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Originally published In Press as doi:10.1074/jbc.M705954200 on May 14, 2008
J. Biol. Chem., Vol. 283, Issue 28, 19283-19292, July 11, 2008
Phosphoinositides Suppress -Secretase in Both the Detergent-soluble and -insoluble States*
Satoko Osawa 1,
Satoru Funamoto 2,
Mika Nobuhara ,
Satoko Wada-Kakuda 3,
Masafumi Shimojo¶,
Sosuke Yagishita||, and
Yasuo Ihara
From the
Department of Neuropathology, Faculty of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan, the Department of Neuropathology, Faculty of Life and Medical Sciences, Doshisha University, Kyotanabe, Kyoto610-0394, Japan, the ¶Laboratory for Alzheimer's Disease, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan, and the ||Department of Life Science, Graduate School of Arts and Science, The University of Tokyo, Tokyo 153-8902, Japan
Received for publication, July 20, 2007
, and in revised form, May 5, 2008.
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ABSTRACT
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-Secretase is an aspartic protease that hydrolyzes type I membrane proteins within the hydrophobic environment of the lipid bilayer. Using the CHAPSO-solubilized -secretase assay system, we previously found that -secretase activity was sensitive to the concentrations of detergent and phosphatidylcholine. This strongly suggests that the composition of the lipid bilayer has a significant impact on the activity of -secretase. Recently, level of secreted β-amyloid protein was reported to be attenuated by increasing levels of phosphatidylinositol 4,5-diphosphate (PI(4,5)P2) in cultured cells. However, it is not clear whether PI(4,5)P2 has a direct effect on -secretase activity. In this study, we found that phosphoinositides directly inhibited CHAPSO-solubilized -secretase activity. Interestingly, neither phosphatidylinositol nor inositol triphosphate altered -secretase activity. PI(4,5)P2 was also found to inhibit -secretase activity in CHAPSO-insoluble membrane microdomains (rafts). Kinetic analysis of β-amyloid protein production in the presence of PI(4,5)P2 suggested a competitive inhibition. Even though phosphoinositides are minor phospholipids of the membrane, the concentration of PI(4,5)P2 within the intact membrane has been reported to be in the range of 4–8 mM. The presence of PI(4,5)P2-rich rafts in the membrane has been reported in a range of cell types. Furthermore, -secretase is enriched in rafts. Taking these data together, we propose that phosphoinositides potentially regulate -secretase activity by suppressing its association with the substrate.
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INTRODUCTION
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Intramembrane proteolysis is an enigmatic event that occurs in the hydrophobic environment of the lipid bilayer. Thus far, three classes of intramembrane proteases have been identified as being involved in crucial biological processes, including cholesterol/fatty acid synthesis, epidermal growth factor receptor signaling, signal peptide processing, and type I membrane protein cleavage (1–7). -Secretase, an aspartyl protease, cleaves type I transmembrane proteins and is involved in the pathogenesis of Alzheimer disease (AD)4 (8). The luminal portion of β-amyloid precursor protein (APP) is removed by β-secretase leaving the carboxyl-terminal fragment (βCTF or C99), which is the immediate substrate of -secretase, in the membrane (9). -Secretase cleaves C99 in the middle of its transmembrane domain ( -cleavage). This leads to release of β-amyloid (Aβ) protein that is the major component of senile plaques, one of the neuropathological hallmarks of AD (8). Besides -cleavage, we and other groups have identified -cleavage that occurs close to the membrane/cytoplasmic boundary of APP (10–12). -Cleavage produces two APP intracellular domains (AICD), AICD49–99 and AICD50–99. Familial AD mutations in presenilin 1/2 and APP invariably increase the level of AICD49–99, a potential counterpart of Aβ48, as well as the ratio of Aβ42/Aβ40 (13). In addition, the expression of Aβ48 in cultured cells was shown to lead to an increase in the Aβ42/Aβ40 ratio (14). Thus -cleavage may determine the site preference of the -cleavage and the final Aβ species.
Recently, we established a CHAPSO-solubilized -secretase assay system that exhibits high specific activity (15). We confirmed that equimolar amounts of Aβ and AICD were produced from C99 by -secretase. In a series of experiments, we noted that the concentrations of detergent and phosphatidylcholine significantly affected -secretase activity (15–18). This observation points to the possibility that a change in the composition of the lipid bilayer could have a significant impact on the enzymatic activity of -secretase. The level of secreted Aβ from cultured cells was reported to be attenuated by increasing levels of phosphatidylinositol 4,5-diphosphate [PI(4,5)P2], one of the phosphoinositides (19). The phosphoinositides play pivotal roles in numerous biological processes, such as ion channel regulation, membrane trafficking, cell polarity, and actin rearrangement (20–25).
PI(4,5)P2 is estimated as 0.3–2.0% of the total cellular lipid. McLaughlin et al. (26) estimated that the intracellular concentration of PI(4,5)P2, if uniformly distributed inside the cell, was in the range of 2–30 µM, based on the dissociation constants between PH domains and PI(4,5)P2. Bunce et al. (27) reported that the concentration of PI(4,5)P2 was in the range of 32–159 µM in several cell species. Even though the phosphoinositides are a minor component of cellular lipids, one can assume that their concentrations in the two-dimensional intact membrane would be higher than that reported for the total three-dimensional cell volume. If the volume of the membrane is estimated as 10–20% of the cell volume, the concentrations of PI(4,5)P2 in the membrane are at least five times higher than those in the total cell volume. The local concentration of PI(4,5)P2 at the inner leaflet of neutrophil membrane was reported to be 5 mM in the steady state (28). Further, Sheetz et al. (29, 30) showed that the concentration of PI(4,5)P2 was 4–8 mM in a 50-Å area of the inner leaflet of erythrocyte membrane. In addition, a number of reports showed that PI(4,5)P2 localizes in the detergent-insoluble microdomains (rafts) of the membrane (31–33). It has been proposed that there is a spatially confined pool of PI(4,5)P2 in the membrane (34–37). Thus it is reasonable to consider that the concentration of PI(4,5)P2 in the microdomains of the membrane is much higher than previously thought. -Secretase is also enriched in lipid raft microdomains (38–40). It is likely that the phosphoinositides and -secretase localize in the same membrane microdomains.
Furthermore, phosphoinositides were widely known to be modulated by their concentrations in membrane by extracellular stimulus in physiological condition (41). Studies of several PH domains fused with green fluorescent protein revealed that concentrations of PI(3,4)P2 and PI(3,4,5)P3 were elevated after stimulus in Dictyostelium cells and neutrophils in vivo (21, 22, 42–44). In neutrophils, it has been reported that the local concentration of PI(3,4,5)P3 at the inner leaflet of the plasma membrane is 5 µM and that after extracellular stimulation it increases to 200 µM (28). The concentration of PI(3,4)P2 is estimated to increase from 10–20 to 100–200 µM upon stimulation (28). Winks et al. (45) reported that concentration of PI(4,5)P2 increased from 192–381 to 417–1153 µM after expression of PI5K in superior cervical ganglia. Those observations suggest that concentration of phosphoinositides can be modulated in physiological conditions. Recently, increasing phosphoinositide (PI(4,5)P2) levels alter Aβ production by cultured cells (19), implying a cross-talk between phosphoinositides and -secretase. Here we examined whether there are direct effects of phosphoinositides on -secretase in both CHAPSO-soluble and -insoluble states.
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EXPERIMENTAL PROCEDURES
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Cell Culture—Chinese hamster ovary (CHO) cells were cultured in Dulbecco's modified Eagle's medium (Sigma) containing 10% fetal bovine serum (Invitrogen) and penicillin/streptomycin (Invitrogen). Stable T-Rex-CHO cells (Invitrogen) inducibly expressing C99 were grown in F-12 nutrient mixture (Invitrogen) containing 10% fetal bovine serum (Invitrogen), penicillin/streptomycin, 250 µg/ml Zeocin (Invitrogen), and 10 µg/ml Blasticidine S (Invitrogen) (46).
-Secretase Assay and Aβ Quantification—Microsomal fractions of CHO cells were obtained as previously described (15) and solubilized on ice by the addition of equal volumes of 2x NK buffer (50 mM PIPES, pH 7.2, 250 mM sucrose, 1 mM EGTA, 2% CHAPSO, 1 mM diisopropyl phosphorofluoridate, 20 µg/ml antipain, 20 µg/ml leupeptin, 10 µg/ml TLCK, 10 mM phenanthroline, and 2 mM thiorphan). The supernatant obtained after 100,000 x g centrifugation for 1 h was diluted with three volumes of the dilution buffer (50 mM PIPES, pH 7.2, 0.166% CHAPSO, 250 mM sucrose, 1 mM EGTA, 1 mM diisopropyl phosphorofluoridate, 10 µg/ml antipain, 10 µg/ml leupeptin, 10 µg/ml TLCK, 5 mM phenanthroline, 1 mM thiorphan, 1.33 µM pepstatin A, and 0.133% phosphatidylcholine). The diluted supernatants contained a final concentration of 0.1% (equivalent to 1.3 mM) phosphatidylcholine and 0.375% CHAPSO unless otherwise indicated. Defined amounts of C99-FLAG substrate were incubated with the CHAPSO lysate at 37 °C for 4 h (15). We observed that the addition of 1 µM pepstatin A prevented -secretase-independent C99-FLAG cleavage. Incubated reaction mixtures were subjected to Western blotting for Aβ quantification, as described (14). After Aβ transfer, the nitrocellulose membrane was boiled for 5 min in the aluminum boiling apparatus (Can Do, Tokyo, Japan) for enhanced detection. Aβ on the membrane were visualized by an ECL system (GE Healthcare) using the well characterized monoclonal antibodies 82E1, BA27 (highly specific for the Aβ40 carboxyl terminus), and BC05 (raised against Aβ35–43, specific for the Aβ42 carboxyl terminus, but cross-reactive with CTFs and full-length APP), for assessing the total Aβ, Aβ40, and Aβ42, respectively (47).
Preparation of Notch Substrate—For assessment of -secretase-dependent Notch S3 cleavage in the presence of phosphoinositides, we expressed an artificial Notch substrate with shortened intracellular domain (designated as E Notch-FLAG) in Sf9 cells (48). Isolated Notch substrate was incubated with the CHAPSO lysate at 37 °C for 4 h (15) (supplemental Fig. S1A). -Secretase-dependent S3 cleavage was visualized by detecting shortened Notch intracellular domain fused with FLAG tag (sNICD-FLAG) with ANTI-FLAG® M2 monoclonal antibody (Sigma) (supplemental Fig. S1B). We confirmed that E Notch-FLAG was cleaved at the bona fide S3 cleavage site by -secretase (see supplemental Fig. S1, C and D).
Isolation of CHAPSO-insoluble Rafts—The CHAPSO-insoluble fraction was obtained as described previously (40). The T-Rex-CHO stable cell line was cultured in the presence of tetracycline to induce expression of C99 (46). Microsomal fractions of the cells were homogenized in five volumes of 10% sucrose in MES-buffered saline (25 mM MES, pH 6.5, and 150 mM NaCl) containing 1% CHAPSO. After adjusting the sucrose concentration to 40%, the homogenate was centrifuged on a discontinuous sucrose gradient (5, 35, and 40%) at 39,000 rpm for 20 h at 4 °C on an SW 41 Ti rotor (Beckman). The interface between 5 and 35% sucrose was collected and designated as CHAPSO-insoluble rafts. The CHAPSO-insoluble rafts were diluted with three volumes of dilution buffer (20 mM PIPES, pH 7.2, 140 mM KCl, 250 mM sucrose, 5 mM EGTA) and incubated for 45 min at 37 °C in the presence or absence of PI(4,5)P2. For assessing Aβ production from exogenously added C99-FLAG, the CHAPSO insoluble rafts that were obtained from cells grown in the absence of tetracycline were incubated for 60 min with 100 nM C99-FLAG in the presence or absence of PI(4,5)P2.
Treatment of PLC Inhibitor—7WD10, CHO cells expressing APP751 were cultured in Dulbecco's modified Eagle's medium (Sigma) containing 10% fetal bovine serum (Invitrogen) and 200 µg/ml G418 (49). The cells were treated with phosphatidylinositol specific PLC inhibitor, edelfosin (Calbiochem) at a concentration of 15 µM in the absence of G418 for 6 h. Microsomal fraction of the cells were prepared as described previously (15). 500 µl of the microsomal fraction (2.5 mg/ml protein concentration) was mixed with 1 ml of MeOH:CHCl3 (2:1) and centrifuged at 15,000 rpm for 5 min at 4 °C. Resultant pellet was mixed with the same solvent to complete neutral lipids extraction. 750 µl of MeOH: CHCl3:12 N HCl (40:80:1) was added to the pellet and mixed for extraction of acidic lipids. Supernatant was transferred to a new 1.5-ml tube and mixed with 250 µl of CHCl3 and 450 µl of 0.1 N HCl. After centrifugation, the organic phase was transferred to a new tube and dried up. The dried lipid sample was reconstituted with 80 µl of CHCl3: MeOH:H2O (1:2:0.8) and spotted onto PI(4,5)P2 Mass Strip (Echelon). PI(4,5)P2 in extracted lipid sample was detected with PLC- 1 PH domain glutathione S-transferase-tagged protein (Echelon). Miocrosomal fraction prepared from cells treated with edelfosin was incubated at 37 °C for 0.5 h in the presence of 15 µM edelfosin and subjected to Western blot to assess effect of edelfosin on Aβ production from isolated membrane (10, 13).
Phospholipids and Derivatives— L- -Phosphatidylcholine (PC) was purchased from Sigma, dissolved in 1% CHAPSO solution, and stored as such. D-myo-inositol 1,4,5-triphosphate from Sigma was dissolved in water to 19.6 mM stock solution. PI C-16, phosphatidylinositol 3-phosphate C-16, phosphatidylinositol 4-phosphate C-16, phosphatidylinositol 5-phosphate C-16 (PI(5)P), phosphatidylinositol 3,4-diphosphate C-16 (PI(3,4)P2), phosphatidylinositol 4,5-diphosphate C-16 (PI(4,5)P2), and phosphatidylinositol 3,4,5-triphosphate C-16 (PI(3,4,5)P3) from Cayman Chemical were dissolved in 0.25% CHAPSO and stored as 8.45 mM solutions. It is essential to avoid multiple freezing and thawing of these stock solutions. Stock solutions were repackaged into smaller vials and stored at –20 °C. Defined amounts of phospholipids and derivatives were mixed with -secretase reaction mixtures for incubation as above.
Immunoprecipitation— -Secretase complex was immunoprecipitated with anti-nicastrin polyclonal antibody (Sigma), as previously described (15). After thorough washing, the -secretase complex bound to protein A-Sepharose beads was incubated in 0.25% CHAPSO buffer (50 mM PIPES, pH 7.2, 250 mM sucrose, 1 mM EGTA, 0.25% CHAPSO, 2 mM diisopropyl phosphorofluoridate, 20 µg/ml antipain, 20 µg/ml leupeptin, 20 µg/ml TLCK, 10 mM phenanthroline, 2 mM thiorphan, and 0.1% phosphatidylcholine) with C99-FLAG substrate at 37 °C for 4 h together with defined concentrations of PI(4,5)P2. To evaluate inhibitory effects of PI(4,5)P2 on the interaction between -secretase and C99-FLAG substrate, C99-FLAG prebound anti-FLAG M2 agarose beads (Sigma) were mixed with the CHAPSO-solubilized microsomal fraction of CHO cells and incubated at 4 °C overnight in the presence or absence of 0.845 mM PI(4,5)P2. The agarose beads were washed three times and subjected to Western blotting to visualize -secretase components, including nicastrin, carboxyl-terminal fragment (CTF) of presenilin 1, and Aph-1. Presenilin 1 CTF, Aph-1, and Pen-2 were detected with anti-presenilin 1 CTF antiserum (a gift from Dr. Iwatsubo, University of Tokyo), anti-Aph1 polyclonal antibody (Covance), and anti-Pen-2 polyclonal antibody (50), respectively.
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RESULTS
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Effects of PI(4,5)P2 on -Secretase—To demonstrate the effects of phosphoinositides on -secretase activity, a CHAPSO-solubilized -secretase assay was performed in the presence of various concentrations of PI(4,5)P2 (15). The addition of PC to the CHAPSO-solubilized -secretase reaction mixture at increasing concentrations up to 1.3 mM (equivalent to 0.1%) enhanced the production of Aβ as described previously (15, 17, 18) (Fig. 1A), whereas increasing concentrations of PI(4,5)P2 dramatically reduced Aβ production with an IC50 of 141 µM (equivalent to 0.016%) (Fig. 1B). The inhibitory effect of PI(4,5)P2 was observed even in the presence of 0.1% (1.3 mM) PC, with the IC50 being 551 µM (equivalent to 0.06%) (Fig. 1C). We observed that PI(4,5)P2 suppressed AICD and Aβ production in parallel (data not shown). To further confirm a direct effect of PI(4,5)P2 on -secretase activity, the -secretase complex that was immunoprecipitated with anti-nicastrin antibody was evaluated for Aβ production in the presence of PI(4,5)P2. To enhance the detection of Aβ, the PC was kept to 0.1% in the reaction mixture. As shown in Fig. 2, PI(4,5)P2 inhibited Aβ production in a dose-dependent manner, with the IC50 being 0.0085% (equivalent to 72.3 µM). The values of IC50 in three experimental conditions were different from each other; however, those are in the range of physiological variance of phosphoinositides concentration reported (27). We considered that the concentrations of phosphoinositide employed in this study were physiologically relevant. Aβ40 and Aβ42 produced in the reaction mixture were quantified with BA27 and BC05, respectively. No significant differential effects on Aβ40 and Aβ42 production were noted (Fig. 2B).
In contrast to PC, PI(4,5)P2 contains a large head group with two phosphates (26). We reasoned that this bulky head group caused inhibition of -secretase activity and tested various phosphoinositides using the CHAPSO-solubilized -secretase assay system. The addition of PI tended to reduce productions of Aβ and sNICD-FLAG; however, we could not detect statistic significance (Fig. 3, A and B, and supplemental Fig. S2). The addition of 0.85 mM phosphatidylinositol monophosphate (phosphatidylinositol 3-phosphate and phosphatidylinositol 4-phosphate) altered Aβ and sNICD-FLAG productions (Fig. 3, A and B, and supplemental Fig. S2). Interestingly, the addition of PI(5)P failed to alter Aβ and sNICD-FLAG productions significantly. Phosphatidylinositol diphosphates (PI(3,4)P2 and PI(4,5)P2) and phosphatidylinositol triphosphate (PI(3,4,5)P3) showed significant inhibition of the enzyme activity, which implies that an increasing number of phosphate groups on the inositol ring enhances its inhibitory effect on -secretase, as well as the position of phosphate group on inositol ring (Fig. 3, A and B, and supplemental Fig. S2). It should be noted that these phosphoinositides inhibited AICD production in parallel with Aβ production (data not shown). However, inositol 1,4,5-triphosphate did not alter Aβ production in our assay system (Fig. 3C and supplemental Fig. S2). These data indicate that the phosphorylated inositol moiety in combination with a fatty acid is required for the inhibition of -secretase activity.
Inhibition by PI(4,5)P2 of -Secretase Activity in CHAPSO-insoluble Rafts—We showed that phosphoinositides inhibited -secretase activity in the CHAPSO-soluble fraction. However, the inhibitory effects of phosphoinositides in the soluble fraction may not apply to -secretase that is embedded in membrane. Thus CHAPSO-insoluble rafts from CHO cell membranes were prepared by sucrose density gradient centrifugation and incubated with C99-FLAG substrate in the presence of PI(4,5)P2. We found that lipid rafts prepared from CHO membranes produced Aβ from added C99-FLAG (supplemental Figs. S3 and S4). Fig. 4A shows decreased Aβ production from exogenous C99-FLAG by raft -secretase in the presence of 0.85 mM PI(4,5)P2. This was also the case with endogenous C99 substrate (Fig. 4B). These data indicate that phosphoinositides suppress -secretase even in the membrane-embedded state.

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FIGURE 4. Inhibition of Aβ production by CHAPSO-insoluble rafts in the presence of PI(4,5)P2. CHO cells were solubilized with 1% CHAPSO and subjected to sucrose gradient centrifugation to isolate a detergent-insoluble, floating fraction (see "Experimental Procedures" for details). Isolated CHAPSO-insoluble rafts were incubated with 100 nM C99-FLAG (exogenous) substrate in the presence of 0.85 mM PI(4,5)P2, and Aβ production was quantified by the Western blotting. PI(4,5)P2 was found to inhibit Aβ production (A). The rafts were prepared from CHO cells overexpressing C99 substrate. Isolated CHAPSO-insoluble fraction of the cells was incubated at 37 °C in the presence of 0.85 mM PI(4,5)P2 (B). Aβ production from endogenous C99 was markedly affected by PI(4,5)P2. The data represent the means ± S.D. of three independent experiments. *, p < 0.005; **, p < 0.001 (t test compared with no treatment). 0' and 60' represent samples before and after 60 min of incubation at 37 °C.
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Effect of Phosphatidylinositol Specific PLC Inhibitor on Aβ Production from Isolated Membrane—It was clearly shown that PI(4,5)P2 affected -secretase activity in the detergent-soluble and membrane-embedded state. However, it is not known whether elevation of physiological PI(4,5)P2 levels in cells alters Aβ production. Thus we tested whether pharmacological treatments that increase PI(4,5)P2 level in cells would reproduce our findings on -secretase in the detergent-soluble states. Edelfosin is known as phosphatidylinositol-specific PLC inhibitor. Fig. 5A indicates increase of PI(4,5)P2 level in isolated microsomal fraction of cells treated with edelfosin (see also Fig. 5B). As shown in Fig. 5 (C and F), edelfosin treatment decreased amount of secreted Aβ in the medium. We did not detect significant reduction of Aβ level in the isolated microsomal fraction of cells treated with edelfosin; however, de novo Aβ production from the isolated membrane after incubation at 37 °C for 30 min was significantly reduced (Fig. 5, C–E). These results support the idea that membrane lipid composition alters -secretase activity in cells.
Effect of PI(4,5)P2 on the Association between -Secretase Complex and C99-FLAG Substrate—We showed inhibition by PI(4,5)P2 of -secretase activity in both CHAPSO-soluble and -insoluble states. To gain further insight into the mechanisms of the inhibitory effects of phosphoinositides, we evaluated the association between -secretase complex and C99-FLAG in the presence of PI(4,5)P2. Purified C99-FLAG, which was recaptured with M2 anti-FLAG agarose beads, was incubated with the CHAPSO-soluble fraction of CHO membranes at 4 °C overnight in the presence or absence of 0.85 mM PI(4,5)P2. The C99-FLAG prebound agarose beads were spun down to evaluate the amounts of co-immunoprecipitated -secretase components. Substantial amounts of nicastrin, presenilin 1 CTF, Aph-1aL, and PEN-2 were detected bound to the M2 anti-FLAG agarose beads preincubated with C99-FLAG in the absence of PI(4,5)P2 (Fig. 6A). In contrast, reduced amounts of these -secretase components were found in the presence of PI(4,5)P2, but the interaction between the M2 anti-FLAG agarose beads and C99-FLAG was not affected by PI(4,5)P2 (Fig. 6A, bottom panel). These data suggest that PI(4,5)P2 interferes with the association between -secretase components and C99-FLAG. Interestingly, PI(4,5)P2 markedly decreased the amount of Aph-1aL co-immunoprecipitated with C99-FLAG and concomitantly increased the level of Aph-1aL in the supernatant (Fig. 6A). This suggests that the association of Aph-1aL with C99-FLAG is more susceptible to phosphoinositide inhibition than that of other -secretase components. We also tested whether PI(4,5)P2 peeled away -secretase from prebound C99-FLAG complex. As described above, purified C99-FLAG was recaptured with the M2 anti-FLAG agarose beads and then incubated with CHAPSO-soluble fraction of the CHO membrane at 4 °C overnight in the absence of PI(4,5)P2. After sufficient washing, C99-FLAG beads complexed to -secretase was reincubated at 4 °C overnight in the presence or the absence of 0.85 mM PI(4,5)P2. Western blot analyses revealed that PI(4,5)P2 had no effect on stripping of -secretase from prebound C99-FLAG (Fig. 6B).
Co-immunoprecipitation analyses suggest that PI(4,5)P2 inhibits the association between -secretase complex and C99-FLAG (Fig. 6A). However, it is possible that PI(4,5)P2 mediates dissociation of the -secretase complex itself, rather than of the interaction between -secretase complex and C99-FLAG. To rule out this possibility, the effect of PI(4,5)P2 on the stability of the -secretase complex was investigated. The CHAPSO-soluble fraction was subjected to immunoprecipitation with anti-nicastrin antibody in the presence or absence of PI(4,5)P2 to isolate the -secretase complex. If PI(4,5)P2 induces disassembly of the -secretase complex, its components other than nicastrin would not be co-immunoprecipitated. We did not detect a significant difference between the signals for presenilin 1 CTF, Aph-1aL, and Pen-2 in the presence or absence of PI(4,5)P2, suggesting that PI(4,5)P2 has no effect on the interaction between nicastrin and other components in our assay system (Fig. 6C). Overall, our data suggest that PI(4,5)P2 mediates its inhibitory effect by suppression of the association of -secretase with substrate.
Kinetics of the Inhibition of -Secretase in the Presence of PI(4,5)P2—We showed that PI(4,5)P2 inhibited activity of -secretase through inhibition of substrate binding. This observation suggests that PI(4,5)P2 potentially functions as a competitive inhibitor of -secretase. Thus we tested whether the kinetics of Aβ production in the presence of PI(4,5)P2 showed a double reciprocal plot typical of competitive inhibition. Various concentrations of C99-FLAG were incubated with CHAPSO-solubilized fractions of CHO membrane and defined amounts of PI(4,5)P2. After incubation, the reaction mixtures were subjected to Western blotting (Fig. 7A). As shown in Fig. 7B, double reciprocal plots of -secretase activity in the presence of PI(4,5)P2 generally displayed a pattern characteristic of competitive inhibition. This indicates that PI(4,5)P2 acts principally as a competitive inhibitor of -secretase in this reaction system.

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FIGURE 5. Effect of PI(4,5)P2 elevation on Aβ production from isolated membrane. 7WD10 cells were treated with phosphatidylinositol specific PLC inhibitor, edelfosin at a concentration of 15 µM in the absence of G418 for 6 h. Acidic lipids were extracted from microsomal fraction of the cells and spotted on PI(4,5)P2 Mass Strip. PI(4,5)P2 was visualized with PI(4,5)P2 specific PH domain fused with glutathione S-transferase tag (A). The PI(4,5)P2 level in isolated microsomal fraction was increased after edelfosin treatment (B). The microsomal fraction was incubated at 37 °C for 0.5 h in the presence of 15 µM edelfosin and subjected to Western blot (C). Edelfosin treatment failed to alter intracellular Aβ level (D); however, de novo Aβ production from the fraction after incubation at 37 °C for 30 min was significantly reduced (E). Edelfosin treatment also reduced amount of secreted Aβ into medium (F). The data represent the means ± S.D. of three independent experiments. The p values are indicated in graphs (t test compared with mock).
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DISCUSSION
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Phosphoinositides are minor components of the phospholipids in the biological membrane. Nevertheless, they are pivotal signaling molecules involved in a number of biological processes, such as ion channel regulation, vesicle trafficking, actin polymerization, and cell migration (20–25). Recently it has been reported that the turnover of PI(4,5)P2 is affected in cells expressing a familial AD mutant of presenilin 1 (19). It was also shown that the PI(4,5)P2 level was inversely correlated with the levels of Aβ42 produced by cultured cells (19). PLC is known to hydrolyze PI(4,5)P2, and PLC-1 is abundant in neurons from AD brain (51). These observations suggest that phosphoinositides including PI(4,5)P2 potentially regulate Aβ production and that modulation of phosphoinositide levels could offer a therapeutic approach for AD (19). Because Aβ is produced in the hydrophobic environment surrounded by the lipid bilayer and its secretion is mediated by vesicular trafficking, it is reasonable to postulate that the composition of the lipid bilayer has an influence on Aβ production and secretion. In fact, the production of Aβ was altered by lipids in in vitro -secretase assay systems (15, 17, 18, 52). In the present study, we have shown that phosphoinositides exhibited inhibitory effects on Aβ production by the CHAPSO-solubilized membrane fraction of CHO cells. This was also the case with presenilin 1 mutants (M146L and M233T) (data not shown). Moreover, we have shown that phosphoinositides inhibited the activity of immunoprecipitated -secretase in the CHAPSO-solubilized assay system. Thus phosphoinositides have a direct effect on the activity of solubilized -secretase. In addition, PI(4,5)P2 suppressed Aβ production by CHAPSO-insoluble rafts. Thus inhibitory effects of phosphoinositides were exerted not only on -secretase in the soluble state but also on -secretase embedded in the membrane.

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FIGURE 6. PI(4,5)P2 inhibits the association of -secretase with C99-FLAG substrate. Purified C99-FLAG that was recaptured with anti-FLAG agarose beads was incubated with CHAPSO-solubilized membrane fraction of CHO cells at 4 °C in the presence or absence of 0.85 mM PI(4,5)P2. After thorough washing, the beads were subjected to Western blotting (WB) to visualize co-immunoprecipitated -secretase components. The agarose beads incubated in the presence of 0.85 mM PI(4,5)P2 showed a significant decrease in the signals for nicastrin, presenilin 1 CTF, Aph-1aL and Pen-2 bands (A). The level of C99-FLAG bound to the beads did not alter in the presence of PI(4,5)P2 (A, bottom panel). Interestingly, PI(4,5)P2 failed to peel away -secretase complex prebound to C99-FLAG from the C99-FLAG substrate (B). To rule out the possibility of PI(4,5)P2-induced disassembly of -secretase, the -secretase complex was immunoprecipitated with anti-nicastrin antibody in the presence or absence of 0.85 mM PI(4,5)P2. The intensity of the co-immunoprecipitated -secretase components was not affected even in the presence of PI(4,5)P2 (C). It should be noted that Aph-1aL exhibits longer migration distance in Tris/Tricine gel (B and C), compared with that in Tris/glycine gel (A). These results suggest that -secretase complex is stable in the presence of PI(4,5)P2 and that PI(4,5)P2 inhibits the association between -secretase and the C99-FLAG substrate. The data are representative results of four independent experiments. sup and ppt indicate supernatant and precipitate, respectively, after immunoprecipitation.
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PI(4,5)P2 amounts to 0.3–2.0% of the total cellular lipid. The concentration of PI(4,5)P2 was determined to be in a range of 32–159 µM in a hypothetical cell sphere (27). However, phosphoinositides are generally distributed in the two-dimensional membrane within the cell, not in the three-dimensional space within the cell body. Theoretically, the concentration of PI(4,5)P2 in the lipid bilayer should be higher than that described above. It has been reported that the theoretical local concentration of PI(3,4,5)P3 at the inner leaflet of the plasma membrane of neutrophils is 5 µM (28) and that after extracellular stimulation it increases to 200 µM. The concentration of PI(3,4)P2 is estimated to increase from 10–20 to 100–200 µM upon stimulation. It has been reported that the concentration of PI(4,5)P2 increases from 192–381 to 417–1153 µM after expression of PI5K in superior cervical ganglia (45). PI(4,5)P2 is a major phosphatidylinositol diphosphate, and its local concentration was estimated to be 5 mM in the steady state level (28). Sheetz et al. (29, 30) determined PI(4,5)P2 concentration to be in a range of 4–8 mM in intact erythrocyte membranes scaffolded by the spectrin network. Thus the concentrations of PI(4,5)P2 employed in this study have considerable physiological relevance. In addition, PI(4,5)P2 is reported to be concentrated at the inner leaflet of cholesterol-rich microdomains (rafts) (31–33). Furthermore, it has been reported that -secretase is also enriched in the rafts (38–40). We thus presumed that phosphoinositides including PI(4,5)P2 and -secretase colocalize in the same microdomain in living cells. It would be important in future studies to examine the colocalization of -secretase and phosphoinositides in rafts.
As mentioned above, phosphoinositides inhibit Aβ production from C99-FLAG substrate by -secretase in both CHAPSO-soluble and -insoluble fractions. -Secretase cleaves not only APP but other type I membrane proteins after ectodomain shedding. It would be also important to evaluate inhibitory effects of phosphoinositides on cleavage of other substrates. We generated an artificial Notch substrate ( E Notch-FLAG) that mimicked an S2-cleaved fragment. E Notch-FLAG was incubated with the CHAPSO-soluble fraction of CHO cells in the presence of phosphoinositides. PI(4,5)P2 was indeed found to inhibit cleavage of E Notch-FLAG in a similar fashion to that seen in C99-FLAG (Fig. 3B). This suggests that inhibitory effects of phosphoinositides on -secretase are not substrate-specific.
Most interestingly, PI(4,5)P2 was found to attenuate the association between -secretase and the C99-FLAG substrate. This observation may help us to understand the mechanism of the inhibitory effects of phosphoinositides on -secretase activity. Phosphoinositides are derivatives of phosphatidylinositol. The hexahydric inositol ring of phosphatidylinositol protrudes from the inner leaflet of the lipid bilayer into the cytoplasm. Such a large head group can be phosphorylated and become a landmark of the internal surface of the membrane to recruit potential binding proteins, such as AKT/PKB, spectrin, IRS, PLC-1 , SOS, and dynamin (21, 53–57). Conversely, such a bulky head group may cause steric hindrance for assembly or binding of nearby molecules. However, the large head group alone was not enough to exert an inhibitory effect on -secretase activity. Inositol triphosphate failed to alter Aβ production, suggesting that the fatty acid moiety in combination with a phosphoinositol ring is necessary to alter -secretase activity. We postulate that the fatty acid of phosphoinositides escorts the bulky phosphoinositol into the interface between -secretase and C99-FLAG substrate, leading to the inhibition of -secretase.
The co-immunoprecipitation analyses support the idea that phosphoinositides function at least in part as a competitive inhibitor of -secretase. Unexpectedly, in the presence of PI(4,5)P2 the relative amount of Aph-1aL bound to the substrate was reduced compared with that of other components (Fig. 6A). Because we could not detect any difference in the amounts of co-immunoprecipitated Aph-1aL with anti-nicastrin antibody in the presence or absence of PI(4,5)P2 (Fig. 6C), the reduction in Aph-1 bound to C99-FLAG may be accounted for by PI(4,5)P2-sensitive direct association of Aph-1aL to the substrate. It implies that even free Aph-1aL (that does not participate in a -secretase complex) directly binds to C99-FLAG with PI(4,5)P2 sensitivity. Kinetic analysis of Aβ production in the presence of PI(4,5)P2 displayed a pattern consistent with competitive inhibition. This implies that phosphoinositides bind to substrate-binding site(s) of -secretase complex. To our knowledge, PI(4,5)P2 is the first natural compound to competitively inhibit -secretase.
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FOOTNOTES
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* This work was supported in part by a Grant-in-Aid for Scientific Research on Priority Area-Research on Pathomechanisms of Brain Disorders (to Y. I.), by a Grant-in-Aid for Scientific Research on Encouragement of Young Scientists (A) (to S. F.) from the Ministry of Education, Culture, Sports, Science and Technology, Japan, by funding from the Public Health Research Foundation (to S. F.), and by funding from the Uehara Memorial Foundation (to S. F.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 
The on-line version of this article (available at http://www.jbc.org) contains supplemental Figs. S1–S4. 
1 Present address: Dept. of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan. 
3 Present address: Dept. of Neurology, Graduate School of Medicine, Gunma University, Maebashi, Gunma 371-8511, Japan. 
2 To whom correspondence should be addressed: Dept. of Neuropathology, Faculty of Life and Medical Sciences, Doshisha University, Kyotanabe, Kyoto 610-0394, Japan. Tel.: 81-774-65-6136; Fax: 81-774-65-6135; E-mail: sfunamot{at}mail.doshisha.ac.jp.
4 The abbreviations used are: AD, Alzheimer disease; APP, β-amyloid precursor protein; βCTF, carboxyl-terminal fragment of APP; Aβ, β-amyloid; AICD, APP intracellular domain; sNICD-FLAG, shortened Notch intracellular domain fused with FLAG; PC, phosphatidylcholine; PI, phosphatidylinositol; PI(5)P, phosphatidylinositol 5-phosphate; PI(3,4)P2, phosphatidylinositol 3,4-diphosphate; PI(4,5)P2, phosphatidylinositol 4,5-diphosphate; PI(3,4,5)P3, phosphatidylinositol 3,4,5-triphosphate; CTF, carboxyl-terminal fragment; CHAPSO, 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonic acid; PH, pleckstrin homology; CHO, Chinese hamster ovary; PIPES, 1,4-piperazinediethanesulfonic acid; TLCK, 1-chloro-3-tosylamido-7-amino-2-heptanone or N -p-tosyl-L-lysine chloromethyl ketone; MES, 4-morpholineethanesulfonic acid; PLC, phospholipase C; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine. 
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ACKNOWLEDGMENTS
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We thank Dr. T. Iwatsubo (University of Tokyo) for the antiserum to presenilin 1 CTF; Dr. A. Asami (Takeda Chemical Industries) for BA27 and BC05; Dr. M. Takami (University of Tokyo) for critical reading of this manuscript; Dr. E. H. Koo (UCSD) for 7WD10 cells; and the members of the laboratory for encouragement and helpful discussion.
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