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A more recent version of this article appeared on October 29, 2004
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Papers In Press, published online ahead of print August 31, 2004
J. Biol. Chem, 10.1074/jbc.M408600200
Submitted on July 29, 2004
Revised on August 30, 2004
Accepted on August 30, 2004

To slip or skip: Visualizing frameshift mutation dynamics for error-prone DNA polymerases

Brigette Tippin, Sawami Kobayashi, Jeffrey G. Bertram, and Myron F. Goodman

Department of Biological Sciences and Chemistry, University of Southern California, Los Angeles, CA 90089-1340

Corresponding Author: mgoodman{at}usc.edu

Three models describing frameshift mutations are “classical” Streisinger slippage, proposed for repetitive DNA, and “misincorporatation misalignment” and “dNTP-stabilized misalignment”, proposed for non-repetitive DNA. We distinguish between models using presteady state fluorescence kinetics to visualize transiently misaligned DNA intermediates and nucleotide incorporation products formed by DNA polymerases adept at making small frameshift mutions in vivo. Human pol mu catalyzes Streisinger slippage exclusively in repetitive DNA, requiring as little as a dinucleotide repeat. Escherichia coli pol IV uses dNTP-stabilized misalignment in identical repetitive DNA sequences, revealing that pol mu and pol IV use different mechanisms in repetitive DNA to achieve the same mutational endpoint. In non-repeat sequences, pol mu switches to dNTP-stabilized misalignment. Pol beta generates –1 frameshifts in “long” repeats and base substitutions in “short” repeats. Thus, two polymerases can use two different frameshift mechanisms on identical sequences, while one polymerase can alternate between frameshift mechanisms to process different sequences.


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H. Zang, A. K. Goodenough, J.-Y. Choi, A. Irimia, L. V. Loukachevitch, I. D. Kozekov, K. C. Angel, C. J. Rizzo, M. Egli, and F. P. Guengerich
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J. Biol. Chem., August 19, 2005; 280(33): 29750 - 29764.
[Abstract] [Full Text] [PDF]




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