Molecular and Biochemical Characterization of an Endo-β-1,3-glucanase of the Hyperthermophilic ArchaeonPyrococcus furiosus *

We report here the first molecular characterization of an endo-β-1,3-glucanase from an archaeon.Pyrococcus furiosus is a hyperthermophilic archaeon that is capable of saccharolytic growth. The isolated lamA gene encodes an extracellular enzyme that shares homology with both endo-β-1,3- and endo-β-1,3-1,4-glucanases of the glycosyl hydrolase family 16. After deletion of the N-terminal leader sequence, alamA fragment encoding an active endo-β-1,3-glucanase was overexpressed in Escherichia coli using the T7-expression system. The purified P. furiosus endoglucanase has highest hydrolytic activity on the β-1,3-glucose polymer laminarin and has some hydrolytic activity on the β-1,3-1,4 glucose polymers lichenan and barley β-glucan. The enzyme is the most thermostable endo-β-1,3-glucanase described up to now; it has optimal activity at 100–105 °C. In the predicted active site of glycosyl hydrolases of family 16 that show predominantly endo-β-1,3-glucanase activity, an additional methionine residue is present. Deletion of this methionine did not change the substrate specificity of the endoglucanase, but it did cause a severe reduction in its catalytic activity, suggesting a structural role of this residue in constituting the active site. High performance liquid chromatography analysis showed in vitrohydrolysis of laminarin by the endo-β-1,3-glucanase proceeds more efficiently in combination with an exo-β-glycosidase from P. furiosus (CelB). This most probably reflects the physiological role of these enzymes: cooperation during growth of P. furiosus on β-glucans.

Presently, no ␤-specific endoglucanases have been reported in the Archaea, the third domain of life (32,37). In this study, we report the characterization of an endo-␤-1,3-glucanase from Pyrococcus furiosus, a heterotrophic hyperthermophilic archaeon that is able to grow optimally at 100°C on a wide range of carbohydrate substrates, including starch, maltose, and cellobiose (32,33). P. furiosus was found to contain several hydrolytic enzyme activities related to sugar degradation (34) and utilizes a modified Embden-Meyerhof pathway, which involves at least three unique enzymes: two ADP-dependent kinases (35) and a glyceraldehyde-3-phosphate:ferredoxin oxidoreductase (36). However, P. furiosus does not grow on cellulose or carboxymethylcellulose, and nothing has been described concerning the growth on other ␤-linked carbohydrates substrates, such as laminarin, ␤-glucan, and lichenan (32,37).
The P. furiosus lamA gene was characterized and found to encode a secreted endo-␤-1,3-glucanase belonging to glycosyl hydrolase family 16. Further characterization of the overproduced catalytic domain of this enzyme revealed that it was the most thermostable endo-␤-1,3-glucanase detected so far. A mutant form of the catalytic domain was obtained after site-directed mutagenesis of the lamA gene and revealed that a conserved methionine residue is required for full activity. Based on the specificity of the endo-␤-1,3-glucanase and the capacity of P. furiosus to grow on laminarin (described herein), a role for this extracellular enzyme during the fermentation of ␤-1,3linked glucose polymer is proposed.

EXPERIMENTAL PROCEDURES
Organisms and Growth Conditions-P. furiosus (DSM 3638) was used in this study (32). Escherichia coli BL21 (DE3) harboring pLysE * This work is supported in part by Contract BLOT-CTg6-0488 of the European Union. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBank TM /EBI Data Bank with accession number(s) AF013169.
‡ To whom correspondence should be addressed.  (40). E. coli was grown in LB medium in a rotary shaker at 37°C. Ampicillin was added to LB medium in a final concentration of 100 g/ml. Isopropyl-␤-D-thiogalactopyranoside was added at a final concentration of 0.4 mM for the induction of gene expression.
Cloning of the Endo-␤-1,3-glucanase Gene-A 4.8-kilobase pair fragment containing the lamA gene coding for P. furiosus endo-␤-1,3-glucanase was cloned into pTZ19R (41). Based on its sequence, primers were designed to amplify the lamA gene by the polymerase chain reaction on a DNA Thermal Cycler (Perkin-Elmer Corp., Norwalk, CT) (Fig. 1). The two primers (with NcoI and BamHI restriction sites in boldface), were as follows: BG 194, 5Ј-GCGCGCCATGGTCCCTGAAG-TGATAGAAATAGAT, sense; and BG 195, 5Ј-CGCGCGGATCCTCAA-CCACTAACGAATGAGTA, antisense. In addition to the template and the primers, the 100-l reaction mixture contained 0.2 mM dNTPs, Taq DNA polymerase buffer, 5 mM MgCl 2 , and 5 units of Taq DNA polymerase (Life Technologies Inc.) and was subjected to 30 cycles of amplification (30 s at 94°C, 30 s at 50°C, and 30 s at 72°C). The putative signal peptide of the endoglucanase was excluded to produce the mature enzyme in the cytoplasm of E. coli. A polymerase chain reaction product with the expected size was digested with NcoI and BamHI, cloned in a pGEFϩ vector (38), resulting in pLUW530, and transformed into E. coli TG1 and BL21 (DE3), pLysE using standard procedures (42).
Overexpression of the lamA Gene and Purification of the Endo-␤-1,3glucanase-An overnight culture of E. coli BL21 (DE3), pLysE harboring pLUW530 was diluted 1:20 and grown until the A 600 reached 0.6. The culture was induced with 0.4 mM isopropyl-␤-D-thiogalactopyranoside for 4 h. Cells were harvested by centrifugation, resuspended in 100 mM sodium citrate buffer (pH 5.5), and sonicated using a Branson sonifier. Cell debris was removed by centrifugation (10,000 ϫ g for 10 min). The resulting supernatant was heated for 30 min at 70°C, and precipitated proteins were removed by another centrifugation. The supernatant was subsequently dialyzed against Tris-HCl buffer (20 mM, pH 8.0) and loaded on a Q-Sepharose Fast Flow column (Pharmacia) (5 ϫ 25 cm) that was equilibrated with the same buffer. Bound proteins were eluted by a linear gradient of NaCl (0 -1 M in Tris-HCl buffer). Active fractions eluted around 0.5 M NaCl.
␤-Glucanase Assay, Protein Determination, and Western Blot-The standard assay for ␤-glucanase activity was carried out at 80°C, for 10 min, using 0.5% (w/v) laminarin (Sigma) as substrate in 0.1 M phosphate (NaH 2 PO 4 , K 2 HPO 4 ) buffer (pH 6.5). The reducing sugars released were detected by the dinitrosalicylic acid method, with glucose as a standard (44). Enzyme and substrate blanks were also included. 1 unit of enzyme activity was defined as the amount of enzyme required to release 1 mol of reducing sugars/min. Protein concentrations were determined by the method of Bradford, with bovine serum albumin as the standard (45).
Antibodies were raised against LamA by injecting enzyme purified from E. coli into rabbits. The proteins were separated by SDS-PAGE before Western blotting onto nitrocellulose filters. The blots were incubated with serum containing antibodies raised against LamA (dilution, 1:1000). The reaction of proteins with the antibodies was detected using the alkaline phosphatase system (Promega).
Temperature and pH Optima, Thermal Stability, and Kinetic Parameters-The optimal temperature was determined by running the standard assay at temperatures from 40 to 115°C. The optimal pH of the enzyme was determined by running the standard assay at 80°C using citrate-phosphate (citric acid, NaH 2 PO 4 ) buffer (0.1 M) and phosphate (NaH 2 PO 4 , K 2 HPO 4 ) buffer (0.1 M) for pH ranges 4 -7 and 6 -8, respectively. Thermostability was determined using diluted enzyme (0.14 mg/ml pure enzyme was diluted 10 times in 200 mM Tris-HCl buffer, pH 6.5), incubated at 80, 90, and 100°C. Samples were taken at time intervals, and residual activity was determined by the standard assay at 80°C. Michaelis-Menten constants were determined from Lineweaver-Burk representations of data obtained by determining the initial rate of laminarin and lichenan hydrolysis under the assay conditions described above and using a range of 0.25-10 mg of substrate/ml.
Mutagenesis of the lamA Gene-The plasmid pLUW500, carrying the lamA gene, was used as a template for mutagenesis following the splicing by overlap extension polymerase chain reaction (46). The first step comprised the use of primers introducing the mutation and the two flanking primers (BG 194 and BG 195), described above. The two mutagenesis primers were as follows: BG 227, 5Ј-GCCAAGGAATTCTAT-GTCTATTTCTCCACAATTTGGC, antisense; and BG 226, 5Ј-GAAAT-AGACATAGAATTCCTTGGCCATGAGCAA, sense. The second step used the overlapping products of the first two polymerase chain reactions as a template and the flanking primers (BG 194 and BG 195) to yield the lamA gene with the mutation. To simplify detection of mutants, an EcoRI site (in boldface in the primers, above) was created. The amplified DNA was cloned as a HindIII/BamHI fragment into the lamA gene in pLUW530. The mutation was checked by EcoRI digestion and DNA sequence analysis. The resulting plasmid (pLUW531) was transformed to E. coli BL21 (DE3), pLysE for overproduction of the protein.
DNA Sequencing-Nucleotide sequencing was performed by the dideoxynucleotide chain termination method (47) with a Li-Cor automatic sequencing system (model 4000L). Computer analysis of sequencing data was performed by using the PC/GENE program, version 5.01 (IntelliGenetics Inc., Moutain View, CA) and the GCG package, version 7.0, at the CAOS/CAMM Center of the University of Nijmegen (Nijmegen, The Netherlands).

RESULTS
Cloning and Sequencing of the lamA Gene Encoding an Endo-␤-1,3-glucanase from P. furiosus-The nucleotide sequence of a part of the 4.8-kilobase pair DNA insert from pLUW500 (41) 2 revealed the presence of an 894-bp open reading frame (Fig. 1). The encoded 297-amino acid protein was found to be homologous to a family bacterial ␤-1,3and ␤-1,3-1,4-endoglucanases (see below) and contains a putative signal peptide of 20 residues (49). The molecular mass of the predicted mature protein was found to be 31,550 Da, and the estimated isoelectric point was 5.15. To overproduce this ␤-glucanase, the lamA gene was amplified by the polymerase chain reaction method and cloned into pGEFϩ (38) under control of the T7 promoter (39). The resulting plasmid, containing the catalytic domain of the endo-␤-1,3-glucanase (starting at residue 35 and called LamA), was named pLUW530. The plamid pLUW530, harboring lamA, was checked by DNA sequence analysis.
Primary Structure Comparison-Comparison of the deduced primary structure of lamA with enzymes present in the GenBank Data Base indicated that the highest similarity was with representatives of family 16 of glycosyl hydrolases, which includes bacterial endo-␤-1,3-and endo-␤-1,3-1,4-glucanases, Streptomyces coelicolor agarase, and Alteromonas carrageenovora -carrageenase. Scores of 52.4 and 46.9% identity were found with the ␤-glucanases of T. neapolitana and O. xanthineolytica, respectively. Multiple alignments of the deduced amino acid sequence of P. furiosus lamA and other ␤-glucanases showed many conserved amino acids (Fig. 2), including glutamate 170 and glutamate 175 (P. furiosus amino acid numbering is used throughout the paper). 1 The abbreviation used is: PAGE, polyacrylamide gel electrophoresis. 2  The results of structural analysis and mutagenesis (50 -53), combined with inhibitor attachment studies of Bacillus ␤-glucanases (52,54), showed the direct involvement of these two carboxylic acids in catalysis. Glutamate 175 corresponds to the general acid, and glutamate 170 corresponds to the catalytic nucleophile or plays a role in electrostatic stabilization of an oxocarbonium intermediate ion (55). Moreover, the crystal structure of the hybrid Bacillus ␤-1,3-1,4-␤-glucanase (52) showed the presence of a calcium binding site on the surface of the enzyme. Experiments demonstrated that calcium, bound to the hybrid Bacillus enzyme, stabilizes the three-dimensional structure of the protein, leading to increased thermal stability (56,57). The calcium atom is bound (52) on the convex face of the protein, to the backbone carbonyl oxygens atoms of proline (9), glycine 78 (45) and aspartate 287 (207) and to the carboxylate oxygen of aspartate 287 (207) (italic numbers correspond to Bacillus hybrid ␤-glucanase numbering (52)). This aspartate 287 residue is conserved among most of the ␤-glucanases of the family 16 (Fig. 2). The P. furiosus ␤-1,3-glucanase also contains this aspartate residue, and this enzyme was indeed found to be protected by calcium against thermal inactivation as well (data not shown).
Overexpression of the lamA Gene in E. coli and Purification of the Endo-␤-1,3-glucanase-To characterize P furiosus endo-␤-1,3-glucanase, we overexpressed its catalytic domain, hereafter called LamA, in E. coli BL21 (DE3), pLysE. The E. coli strain harboring the plasmid pLUW530 was grown untill mid-log phase and induced by isopropyl-␤-D-thiogalactopyranoside. SDS-PAGE analysis of cell free extract of induced cells revealed an additional band of 30-kDa, corresponding with the calculated molecular mass of the lamA product (Fig. 3). The 30-kDa band was absent in extracts of E. coli BL21 (DE3), pLysE carrying the pGEFϩ plasmid without insert (Fig. 3). The level of LamA production in E. coli harboring pLUW530 was found to be 150 units/mg of total protein. Using this expression system, LamA was produced in a soluble form, with levels of up to 15% of the total cell protein. LamA could easily be purified to homogeneity by a two-step purification procedure consist-ing of a heat incubation (30 min at 70°C) that resulted in the denaturation of the majority of the E. coli proteins, followed by an anion exchange chromatography step (data not shown). About 7-fold purification was obtained, and the isolated enzyme was estimated by SDS-PAGE to be at least 95% pure (Fig. 3).
Endo-␤-1,3-glucanase Characterization-The specific enzyme activities of the purified LamA ␤-glucanase with various substrates are summarized in Table I. Control extracts from E. coli carrying pGEFϩ did not degrade the tested substrates. These results indicate that LamA has the highest specificity for the soluble ␤-1,3-glucan laminarin. A 10-fold lower activity was observed on ␤-1,3-1,4-linked glucans, such as lichenan and barley ␤-glucan. The ␤-1,4-linked substrates (carboxymethyl cellulose, cellulose, and xylan) were not hydrolyzed. Based on the substrate specificity, the LamA enzyme produced in E. coli was characterized as ␤-1,3-glucanase (laminarase; EC 3.2.1.39). The mode of action of LamA was examined by analyzing the corresponding hydrolysis products by high performance liquid chromatography (Fig. 4). The enzyme cleaved laminarin randomly, yielding glucose, laminaribiose, and higher laminari-oligosaccharides. These results confirm that LamA is an endo-␤-1,3-glucanase. The combined action of LamA and CelB (an exo-␤-glycosidase from P. furiosus (32,41)) resulted in the almost complete hydrolysis of laminarin (96%) to glucose. The incubation of laminarin under the same conditions with CelB only resulted in the degradation of 5% of the laminarin, with only glucose as end product.
The laminarase enzyme activity was investigated at different pH values and temperatures (Fig. 5). The optimal pH was found to be 6 -6.5. The enzyme exhibited at least 80% of its optimal activity over a rather broad pH range, from 5 to 7 (Fig. 5A). The temperature for maximum activity was 100 -105°C. The enzyme was almost inactive at 40°C and began to show significant activity above 60°C (Fig. 5B). Thermal stability was investigated by incubating the pure enzyme for up to 110 h at different temperatures (Fig. 6). The enzyme retained 100% of its laminarase activity after 110 h of incubation at 80°C. At higher temperatures, thermostability decreased: at 90°C and 100°C, the enzyme showed a half-life of 64 and 19 h, respectively. At 110°C, the enzyme was rapidly inactivated, with a half-life of only 15 min (data not shown).
Site-directed Mutagenesis of the P. furiosus Endo-␤-1,3-glucanase-To investigate whether the deletion of methionine at position 174 in LamA would affect the ␤-1,3 substrate specificity of the enzyme, a mutated lamA gene was constructed, resulting in plasmid pLUW530. Relative activities and kinetic characteristics of mutant and wild-type enzymes were determined with laminarin and lichenan as substrates (Table II). The specific activities of the mutant LamA, on both laminarin and lichenan, are about 10-fold lower than the respective wildtype values. Catalytic parameters were determined at 80°C and pH 6.5 (optimal conditions for the wild-type enzyme). The methionine deletion led to an enzyme with 13.1% of wild-type V max and a slightly higher K m on laminarin as a substrate. With lichenan as substrate, the mutant LamA had 7.9% of the wild-type V max and the same K m value.
Detection of the Endo-␤-1,3-glucanase in P. furiosus-The unexpected discovery of the endo-␤-1,3-glucanase in P. furiosus prompted us to study the capacity of this hyperthermophilic archaeon to grow on ␤-1,3-linked glucose polymers. Remarkably, P. furiosus was found to grow on laminarin (0.3% w/v) and lichenan (0.3% w/v) as substrates (data not shown), and endo-␤-1,3-glucanase activity was detected in the culture medium. Western blot analysis with immune serum directed against LamA gave an immunoreactive band with the culture supernatant of P. furiosus grown on laminarin as a substrate (Fig. 3). The product from P. furiosus appeared to be slightly bigger (by approximately 1 kDa) than the one expressed in E. coli, which is in agreement with the fact that we deleted, during the overexpression step, a Nterminal fragment of 34 amino acids, which is larger than the predicted signal peptide of 20 amino acids.

DISCUSSION
In this paper, we describe the overexpression of the lamA gene, which encodes an extremely thermostable endo-␤-1,3glucanase from the hyperthermophilic archaeon P. furiosus. The overproduction and purification of the endo-␤-1,3-glucanase LamA was carried out by cloning a lamA gene fragment into the T7 expression system after deletion of the hydrophobic N-terminal sequence (34 amino acids). This is the first description of an endo-␤-1,3-glucanase from an archaeon, and it is the most thermostable endo-␤-1,3-glucanase known up to now. The second most thermostable endoglucanase of the family 16 of glycosyl hydrolases characterized is that of the thermophilic bacterium R. marinus, which has an optimal temperature of 85°C and has 85% residual activity after 16 h incubation at 80°C. The optimal temperature of the P. furiosus ␤-glucanase is 100 -105°C, and the enzyme retained 100 and 50% of its activity after incubation for 85 h at 80°C and 16 h at 100°C, respectively. The optimal temperature of the enzyme is near the optimal growth temperature (100°C) of the P. furiosus strain (35). The enzyme activity has a broad pH optimum around pH 6, which is comparable to other endo-␤-1,3-glucanases and endo-␤-1,3-1,4-glucanases, with the exception of the Bacillus brevis enzyme, which has optimal activity at pH 9.0. The P. furiosus ␤-glucanase was able to hydrolyze both ␤-1,3-glucan and ␤-1,3-1,4-glucan but not the ␤-1,4-linked substrates like cellulose. Bacterial laminarases and lichenases often yield trisaccharides and tetrasaccharides as the main degradation products (58). On the other hand, like other bacterial and fungal endo-␤-1,3-glucanases (2,26,28), the endo-␤-1,3-glucanase of P. furiosus hydrolyzes ␤-1,3-glucans with glucose, laminaribiose, and laminaritriose as end products.
All of the bacterial laminarases and lichenases sequenced so far have been classified in the same family 16 of glycosyl hydrolases. The mechanism for ␤-glucanase action must take into account two general considerations (55,59). The hydrolysis of the glycosyl bond can proceed via either retention or inver- Enzyme activity was measured in 100 mM phosphate buffer at pH 6.5 for 5 min. All substrates were used at a concentration of 5 mg/ml. Each assay was performed with 0.68 g of protein per ml. The amount of reducing sugars released was detected by the dinitrosalicylic acid method (44). Activity using p-nitrophenyl-␤-D-cellobioside was determined by using the release of pNP by absorbance at 405 nm.

Substrate
Main linkage type (monomer) a Specific activity sion of the configuration at the anomeric carbon atom. Because NMR analysis has indicated retention of configuration in case of the Bacillus licheniformis ␤-glucanase (60), the same stereochemical course is assumed to hold true for all other members of the family (61). This mechanism requires two functional groups of the enzyme to be present in the appropriate spatial setting. The first acts either as a nucleophile or by providing electrostatic stabilization, and the second acts as a general acid. Several experiments with ␤-glucanases from different Bacillus species (54,55) demonstrated the role of glutamate 170 as the catalytic residue involved in the nucleophilic attack on the substrate. Glutamate 175 was demonstrated to be the most likely candidate to function as the general catalyst (50,51). As demonstrated by the crystal structure of the Bacillus macerans enzyme complexed with a substrate analogue (50,52,62), the ␤-glucanase substrate binds to a pronounced channel on the molecular surface, in which four residues (glutamate 170, aspartate 172, glutamate 175, and glycine 178) are located on the same ␤-strand (52). These residues are completely conserved in all available sequences of ␤-glucanases (Fig. 2). Interestingly, the alignment suggests that amino acid sequences surrounding the active site can be divided into two categories ( Fig. 2). From glutamate 170 to phenylalanine 176, there is a strict alternation of polar and nonpolar side chains in the catalytic sites of the endo-␤-1,3-1,4-glucanases. This organization is different in the endo-␤-1,3-glucanases because of the insertion of an extra methionine residue between isoleucine 173 and glutamate 175. Assuming that both the active site structure and the catalytic mechanism are similar within a family, this residue has been proposed to form a ␤-bulge, introducing a kink in the ␤-strand and thereby allowing the methionine side chain to point toward the hydrophobic core and the glutamate 175 to participate in catalysis (50,63). This structural rearrangement of the active site most likely would affect catalysis. Morever, substrate specificity analysis within glycosyl hydrolyze family 16 shows that these enzymes can be classified in two subfamilies: (i) a group of ␤-glucanases able to hydrolyze ␤-1,3-glucan or both ␤-1,3and ␤-1,3-1-4-glucan (such in the case of P. furiosus and R. marinus); and (ii) a group of ␤-1,3-1-4-glucanases. The structural change brought about by the inserted methionine has been correlated with the altered specificity, from ␤-1,3-1,4 linked substrates to ␤-1,3 linkages ones (28,50). The role of this extra methionine in P. furiosus ␤-glucanase was investigated by site-directed mutagenesis. Removal of methionine 174 in the P. furiosus ␤-glucanase resulted in enzyme activity that was decreased by a factor of 10 for both laminarin and lichenan. However, we did not observe a shift of relative affinity of the mutant enzyme from ␤-1,3-glucan toward ␤-1,3-1,4-glucan substrates. Hence, deletion of methio-FIG. 6. Thermal stability of the P. furiosus endo-␤-1,3-glucanase. The enzyme was preincubated at 80°C (f), 90°C (q), and 100°C (OE) in 200 mM Tris-HCl buffer, pH 6.5. Residual activity was measured in 100 mM phosphate buffer at pH 6.5 for 5 min, using laminarin as substrate. 100% activity corresponds to 945 units/mg of protein.

TABLE II
Enzyme activity and kinetic parameters of wild type and mutant lamA of P. furiosus Lineweaver-Burk plots were used to determine the kinetic constants. Activity on laminarin and lichenan were measured in 100 mM phosphate buffer at pH 6.5 for 5 min. Substrates were used at different initial concentrations. Each assay was performed with 0.68 g of protein/ml. The amount of reducing sugars released was detected by the dinitrosalicylic acid method (44 a Enzyme activity was measured in 100 mM phosphate buffer, pH 6.5, at 80°C for 10 min.
b Percentages of residual activity and V max are expressed relative to the wild type for each substrate.
FIG. 5. Influence of pH and temperature on the activity of the purified endo-␤-1,3-glucanase of P. furiosus. A, enzyme activity was measured at 80°C for 5 min, using laminarin as substrate, in 100 mM citrate-phosphate buffer (f) at pH 4 -7 and in 100 mM phosphate buffer (q) at pH 6 -8. 100% activity corresponds to 935 units/mg of protein. B, enzyme activity was measured in 100 mM phosphate buffer at pH 6.5 for 5 min, using laminarin as substrate. 100% activity corresponds to 1842 units/mg of protein. Each assay was performed with 0.68 g of protein/ml. nine 174 affected mostly V max , not K m . The results suggest that the methionine 174 residue may assist in catalysis as a neighboring group to the essential glutamate 175 and suggest a structural role of this residue in the constitution of the active site. However, it does not significantly contribute to specific substrate binding, as seen by the unchanged K m upon deletion. Moreover, a mutant B. macerans ␤-glucanase in which a methionine has been inserted in the active site region has been reported to be enzymatically inactive (50). These results suggest that further modifications are required to extend the substrate specificity of ␤-1,3-glucanases (for example, amino acids responsible for the binding of the different polysaccharide substrates). Ferrer et al. (23) noted that conserved regions of the ␤-glucanases family are rich in aromatic residues, tryptophan in particular. This residue was demonstrated to play a role in substrate binding of some cellulases (64). Furthermore, a limited number of tryptophan residues are invariant either in ␤-1,3-glucanases or in ␤-1,3-1,4-glucanases (in positions 46, 50, 89, 150, 154, 257, and 270), suggesting a possible function in ␤-glucanase substrate specificity of these residues. Moreover, Planas and co-workers (51) proposed, after site-directed mutagenesis on B. licheniformis ␤-1,3-1,4-glucanase, a possible role in substrate binding of two glutamate residues (in position 122 and 203), which are conserved only among ␤-1,3-1,4-glucanases. A better understanding of the basis of the ␤-1,3and ␤-1,3-1,4 ␤-glucanase substrate specificity awaits a detailed comparison of the three-dimensional structures of these two classes of enzymes and experimental verifications of the derived conclusions by protein engineering.
Previously, it was observed that P. furiosus is capable to degrade ␣-linked glucose polymers such as starch and glycogen by the concerted action of ␣-amylase, pullulanase, and ␣-glucosidase (65). Here, we have demonstrated that, in addition, P. furiosus is able to grow on ␤-linked glucose polymers. Two enzymes are involved in the hydrolysis of laminarin to glucose: the LamA-encoded extracellular endo-␤-1,3-glucanase and ␤glucosidase (CelB). The physiological substrate of the latter endo-␤-1,3-glucanase may be a ␤-1,3-linked carbohydrate component of the cell wall of a variety of marine organisms, such as eukaryotic algae (laminarin) or methanogenic archaea (pseudopeptidoglycan) (48). As it has been demonstrated in vitro, the LamA and CelB enzymes are anticipated to catalyze the hydrolysis of sugars polymers to glucose in a cooperative manner. The extracellular endo-␤-1,3-glucanase with high-level thermostability could function around the living area of P. furiosus, degrading the ␤-1,3-glucose polymer to smaller oligomers that are imported into the cell and hydrolyzed to glucose by the exo-␤-glycosidase (CelB). Thus, these two enzymes could start the catabolic pathway of P. furiosus growing on ␤-1,3-glucose polymer that could ressemble the natural substrate of the strain in in vivo conditions. Morever, the lamA gene is located near the ␤-glucosidase celB gene and two alcohol dehydrogenases (Fig. 1). 2 Clustering of the lamA and celB genes may be of functional significance. The regulation of the celB and lamA genes in P. furiosus is currently under investigation. 2