this challenge (1, 18). This coordination is usually linked to the substrate of the enzyme, so that adaptation to new substrates to trigger this dynamic dance of catalysis can be quite involved and complicated. Therefore, the two-component monooxygenase organization might represent an evolutionary advantage for quickly adapting to the metabolism of new substrates. The reductase and the monooxygenase polypeptides can acquire new complementary properties individually without modifying the structural requirements of the other component. This strategy more readily allows for variations to adapt to the hydroxylation of a broad range of substrates, as well as to different regulatory profiles. As pointed out above, even though the hydroxylation reactions occur with similar reaction mechanisms, the regulatory processes of the monooxygenase activity at the level of the reductase component in the case of the A. baumannii and S. coelicolor appear to be very different. Although such regulatory processes have not yet been explored for other two-component flavin monooxygenase systems, one might expect to find similar as well as new regulatory schemes for other systems. Consistent with this notion is the realization that two-component systems are continually being shown to be involved in the oxidation of an ever broader range of substrates.
* This work was supported by National Institutes of Health Grant GM64711 (to D. P. B.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 1 To whom correspondence may be addressed. Tel.: 33-4-38-78-91-09; Fax: 33-4-38-78-91-24; E-mail: vniviere{at}cea.fr. 2 To whom correspondence may be addressed. Tel.: 734-764-9582; Fax: 734-764-3509; E-mail: dballou{at}umich.edu.
3 The abbreviations used are: FADred, reduced FAD; FMNred, reduced FMN; C(4a)-FMN-OOH, FMN C(4a)-hydroperoxide; DHKox, dihydrokalafungin quinone form; DHKred, dihydrokalafungin dihydroquinone form; DHKred-OH, hydroxylated dihydrokalafungin dihydroquinone; HPAH-C2, 4-hydroxyphenylacetate 3-hydroxylase; HPAH-C1, 4-hydroxyphenylacetate 3-hydroxylase reductase component; DCPIP, 2,6-dichlorophenolindophenol; PCA, protocatechuate; PCD, protocatechuate dioxygenase; C(4a)-FMN-OH, FMN C4(a)-hydroxy.
We thank Dr. Jeerus Sucharitakul for providing HPAH-C2 from A. baumannii, Prof. Dr. Reinhard Brückner and Dr. Rodney Fernandes for providing enantiopure (+)-kalafungin, and L. David Arscott, Dr. Sumita Chakraborty, and Dr. Mike Tarasev for fruitful discussions and technical assistance.
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