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Papers In Press, published online ahead of print August 31, 2004
Department of Biological Sciences and Chemistry, University of Southern California, Los Angeles, CA 90089-1340
Corresponding Author: mgoodman{at}usc.edu
Three models describing frameshift mutations are classical Streisinger slippage, proposed for repetitive DNA, and misincorporatation misalignment and dNTP-stabilized misalignment, proposed for non-repetitive DNA. We distinguish between models using presteady state fluorescence kinetics to visualize transiently misaligned DNA intermediates and nucleotide incorporation products formed by DNA polymerases adept at making small frameshift mutions in vivo. Human pol
J. Biol. Chem, 10.1074/jbc.M408600200
Submitted on July 29, 2004
Revised on August 30, 2004
Accepted on August 30, 2004
To slip or skip: Visualizing frameshift mutation dynamics for error-prone DNA polymerases
catalyzes Streisinger slippage exclusively in repetitive DNA, requiring as little as a dinucleotide repeat. Escherichia coli pol IV uses dNTP-stabilized misalignment in identical repetitive DNA sequences, revealing that pol
and pol IV use different mechanisms in repetitive DNA to achieve the same mutational endpoint. In non-repeat sequences, pol
switches to dNTP-stabilized misalignment. Pol
generates 1 frameshifts in long repeats and base substitutions in short repeats. Thus, two polymerases can use two different frameshift mechanisms on identical sequences, while one polymerase can alternate between frameshift mechanisms to process different sequences.
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