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M213219200v1
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Papers In Press, published online ahead of print February 7, 2003
J. Biol. Chem, 10.1074/jbc.M213219200
Submitted on December 27, 2002
Revised on February 5, 2003
Accepted on February 7, 2003

Epigenomic stress response: Knock-down of DNA methyltransferase 1 triggers an intra S-phase arrest of DNA replication and induction of stress response genes

Snezana Milutinovic, Qianli Zhuang, Alain Niveleau, and Moshe Szyf

Pharmacology Dept., McGill University, Montreal, Quebec H3G 1Y6

Corresponding Author: mszyf{at}pharma.mcgill.ca

The DNA methylation pattern is an important component of the epigenome that regulates and maintains gene expression programs. In this paper we test the hypothesis that vertebrate cells possess mechanisms protecting them from epigenomic stress similar to DNA damage checkpoints. We show that knock down of DNA methyltransferase1 (DNMT1) by an antisense oligonucleotide triggers an intra-S-phase arrest of DNA replication that is not observed with control oligonucleotide. The cells are arrested at different positions throughout the S-phase of the cell cycle suggesting that this response is not specific to distinct classes of origins of replication. The intra S phase arrest of DNA replication is proposed to protect the genome from extensive DNA demethylation that could come about by replication in the absence of DNMT1. This protective mechanism is not induced by 5-azadeoxycytidine (5-aza-CdR) a nucleoside analog that inhibits DNA methylation by trapping DNMT1 in the progressing replication fork, but does not reduce de novo synthesis of DNMT1. Our data therefore suggests that the intra-S-phase arrest is triggered by a reduction in DNMT1 and not by demethylation of DNA. DNMT1 knock down also leads to an induction of a set of genes that are implicated in genotoxic stress response such as NF-kB, JUN-B, ATF3 and GADD45?. Based on this data we suggest that this stress response mechanism evolved to guard against build up of DNA methylation errors and to coordinate inheritance of genomic and epigenomic information.


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