Molecular Cloning of SKAP55, a Novel Protein That Associates with the Protein Tyrosine Kinase p59 fyn in Human T-lymphocytes*

In human T-lymphocytes the Src family protein tyrosine kinase p59 fyn associates with three phosphoproteins of 43, 55, and 85 kDa (pp43, pp55, and pp85). Employing a GST-Fyn-Src homology 2 (SH2) domain fusion protein pp55 was purified from lysates of Jurkat T-cells. Molecular cloning of the pp55 cDNA reveals that the pp55 gene codes for a so far nondescribed polypeptide of 359 amino acids that comprises a pleckstrin homology domain, a C-terminal SH3 domain, as well as several potential tyrosine phosphorylation sites, among which one fulfills the criteria to bind Src-like SH2 domains with high affinity. Consistent with this observation, pp55 selectively binds to isolated SH2 domains of Lck, Lyn, Src, and Fyn but not to the SH2 domains of ZAP70, Syk, Shc, SLP-76, Grb2, phosphatidylinositol 3-kinase, and c-abl in vitro. Based on these properties the protein was termed SKAP55 ( s rc kinase-associated phosphoprotein of55 kDa). Northern blot analysis shows that SKAP55 mRNA is preferentially expressed in lymphatic tissues. SKAP55 is detected in resting human T-lymphocytes as a constitutively tyrosine phosphorylated protein that selectively interacts with p59 fyn . These data suggest that SKAP55 represents a novel adaptor protein likely involved in Fyn-mediated signaling in human T-lymphocytes.

In human T-lymphocytes the Src family protein tyrosine kinase p59 fyn associates with three phosphoproteins of 43, 55, and 85 kDa (pp43, pp55, and pp85). Employing a GST-Fyn-Src homology 2 (SH2) domain fusion protein pp55 was purified from lysates of Jurkat T-cells. Molecular cloning of the pp55 cDNA reveals that the pp55 gene codes for a so far nondescribed polypeptide of 359 amino acids that comprises a pleckstrin homology domain, a C-terminal SH3 domain, as well as several potential tyrosine phosphorylation sites, among which one fulfills the criteria to bind Src-like SH2 domains with high affinity. Consistent with this observation, pp55 selectively binds to isolated SH2 domains of Lck, Lyn, Src, and Fyn but not to the SH2 domains of ZAP70, Syk, Shc, SLP-76, Grb2, phosphatidylinositol 3-kinase, and c-abl in vitro. Based on these properties the protein was termed SKAP55 (src kinase-associated phosphoprotein of 55 kDa). Northern blot analysis shows that SKAP55 mRNA is preferentially expressed in lymphatic tissues. SKAP55 is detected in resting human T-lymphocytes as a constitutively tyrosine phosphorylated protein that selectively interacts with p59 fyn . These data suggest that SKAP55 represents a novel adaptor protein likely involved in Fyn-mediated signaling in human T-lymphocytes.
T-lymphocyte activation is initiated following recognition of antigenic peptides in the context of autologous major histocompatibility complex molecules by the clonotypic T-cell receptor (TCR). 1 The activation of cytoplasmic protein-tyrosine kinases (PTKs) and the phosphorylation of a limited number of intracellular and transmembrane proteins on tyrosine residues represent the earliest events that are detectable following engagement of the TCR. p56 lck and p59 fyn , two Src family PTKs are activated as a result of TCR-triggering (1)(2)(3). Whereas the role of Lck during T-cell activation and T-cell development is well documented, the precise function of Fyn in signaling processes in T-lymphocytes remains to be defined.
A role for Fyn has been established during T-cell development, as well as during the initiation of the TCR-mediated signaling cascade. Thus it was shown that transition from immature double positive thymocytes (CD4 ϩ CD8 ϩ ) to mature single positive cells (CD4 ϩ CD8 Ϫ or CD4 Ϫ CD8 ϩ ) during T-cell maturation is accompanied by an increase in TCR expression and a concomitant elevation of the expression level of p59 fyn (4). Furthermore, increased expression of Fyn transcripts in thymocytes of transgenic mice leads to the production of cells exerting enhanced capacity to respond to TCR engagement. Conversely, overexpression of a catalytically inactive form of Fyn substantially inhibits TCR-mediated activation in otherwise normal thymocytes (4). Finally, the disruption of the Fyn gene by homologous recombination in mice results in animals exhibiting a specific lymphoid defect: thymocytes of Fyn knockout mice are unresponsive to stimulation through the TCR, whereas peripheral T-cells reacquire significant signaling capabilities (5,6). These observations suggest a critical role for Fyn in TCR signaling during late stages of thymocyte development. However, it remains to be established whether the normal responses of peripheral T-cells in Fyn-deficient mice reflect outgrowth of clones that no longer require Fyn activity or where Fyn function has been compensated by another PTK.
The involvement of Fyn in the activation of peripheral T-cells initially emerged from the observation that Fyn associates with the TCR-CD3 complex (7,8) and that the kinase is activated following TCR cross-linking (2,3). Moreover, mature T-cell lines underexpressing p59 fyn have been shown to exhibit TCR signaling defects, namely a reduction of protein phosphorylation on tyrosine residues or a lower mobilization of calcium following TCR-CD3 activation when compared with wild type cells (9,10). In other studies, overexpression of a constitutively active form of Fyn was shown to up-regulate the sensitivity of a T-cell hybridoma toward TCR binding (11). In addition, increasing evidence supports a role for Fyn in the recruitment and activation of the ZAP70 kinase during T-cell activation (12)(13)(14).
A major challenge in understanding the role(s) of p59 fyn during T-cell activation will be to define its functional interactions with other cellular proteins. Until now, a limited number of proteins have been shown to interact with p59 fyn through its SH2 and/or SH3 domain. Among these are the PI 3-kinase (15,16), ZAP70 (17), the protooncogene product c-Cbl (18,19), and ␣-tubulin (20), as well as proteins of 43, 55, 62, 82, and 120/130 kDa of as yet unknown identity (21,22).
In this paper, we describe the purification and molecular cloning of a 55-kDa phosphoprotein (pp55) that interacts with Fyn in vivo. pp55 is a novel polypeptide of 359 amino acids that contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, as well as several potential tyrosine phosphorylation sites, among which at least one is highly homologous to the phosphotyrosine-containing sequence (YEEI) that has previously been shown to bind to SH2 domains of Src kinases with high affinity. By Northern blot analysis we demonstrate that pp55 is preferentially expressed in lymphatic tissues. In vitro binding studies show that pp55 selectively binds to Src kinase SH2 domains. Therefore the protein was termed SKAP55 (src kinase-associated phosphoprotein of 55 kDa).
The anti-phosphotyrosine antibody 4G10 was obtained from Upstate Biotechnology, Inc. (Lake Placid, NY) and used at 1 g/ml for immunoblot analysis. A polyclonal antiserum directed against SKAP55 was raised in rabbits immunized with a synthetic peptide corresponding to amino acids 49 -74 and coupled to keyhole limpet hemocyanin, as described previously (24).
Cloning of cDNAs Encoding SKAP55 Protein-Large scale purification of proteins interacting with the SH2 domain of Fyn was performed using a GST-Fyn-SH2 fusion protein as described previously (20). Precipitated proteins were separated by two-dimensional gel electrophoresis and visualized by Coomassie Blue staining of the gel. Prior to electrophoresis the precipitates were spiked with an in vitro radiolabeled Fyn immunoprecipitate obtained from resting T-lymphocytes to allow the localization of proteins of interest. The protein spot corresponding to SKAP55 was cut out from the gels and subjected to digestion using endoproteinase-Lys-C (Boehringer Mannheim). The generated peptides were separated by reverse-phase high performance liquid chromatography (HPLC) and subjected to amino acid microsequencing (25).
Degenerate oligonucleotides corresponding to the sequenced peptides (namely, 5Ј-AARGGNGCNCARGARCTNGA-3Ј and 5Ј-TTYTGCCAYT-CRCTNCCRAA-3Ј) were synthesized and used in polymerase chain reactions to amplify Jurkat cells cDNA. The resulting fragment was sequenced and used further as a probe to screen a ZAP cDNA library derived from human blood (Stratagene). The DNA sequence of the positive clones was determined by standard DNA sequencing of both strands.
Northern Blot Analysis-Two Northern blot filters containing approximately 2 g of poly(A) ϩ RNA/lane from various human tissues (CLONTECH) were hybridized with a radiolabeled probe corresponding to nucleotides 298 -325 of clone 5.2 according to the manufacturer's procedures.
Immunoprecipitation, in Vitro Kinase Assay, and Immunoblot Analysis-Freshly prepared human resting T-lymphocytes (40 ϫ 10 6 ) were lysed in Nonidet P-40 lysis buffer (150 mM NaCl, 20 mM Tris-HCl, pH 7.5, 1% Nonidet P-40, 10 mM EDTA, 10 mM NaF, 1 mM sodium vanadate, 1 mM phenylmethylsulfonyl fluoride, 1 g/ml aprotinin, and 1 g/ml leupeptin) at 4°C for 1 h. Post-nuclear lysates were subjected to anti-p56 lck or anti-p59 fyn immunoprecipitation and when necessary subjected to in vitro kinase assay as described previously (20). Alternatively, SH2 domains from various signaling molecules expressed as GST fusion protein were used (20). Precipitated proteins were released using 1% Triton X-100 lysis buffer supplemented with 8 M urea and separated by means of two-dimensional gel electrophoresis or by conventional SDS-10% PAGE. Western blots analysis was performed using standard procedures that have been described elsewhere (20).

RESULTS AND DISCUSSION
In an attempt to identify proteins that interact with p59 fyn , Nonidet P-40 lysates of freshly prepared resting human Tlymphocytes were subjected to immunoprecipitation using specific antisera directed against p59 fyn and p56 lck . The proteins that co-precipitate with each kinase were subsequently resolved by two-dimensional gel electrophoresis and subjected to anti-phosphotyrosine Western blotting. Fig. 1A demonstrates that under these experimental conditions three tyrosine-phosphorylated proteins with apparent molecular masses of 43, 55, and 85 kDa are detectable in the Fyn immunoprecipitate. The same proteins are phosphorylated in an in vitro kinase assay of a Fyn immunoprecipitate prepared from resting T-cells (Fig.  1B). In addition, the 55-and 85-kDa proteins are also precipitated by a recombinant Fyn-SH2 domain from Nonidet P-40 lysates of Jurkat cells (Fig. 1C), suggesting that their interaction with Fyn could be mediated via the SH2 domain of the kinase. In contrast to Fyn, the anti-Lck precipitate consists of a unique protein spot that corresponds to p56 lck (Fig. 1D). Furthermore, none of the Fyn-associated phosphoproteins was found to associate with the third Src PTK expressed in Tlymphocytes, p62 yes (not shown). These data suggest a selective association between Fyn and tyrosine phosphorylated pp43, pp55, and pp85 and further corroborate the idea of differential compositions of the Fyn and Lck complexes in human T-lymphocytes as suggested by others and us (20,21,26,27).
Because none of the Fyn-associated proteins described above was identified by antibodies or antisera directed against known signaling molecules expressed in human T-lymphocytes, we attempted their purification and molecular characterization. To this end a GST-Fyn-SH2 fusion protein coupled to glutathione-Sepharose beads was employed to precipitate tyrosine phosphorylated polypeptides from lysates of pervanadatetreated Jurkat T-cells. Whereas the amounts of pp43 and pp85 were below the level of detection under these conditions, high amounts of the 55-kDa Fyn-associated protein (pp55) were obtained. The Coomassie spots corresponding to pp55 were excised from the gels, digested with endoproteinase-Lys-C, purified by HPLC, and subjected to microsequencing. Amino acid sequence was obtained from two peptides (Fig. 2).
Combinations of degenerate oligonucleotides deduced from these two peptides were used in polymerase chain reactions on Jurkat cDNA and led to the isolation of a ϳ 100-base pair fragment. This fragment was used to screen a ZAP cDNA library from human blood, which resulted in the identification of several cDNA clones. Fig. 2 shows the DNA sequence, determined from both strands, of the longest clone (clone 5.2). DNA sequencing of the remaining clones indicated that they were derived from the same gene as clone 5.2. The cDNA sequence was further confirmed by sequencing the products resulting from 5Ј and 3Ј rapid amplification of cDNA ends experiments performed on human leukocyte cDNA (not shown).
As shown in Fig. 2, clone 5.2 contains a 1542-base pair cDNA insert with an open reading frame that starts at nucleotide 71 and terminates at nucleotide 1150. The cDNA sequence codes for a 359-amino acid polypeptide with a calculated molecular mass of 41.3 kDa, which also contains the two peptides that were identified by microsequencing of purified pp55. Transfection of Jurkat cells with pp55 cDNA resulted in the overexpression of a 55-kDa protein that co-migrates with the endogenously expressed pp55 (not shown), suggesting that conformational effects and/or post-translational modifications could influence the mobility of pp55 in SDS-PAGE. Using a polyclonal pp55 antiserum, a constitutively tyrosine phosphorylated protein of 55 kDa is precipitated from lysates of resting human T-lymphocytes (Fig. 3, A and B). Perhaps more importantly, analysis of a Fyn immunoprecipitate by means of anti-pp55 Western blotting revealed that the 55-kDa phosphoprotein that co-precipitates with p59 fyn in resting T-lymphocytes exactly co-migrates with pp55 (Fig. 3, compare C and D). Collectively these data demonstrate that clone 5.2 represents a full-length cDNA clone coding for the Fyn-associated pp55 molecule.
Comparison of the predicted amino acid sequence of pp55 with all available data bases showed that the pp55 cDNA encodes a so far not described protein that contains a PH domain (residues 106 -205), a C-terminal SH3 domain (amino acids 300 -356), and several putative phosphorylation sites (Fig. 2). Importantly, one potential tyrosine phosphorylation site is part of the peptide sequence 268 EDIYEVL 274 , which would be predicted to bind to isolated SH2 domains of Src PTKs with high affinity based on its homology with the EXXYXXL motif (28).
To further assess this possibility we investigated the capacity of SH2 domains derived from p56 lck , p59 fyn , p56 lyn , p60 src , PI 3-kinase, ZAP70, Syk, c-abl, Shc, SLP-76, and Grb2 to bind to endogenously expressed pp55. To this end the individual SH2 domains were expressed as GST fusion proteins, coupled to glutathione-Sepharose beads, and incubated with a Nonidet P-40 lysate of Jurkat T-cells. Bound proteins were resolved by SDS-PAGE, transferred onto nitrocellulose, and probed with anti-pp55 antiserum. Fig. 4 demonstrates that pp55 preferentially binds to the isolated SH2 domains of Fyn, Lyn, Src and Lck, whereas no signal is obtained when the SH2 domains of PI 3-kinase, ZAP70, Syk, Shc, SLP-76, Grb2, or c-abl are used for precipitation. Due to the highly selective interaction with Srclike SH2 domains, we termed the protein SKAP55. The finding that SKAP55 equally binds to the isolated Fyn and Lck SH2 domains whereas it is not detectable as a tyrosine phosphorylated protein in Lck immunoprecipitates (see Fig. 1) obtained from resting T-lymphocytes resembles the situation we have previously reported for ␣-tubulin (20). SKAP55 mRNA expression was determined by Northern blot analysis employing poly(A) ϩ RNA obtained from a variety of primary human tissues. Fig. 5A shows that the 1.5-kilobase SKAP55 transcript is highly expressed in thymocytes and peripheral blood lymphocytes and to a lesser extent in spleen cells. A positive signal was also detected in testis at a slightly higher molecular mass. This could indicate the existence of an alternatively spliced form of pp55 or of a highly related gene expressed in this organ. The latter possibility is supported by our finding that hybridization of human genomic DNA with a full-length SKAP55 cDNA probe results in appearance of several distinct bands (not shown). No SKAP55-specific transcript was observed in any of the other tissues that were analyzed (Fig. 5A). These data show that pp55 is preferentially expressed in lymphatic organs. Among transformed cells of hematopoietic origin SKAP55 was exclusively detected in Fyn-SH2 precipitates prepared from lysates of Jurkat cells but not in precipitates obtained from the erythroleukemic cell line K562, the Epstein-Barr virus-transformed B-cell line LAZ-509 and the myeloid cell lines HL60 and U937 (Fig. 5B). Identical results as shown here for Fyn-SH2 precipitates were obtained when whole cell lysates were probed with SKAP55 antibodies (not shown), supporting the idea that SKAP55 is preferentially expressed in T-lymphocytes.
In summary we have identified and cloned a novel cytoplasmic protein, SKAP55, which is preferentially expressed in human T-lymphocytes where it specifically interacts with the protein-tyrosine kinase p59 fyn . The presence of a PH domain and a SH3 domain suggests that SKAP55 is capable of interacting with several other intracellular proteins and thus could represent a novel adaptor protein involved in Fyn-mediated signaling. The constitutive tyrosine phosphorylation and Fynassociation of SKAP55 in nonstimulated T-lymphocytes further could suggest that SKAP55 exerts its signaling function even in the absence of external stimuli. Consistent with this assumption is that we have so far observed no alterations in the level of tyrosine phosphorylation of SKAP55 or in its association with Fyn following short time stimulation of T-lymphocytes through the TCR-CD3 complex. Vanadate treatment of T-lym-phocytes, which is believed to concomitantly activate PTKs and inhibit protein-tyrosine phosphatases, also not alters the tyrosine phosphorylation status of SKAP55 or its association with Fyn (not shown). However, the quality of the signal that is mediated via SKAP55 as well as potential modifications of this signal during T-cell activation have to be determined in further studies. In addition it will be of importance to identify the 43and the 85-kDa phosphoproteins, which also constitutively associate with Fyn in T-lymphocytes. FIG. 5. Analysis of SKAP55 expression. A, Northern blot analysis was performed on poly(A) ϩ RNA obtained from human tissues using a radiolabeled probe corresponding to nucleotides 298 -325 of SKAP55 cDNA clone 5.2. B, for Western blot analysis, precipitation was realized using the GST-Fyn-SH2 fusion protein on cellular lysates from the indicated cell lines. SKAP55 was detected using specific SKAP55 antiserum and the ECL detection system. PBL, peripheral blood lymphocytes.