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J. Biol. Chem., Vol. 283, Issue 23, 15878-15883, June 6, 2008
MicroRNA-210 Modulates Endothelial Cell Response to Hypoxia and Inhibits the Receptor Tyrosine Kinase Ligand Ephrin-A3*
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| ABSTRACT |
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| INTRODUCTION |
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Little is known about the role played by microRNAs (miRNAs) in EC response to hypoxia (4). miRNAs are 21–23-nucleotide RNA molecules that regulate the stability or the translational efficiency of target messenger RNAs (5, 6). The biogenesis of miRNAs begins with a primary transcript, termed the pri-miRNA, and the combined action of Drosha and Dicer ribonucleases generates the mature miRNA species. This product is loaded into the RNA-induced silencing complex, where it mediates the translational inhibition of target mRNA, albeit the opposite effect has been described as well (7). miRNAs have diverse functions, including the regulation of cellular differentiation, proliferation, and apoptosis (5). Although it is clear that miRNAs have essential functions in mammalian biology, few miRNA genes have been functionally linked to specific cellular pathways. In this study, we show that miR-210 is a key player of EC response to low oxygen tension and identify Ephrin-A3 as a relevant target of miR-210 in hypoxic conditions.
| EXPERIMENTAL PROCEDURES |
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miRNA and mRNA Quantification—Total RNA was extracted using TRIzol (Invitrogen). Small RNA and mRNA fractions were enriched using the PureLink miRNA isolation kit and Micro-to-Midi isolation kit (Invitrogen), respectively, according to the manufacturer's instructions. miRNA levels were analyzed using the TaqMan real-time PCR (qPCR) method (1 ng/assay) and quantified with the ABI Prism 7000 SDS (Applied Biosystems). Primers for 157 miRNA, 28 positive and negative controls, and the reagents for reverse transcriptase and qPCR reactions were all obtained from Applied Biosystems. Relative expression was calculated using the comparative Ct method (2-[
][
]Ct) (8). Different samples were normalized to miR-16 expression. For miRNA profiling, miRNAs were assayed in a 96-well format, and samples were also normalized to the median Ct value, obtaining almost identical results. mRNAs levels were analyzed using the SYBR-GREEN qPCR method (1–3 µg/assay, Ambion, see supplemental materials for details). Northern blottings are described in the supplemental materials.
Small Interfering RNA-mediated Gene Silencing—Small interfering RNAs targeting HIF1
, HIF2
, or a scramble sequence (Santa Cruz Biotechnology) were transfected into HUVEC, according to the manufacturer's instruction (see the supplemental materials for details).
miRNA Down-modulation and Overexpression—Locked Nucleic Acid oligonucleotides against miR-210 or a control scramble sequence (Exiqon) were transfected by small interfering RNA transfection reagent (Santa Cruz Biotechnology) in 40% confluent HUVEC (4 x 103/cm2) at the final concentration of 40 nM. After 16 h, cells were re-fed with fresh medium, and experiments were performed 24 h later. Alternatively, cells were incubated with fresh medium for 2 h and then shifted to hypoxic conditions. miRIDIAN miR-210 Mimic or a control scramble sequence (Dharmacon) were transfected using the same protocol. To obtain stable miR-210-overexpressing cells, HUVEC were infected by retroviral vectors bearing pre-miR210 sequence (see the supplemental materials).
miRNAs Target Prediction—Bioinformatic prediction of target genes and miRNA binding sites was performed using four different programs: MiRanda (version 2005), TargetScan (version 3.1), Sanger MirBase (version 4), and PicTar (version 2006) (9–11). Only common targets were considered for experimental analysis.
Additional Information—See the supplemental materials for information on apoptosis, cell cycle analysis, adenoviral infection, capillary-like formation assay, chemotaxis, immunofluorescence, reporter construct generation and luciferase assay.
Statistical Analysis—Variables were analyzed by both Student's t test and one-way analysis of variance and a of p
0.05 was deemed statistically significant. Values are expressed as ±standard error (S.E.).
| RESULTS |
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When miR-210 regulation by hypoxia was further investigated, it was found that its activation was inversely proportional to O2 tension (Fig. S3A). Moreover, upon HUVEC reoxygenation after 24 h of hypoxia, miR-210 levels remained high for the next 8 h and slowly declined thereafter, indicating the maintenance of this adaptive response (Fig. 1A). Finally, miR-210 induction by hypoxia was confirmed by northern blotting (Fig. 1B).
Hypoxia is associated to increased oxidative stress and acidosis (12–14). Thus, it was assessed whether either oxidative stress or acidification in the absence of hypoxia were sufficient to induce miR-210 positive modulation (Fig. S3B). We found that HUVEC exposure to 400 µM H2O2 for 8 and 24 h did not induce miR-210 modulation; similarly, cell culture at both pH 6.6 and pH 7.0 for 24 and 48 h did not increase miR-210. In keeping with these data, a buffered medium that prevented hypoxia-induced acidosis (15) did not inhibit miR-210 activation by hypoxia. Finally, we found that glucose supplementation did not prevent miR-210 induction by hypoxia (Fig. S3C) and that this event was not endothelium-specific (Fig. S4).
Many hypoxia effects are mediated by HIF transcription factor (1–3). To analyze the role of HIF in the induction of miR-210 by hypoxia in EC, the expression of HIF1
and HIF2
was knocked down by the transfection of specific small interfering RNAs. Although the knock down of both HIF isoforms was highly effective (Fig. S5, A and B), only HIF1
RNA interference decreased the induction of miR-210 by hypoxia significantly (Fig. S5C). In keeping with this observation, HIF1
overexpression was sufficient to induce miR-210 expression in the absence of hypoxia (Fig. S5, D and E).
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is necessary and sufficient for miR-210 activation. miR-210 Expression Stimulates Capillary-like Formation and Cell Migration—One main feature of hypoxia is the stimulation of angiogenesis (3). Several aspects of angiogenesis can be studied in vitro, taking advantage of the ability of EC to form capillary-like structures once plated on Matrigel or other extracellular components (16). To this aim, HUVEC were first exposed to 24 h of hypoxia and, afterward, their ability to form capillary-like structures in low growth factor-containing medium was assessed. In keeping with previous reports (17), hypoxia preconditioning significantly increased tubulogenesis (Fig. 2, A and B). To determine whether this event was, at least in part, dependent on miR-210 activation, HUVEC were transfected with a miR-210 complementary Locked Nucleic Acid (anti-miR-210) that binds with high affinity and specificity to the complementary miRNA, inactivating its function. Fig. 2, A and B, show that 24 h of miR-210 blocking greatly decreased the ability of HUVEC to form capillary-like structures, both in cells exposed to hypoxia and in control cells.
To assess whether miR-210 induction affected capillary-like structure formation in the absence of hypoxia, HUVEC overexpressing pre-miR-210 were generated, yielding a population that expressed mature miR-210 levels comparable with these observed in hypoxic cells (Fig. 2C). We found that miR-210 overexpression significantly increased capillary-like formation when HUVEC were plated in low growth factor medium (Fig. 2, D and E).
EC migration is a crucial event in the angiogenic process (3). Thus, we assessed whether the modulation of miR-210 expression affected VEGF-induced chemotaxis. To this aim, HUVEC were transfected with anti-miR-210, and then their ability to migrate in response to VEGF was assayed. Fig. 3, A and B, show that miR-210 blockade significantly decreased VEGF-driven chemotaxis. Conversely, miR-210 up-regulation to levels similar to these induced by hypoxia significantly increased HUVEC ability to migrate in response to VEGF (Fig. 3, C and D).
Finally, to investigate the relevance of miR-210 action in the hypoxia-activated gene expression pattern, the mRNA levels of 11 hypoxia target genes were measured both in HUVEC exposed to hypoxia and in cells overexpressing miR-210 in normoxic conditions (Fig. S6). Although hypoxia up-regulated the expression of all 11 genes, miR-210 did not affect their levels. We concluded that miR-210 expression does not seem to affect the global gene expression response to hypoxia by HUVEC.
miR-210 Levels Modulate EC Survival—It was examined whether miR-210 induction affected EC proliferation. To address this issue, we compared growth curves of HUVEC transduced with retroviral vectors expressing miR-210 or with backbone vector alone, in the presence or absence of hypoxia. It was found that miR-210 expression did not affect cell number significantly both in normoxic and in hypoxic conditions (Fig. S7A). Using a reciprocal approach, HUVEC were transfected with anti-miR-210, and cells were counted. We found that 24 h of miR-210 blocking decreased HUVEC proliferation even in normoxic cells and that exposure to hypoxia further decreased EC number (Fig. S7B). This demise was, at least in part, due to apoptotic cell death since apoptotic DNA fragmentation was increased by anti-miR-210 transfection (Fig. S7C). Similar data were obtained by a terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling assay (TUNEL, not shown). Conversely, when DNA synthesis was measured, we found that anti-miR-210 only minimally affected bromodeoxyuridine incorporation rate (Fig. S7D).
Hypoxia Down-modulates Ephrin-A3 via miR-210—To further corroborate the biological relevance of miR-210 regulation in cell response to hypoxia, an in silico search of potential targets was performed using PicTar, miRANDA, Sanger MirBase, and Targetscan algorithms (Table S3) (9–11). One of the common targets of these software programs was Ephrin-A3 (EFNA3). Given the crucial role of Ephrins in the development of the cardiovascular system and in vascular remodeling (18), we decided to validate this target prediction. To this aim, HUVEC were exposed to hypoxia for 24 and 48 h, and EFNA3 was detected by semiquantitative immunofluorescence. Fig. 4A and Fig. S8A show that although EFNA3 was readily detectable in normoxic cells, its expression decreased to almost undetectable levels following hypoxia exposure. This down-modulation was not due to decreased mRNA levels since measurements by qPCR displayed an unexpected increase of EFNA3 mRNA (Fig. S8B). Although EFNA3 regulation clearly needs further investigation, we can conclude that EFNA3 is post-transcriptionally down-modulated by hypoxia.
Then, it was assessed whether EFNA3 down-modulation was indeed due to increased miR-210 levels. To address this issue, HUVEC were transfected with anti-miR-210 and exposed to hypoxia. Fig. 4B shows that miR-210 blocking completely prevented EFNA3 decrease.
Afterward, it was investigated whether miR-210 up-regulation in the absence of hypoxia regulated EFNA3 levels. We found that EFNA3 protein staining was strongly diminished in miR-210-overexpressing cells (Fig. 4C) in the absence of EFNA3 mRNA regulation (Fig. S8C). Taken together, these data establish a cause-and-effect relationship between mRNA-210 up-regulation and EFNA3 down-modulation by hypoxia.
To investigate whether miR-210 directly regulated EFNA3 expression, an assay was set up in which the 3'-UTR of the EFNA3 gene was inserted downstream of a luciferase open reading frame (pLUC_24–926, Fig. 5A). Alternatively, to eliminate the potential interference of other miRNA binding sites, only the putative miR-210 target site and the immediately surrounding sequences were cloned (pLUC_768–822). As control, we deleted the sequence complementary to miR-210 seed sequence in this latter construct (pLUC_control). The different luciferase constructs were transfected into U2OS cells with a plasmid carrying a constitutive expression cassette for miR-210 or for a control sequence. U2OS were chosen for their high efficiency of transfection. A significant negative effect on luciferase activity was observed in both constructs bearing an intact miR-210 binding site when compared with the control (Fig. 5B). Likewise, endogenous levels of miR-210 induced by hypoxia were sufficient to repress pLUC_24–926 and pLUC_768–822 reporter constructs, whereas pLUC-control was unaffected (Fig. 5C). We concluded that EFNA3 is a direct target of miR-210.
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) and therefore cannot be targeted by miR-210. EFNA3
was expressed using a retroviral vector, whereas miR-210 was transfected as mature sequence. Fig. 6A shows that EFNA3
expression completely prevented miR-210-induced increase of capillary-like structures. Indeed, the simultaneous expression of miR-210 and EFNA3
decreased tubulogenesis below control levels, whereas EFNA3
expression had no effect per se. We found that the same was true also in hypoxia-stimulated cells, therefore, in the absence of miR-210 overexpression. Fig. 6B shows that the expression of EFNA3
prevented hypoxia-induced increase of EC tubulogenesis and that the level of capillary-like structures was below control. Then, we assayed whether EFNA3 inhibition played a role in miR-210 stimulation of EC chemotaxis as well. Fig. 6C shows that although EFNA3
expression did not affect EC chemotaxis in response to VEGF, miR-210 and EFNA3
co-expression inhibited it completely. Likewise, the expression of EFNA3
prevented the increase in VEGF-driven chemotaxis induced by hypoxia (Fig. 6D).
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| DISCUSSION |
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Evidence was provided that miR-210 up-regulation in normoxic conditions increases EC tubulogenesis and migration, whereas miR-210 blockade in the presence of hypoxia decreases capillary-like formation, EC migration, and EC survival and induces apoptosis. In keeping with this latter finding, it has been shown that miR-210 inhibition activates caspases (19, 25). One may speculate that the inhibitory effects on migration and tubulogenesis are mediated by apoptosis. Although this is a very likely explanation, additional mechanisms may play a role as well. Indeed, both cell survival decrease and apoptosis induced by anti-miR-210 transfection were only partial, whereas the inhibition of tubulogenesis was almost complete. Moreover, anti-miR-210 transfected cells migrated spontaneously, thus exhibiting a behavior of living cells. The specific effect of miR-210 blockade was to decrease their ability to enhance their migration in response to VEGF.
One main hurdle that has limited the interpretation of many miRNA profiling studies is the difficulty of identifying miRNA targets (10, 11). Indeed, the identity of only 102 targets has been experimentally proven in humans to date (as shown by the DIANA TarBase data base). To find genes directly regulated by miR-210, a very stringent strategy was adopted using four target prediction software programs and dismissing targets that were not identified by at least three algorithms. Four lines of evidence indicate that EFNA3 is a miR-210 target. 1) miR-210 overexpression induced the down-modulation of EFNA3 protein but not of EFNA3 mRNA. 2) Hypoxia induced EFNA3 protein demise, whereas EFNA3 mRNA was paradoxically increased. 3) miR-210 blocking by complementary Locked Nucleic Acid strategy prevented EFNA3 down-modulation induced by hypoxia. 4) EFNA3 3'-UTR containing a miR-210 binding sequence decreased the expression of a reporter luciferase gene upon hypoxia or miR-210 ectopic expression. Although all these evidences establish that miR-210 regulates EFNA3 expression directly, it is still possible that indirect mechanisms may increase the potency of miR-210 action.
Ephrin ligands and their Eph receptors have been shown to play a crucial role in the development of the cardiovascular system and in vascular remodeling (18). Specifically, numerous studies have shown the importance of EFNA1/EphA2 interaction in the regulation of angiogenesis and VEGF signaling (18, 26). Although the specific role of EFNA3 in the regulation of angiogenesis is still unknown, EphA2 has been shown to bind EFNA3 as well as EFNA1 (27). We provided evidence that EFNA3 down-modulation is a necessary event of miR-210-mediated stimulation of capillary-like formation and EC chemotaxis in response to VEGF. Thus, it is tempting to speculate that miR-210-dependent down-modulation of EFNA3 expression may contribute to modulate the angiogenic response to ischemia. We can conclude that although further studies are needed, the modulation of miR-210 expression and/or activity may be a viable strategy to control angiogenesis, either positively or negatively.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental text, three supplemental tables, and eight supplemental figures. ![]()
1 To whom correspondence should be addressed. Tel.: 39-06-6646-2431; Fax: 39-06-6646-2430; E-mail: f.martelli{at}idi.it.
2 The abbreviations used are: EC, endothelial cell; HUVEC, human umbilical vein endothelial cells; miRNA, microRNA; qPCR, real-time PCR; pSUPER, p-SUPER.retro.puro vector; EFNA3, ephrin-A3; anti-miR-210, miR-210 complementary locked nucleic acid; VEGF, vascular endothelial growth factor; UTR, untranslated region. ![]()
3 P. Fasanaro, Y. D'Alessandra, M. C. Capogrossi, and F. Martelli, unpublished. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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