O-Fucosylation of thrombospondin-like repeats is required for processing of microneme protein 2 and for efficient host cell invasion by Toxoplasma gondii tachyzoites

Toxoplasma gondii is an intracellular parasite that causes disseminated infections that can produce neurological damage in fetuses and immunocompromised individuals. Microneme protein 2 (MIC2), a member of the thrombospondin-related anonymous protein (TRAP) family, is a secreted protein important for T. gondii motility, host cell attachment, invasion, and egress. MIC2 contains six thrombospondin type I repeats (TSRs) that are modified by C-mannose and O-fucose in Plasmodium spp. and mammals. Here, using MS analysis, we found that the four TSRs in T. gondii MIC2 with protein O-fucosyltransferase 2 (POFUT2) acceptor sites are modified by a dHexHex disaccharide, whereas Trp residues within three TSRs are also modified with C-mannose. Disruption of genes encoding either POFUT2 or the putative GDP–fucose transporter (NST2) resulted in loss of MIC2 O-fucosylation, as detected by an antibody against the GlcFuc disaccharide, and in markedly reduced cellular levels of MIC2. Furthermore, in 10–15% of the Δpofut2 or Δnst2 vacuoles, MIC2 accumulated earlier in the secretory pathway rather than localizing to micronemes. Dissemination of tachyzoites in human foreskin fibroblasts was reduced for these knockouts, which both exhibited defects in attachment to and invasion of host cells comparable with the Δmic2 phenotype. These results, indicating that O-fucosylation of TSRs is required for efficient processing of MIC2 and for normal parasite invasion, are consistent with the recent demonstration that Plasmodium falciparum Δpofut2 strain has decreased virulence and also support a conserved role for this glycosylation pathway in quality control of TSR-containing proteins in eukaryotes.

Toxoplasma gondii is a eukaryotic parasite that belongs to the Apicomplexa phylum, together with other medically relevant parasites, such as Plasmodium spp. and Cryptosporidium parvum. T. gondii, which has the ability to invade all warmblooded animals, causes transient, disseminated infections that can lead to neurological damage in immunocompromised individuals and developmental defects in fetuses (1,2). T. gondii replicates asexually in all of its hosts, with the exception of felids (cats), where the parasite also undergoes a sexual cycle, which concludes in production and shedding of infectious oocysts in the feces (3).
Because T. gondii is an obligate, intracellular pathogen, its virulence depends on the ability to invade host cells. The parasite has specialized secretory organelles, which localize at the apical end and whose content is sequentially secreted during the invasion process (4). Secretion of microneme proteins depends upon elevation of parasite calcium levels and is the first event upon parasite attachment (4,5).
Microneme protein 2 (MIC2) 4 is a member of the thrombospondin-related anonymous protein (TRAP) family (6). MIC2 is a type 1 membrane protein composed of an A/I von Willebrand domain, six thrombospondin-like repeats, and a short cytoplasmic tail (7). The A/I domain has been shown to be involved in recognition of host cells, possibly through binding to ICAM-1, heparin, and sulfated glycosaminoglycans (8 -10). MIC2 forms a hexameric complex with the MIC2-associated protein (M2AP) in the endoplasmic reticulum; together, they traffic to the micronemes and, upon secretion, to the apical cell surface (8,11). As host cell penetration concludes, the MIC2/M2AP complex relocates to the posterior end of the parasite and is released into the environment by cleavage of the C-terminal transmembrane helix that is catalyzed by the MPP1 protease (7,12).
Although knockout of the mic2 gene strongly affects motility and invasion, MIC2 is not essential for parasite viability. Tachyzoites lacking this protein still glide, attach to, and invade fibroblasts, albeit inefficiently (13). Numerous studies have shown that correct trafficking of the M2AP/ MIC2 complex to the micronemes is important for its function. Knockout of m2ap results in inefficient localization of MIC2 to the micronemes and defects in the parasite's ability to glide and invade (14). Cleavage-resistant mutations of m2ap, which affect protein maturation and consequently localization of the M2AP/MIC2 complex, also result in inefficient gliding and attachment (15,16).
Thrombospondin-like repeats, which are each about 60 amino acids long, are present in many extracellular proteins. TSRs have a conserved structure characterized by a tryptophan ladder composed of stacked Trp and arginine residues and a set of conserved cysteines that are involved in disulfide bridges (17). In metazoans, TSRs are glycosylated via two pathways: O-fucosylation by action of the protein O-fucosyltransferase 2 (POFUT2) and C-mannosylation by the C-mannosyltransferase DPY-19 (18,19). C-Man is transferred via an unusual carbon-carbon bond to the Trp on a WXXWXXC 1 sequence, where C 1 is the first conserved cysteine in the TSR (20). Plasmodium falciparum and T. gondii each encode for a DPY-19 orthologue that can transfer C-Man to the Trp residues in the conserved motif, both in vitro and in vivo (21).
POFUT2 transfers ␣-fucose to the hydroxyl group on Ser/ Thr residues in the consensus sequence C 1 X 2-3 (S/T)C 2 X 2 G, where C 1 and C 2 are the first two conserved cysteines (22). In metazoans, fucose is transferred on already folded TSR domains (23) and can be elongated by a ␤1,3-glucose by action of the glucosyltransferase B3GLCT (24). Mass spectrometry analyses of P. falciparum TRAP and circumsporozoite protein indicate that a hexose (Hex) residue elongates the fucose on Apicomplexa TSRs; this sugar may be glucose, but it has not yet been unequivocally identified (21,25).
TSRs glycosylation is carried out in the endoplasmic reticulum (22,26), and in studies performed in mammalian cell and Caenorhabditis elegans, defects in both C-mannosylation and O-fucosylation have been shown to affect protein stabilization and secretion, albeit with protein-to-protein variability (19,23,(27)(28)(29)(30)(31). A knockout of pofut2 is embryonically lethal in mice (31). The human recessive disorder Peter Plus syndrome is caused by mutations in the B3GLCT glycosyltransferase (23). Recently, a knockout of P. falciparum pofut2 showed that O-fucosylation of TSRs is required for efficient mosquito infection by ookinetes and for hepatocyte invasion by sporozoites (32). These phenotypes are due to defective folding/stabilization of the parasite TSR-containing proteins, such as TRAP and circumsporozoite protein, consistent with the observations made in metazoans and a potential role for O-fucosylation in efficient folding and/or stabilization of TSRs (23,32).
In this paper, we use MS to show that four of six TSRs of MIC2 are modified by O-fucose and that in addition to TSR5 (as shown by Hoppe et al. (25)), two other TSRs are modified with C-Man. We also identify the putative POFUT2 and GDPfucose transporter (NST2) and show that knockout of either pofut2 or nst2 results in loss of O-fucosylation of MIC2, defects in the protein stability and localization, and a decrease in the ability of parasites to invade host cells.

Four TSRs of MIC2 are modified by a dHex with or without Hex
Glycosylation on tachyzoite secreted proteins was analyzed as described (25). Briefly, secretion was induced with 1% ethanol (7), and the peptides resulting from reduction, alkylation, and trypsin digestion of the secreted protein fraction were analyzed by nano-LC-MS/MS using a Thermo Q Exactive quadrupole Orbitrap MS with low-energy CID. Following this discovery run, selected peptide species containing the O-fucosylation motif were further analyzed by higher-collision energy dissociation (HCD) fragmentation and by electron transfer dissociation (ETD), which allows fragmentation of the peptide backbone while preserving post-translational modifications (33).
The initial analysis identified numerous peptides from MIC2 that cover about 66% of the secreted sequence (7) (Fig. S1). In silico mining of the T. gondii predicted proteome indicated the possibility for detection of three additional TSR-containing proteins encoding the POFUT2 consensus motif: MIC14, TGGT1_209060, and TGGT1_223480 (Table S1). However, we did not observe any peptides from these three T. gondii proteins.
MIC2 has six contiguous TSRs. All six contain C-mannosylation sites, whereas only four (TSR1, -3, -4, and -5) have the consensus O-fucosylation motif (C 1 X 2-3 (S/T)C 2 X 2 G) (Fig. 1A). The targeted HCD and ETD experiments allowed localization of a dHexHex disaccharide on the predicted POFUT2 acceptor residues on MIC2 TSR1 and TSR4 and a dHex with or without Hex on TSR5 (25). TSR3 is also modified with a dHexHex, although the modification site could not be assigned (Table 1, Figs. 1-3, and Fig. S3). TSR6 lacks a consensus site for POFUT2 and is not modified by C-Man; TSR2 lacks an O-fucosylation consensus site and was not sampled. TSR3 and TSR4, in addition to the previously described TSR5 (25), are modified with C-Man. Last, whereas MIC2 contains four potential N-glycosylation sites, we observed peptides containing unmodified Asn at residues 463, 470, and 680, suggesting that these N-glycan sites are unoccupied (Fig. S1). The fourth potential N-glycosylation site was not observed.
A TSR1 semi-tryptic peptide, 282 SVSCDGSQIR 294 , modified with a dHex and a Hex, was observed as the [M ϩ 2H] 2ϩ ion at m/z 737.3218 (Table 1). ETD fragmentation on an LTQ-Orbitrap resulted in three product ions that carried both Hex and dHex: z9, z10, and y10 (Fig. 1B). No other dHex-and/or Hexcontaining product ions were observed. These observations allow assignment of Ser-285, the predicted POFUT2 acceptor site, as the glycosylated residue and indicate that the two sugars O-Fucosylation of MIC2 TSRs in T. gondii compose a disaccharide modifying this serine (22). It should be noted that this analytical technique cannot define the hexose monosaccharide substituting the dHex. The same peptide was also observed as a [M ϩ 2H] 2ϩ ion without any sugar modification at m/z 583.2670 (Table 1). Comparison of the extracted ion chromatograms for the two species suggests that the glycosylated version is the more abundant of the two (Fig. S2A).
For the MIC2 TSR3, we observed the semi-tryptic peptide 399 ITIPPTPPEWAAWSDCTVTCGGGNR 425 modified with a dHex and 3 Hex as a [M ϩ 3H] 3ϩ species at m/z 1125.8290 (Table 1). HCD fragmentation using a low collision energy set-ting (10 eV) resulted in the detection of triply charged product ions corresponding to loss of Hex from the precursor (m/z 1071.8176), loss of dHexHex (m/z 1023.1157), and subsequent loss of 120.04 Da, resulting from a cross-ring cleavage characteristic of C-mannose (m/z 983.1221) (Fig. 1C) (20). Increasing the collision energy to 15 eV resulted in the detection of the ion species observed at 10 eV plus the precursor minus Hex, dHexHex, and two Hex fragments originating from cross-ring cleavages (m/z 943.0975). These results are consistent with peptide modification with two C-Man residues and a dHexHex disaccharide on the POFUT2 site. Additionally, loss of the Hex Figure 1. MIC2 TSR1, -3, -4, and -5 are modified by dHexHex and TSR3, -4, and -5 are also C-mannosylated. A, amino acid sequences of the six TSR domains of MIC2. Cys resides are labeled in green, the O-fucosylation acceptor Ser/Thr is marked in red. C-Mannosylation sites are shown in blue. B, ETD of a semi-tryptic peptide from TSR1. The presence of the three product ions z9, z10, and y10 containing dHexHex identifies Ser-285, the predicted POFUT2 acceptor, as the glycosylated residue. C, HCD fragmentation of a TSR3 semi-tryptic peptide is consistent with modification by dHexHex disaccharide plus two C-mannoses. Collision energy of 10 eV (top) shows ion species corresponding to the precursor minus a Hex, a dHexHex, or minus dHexHex and 120.04 Da (broken green circle). Increasing the collision energy to 15 eV (bottom) allows detection of the precursor minus Hex, dHexHex, and two Hex Ϫ120.04 Da fragments. D, ion trap ETD of a semi-tryptic peptide from TSR4 identified the z7 product ion carrying both Hex and dHex, indicating Ser-485, the predicted POFUT2 acceptor site, as the residue modified by a dHexHex disaccharide. E, 10-eV HCD fragmentation of the Hex 2 dHex glycoform, m/z 1120.7058 (top), and the Hex 3 dHex ion species, m/z 1161.2106 (bottom), is shown. The most abundant ion, corresponding to the precursor minus the O-linked sugar, was the same for both species, consistent with the difference between the glycoforms being the Hex elongating the O-fucose and not one of the C-Man. Red triangle, fucose; green circle, mannose; broken green circle, C-Man cross-ring fragment; white circle, Hex; *, cysteine carbamidomethylation.

O-Fucosylation of MIC2 TSRs in T. gondii
and then the dHex is consistent with the dHex as the monosaccharide that is attached to the protein. We also observed a lower-abundance ion corresponding to loss of dHex from the precursor (m/z 1077.1379; Fig. 1C). This ion could indicate either a minor glycoform where the Hex is the monosaccharide attached to the protein or a rearrangement of the glycan during the MS analysis (34). Because rearrangement should be observed for other O-fucosylated TSRs, we analyzed tryptic peptides from human thrombospondin 1 (TSP1). HCD MS/MS of a semi-tryptic peptide from the TSR2 of TSP1, using a collision energy of 15 eV, resulted in a product ion ([M ϩ 2H] 2ϩ m/z 663.8168) corresponding to the precursor after loss of a dHex ( Fig. S3). This observation is consistent with the M-dHex ion resulting from rearrangement of the dHexHex. Confirmation of the presence of Hex residues on each of the two Trp in the WXXWXXC motif was obtained by HCD fragmentation using higher collision energies (20 and 25 eV), which resulted in almost complete elimination of the precursor ion (Fig. 2). In particular, detection of the doubly charged y13 and y13-NH 3 ions allowed positioning of one C-Man at the second Trp of the WXXWXXC motif, whereas the singly charged b11 was diagnostic of the presence of another C-Man on the first Trp of the motif. These assignments were supported by the detection of the doubly charged ions y19 (two intact Hex residues, m/z    (Table 1). ETD analysis of the smaller semi-tryptic peptide (m/z 586.7708) showed the presence of the z7 product ion carrying both Hex and dHex. This observation allowed assignment of Ser-485, the predicted POFUT2 acceptor site, as the residue modified by dHexHex (Fig. 1D). Additionally, HCD fragmentation using a low-collision energy setting (10 eV) of the [M ϩ 3H] 3ϩ species showed ions corresponding to the precursor after loss of an intact Hex (m/z 1377.2067), a Hex and dHex (m/z 1328.5223), or a dHexHex and a 120.04 Da from a Hex cross-ring cleavage (m/z 1288.5155) (Fig. S4). These results are consistent with modification of the Trp on the WXXC motif with one Hex and a dHexHex disaccharide modifying the Ofucosylation site. HCD fragmentation using higher collision energy (20 eV) allowed confirmation of Trp modification by a Hex upon detection of the sugar in the y-series ions only from y13 onward, both as singly and doubly charged species (Fig. 3). HCD fragmentation also identified a y7 ϩ dHexHex ion, consistent with the presence of the disaccharide on Ser-485. Neither additional glycoform nor the unmodified peptide were observed.
Last, multiple peptides containing the C-mannosylation and O-fucosylation sites were observed for MIC2 TSR5. Although

O-Fucosylation of MIC2 TSRs in T. gondii
tryptic cleavage rarely occurs when proline follows arginine, the fully tryptic peptide 533 PGEWAEWGECSVTCGDGVR 553 modified by dHexHex 2 was observed as a [M ϩ 2H] 2ϩ at m/z 1311.5304 and the semi-tryptic peptide with one missed cleavage 526 ACPVDERPGEWAEWGECSVTCGDGVR 553 also carrying dHexHex 2 as [M ϩ 3H] 3ϩ at m/z 1150.4752 (Table 1). HCD MS/MS for the glycopeptide at m/z 1311.5304 has been shown previously (25); it demonstrated that both Trp residues in the WXXWXXC motif are modified with Hex. The previously published HCD analysis also detected a y7 ϩ dHex ion, consistent with the presence of deoxyhexose on Thr-546 (25). In this study, we also observed the fully tryptic peptide 533 PGEWAEWGECSVTCGDGVR 553 as [M ϩ 3H] 3ϩ m/z 928.7054, consistent with its modification by dHex and three Hex residues. Additionally, we observed the tryptic peptide (one missed cleavage) 517  In conclusion, all four MIC2 TSRs with POFUT2 acceptor sites are modified by a dHexHex disaccharide, consistent with FucGlc, and TSR5 can also be modified by only a dHex. Furthermore, Trp residues on TSR3 and -4, in addition to the already described TSR5 (25), are modified with C-mannose.

Identification and gene disruption of T. gondii orthologues of host POFUT2 and GDP-fucose transporter
The T. gondii genome encodes for a putative POFUT2 (TGGT1_273550), which belongs to the CAZy GT68 family of glycosyltransferases that includes Plasmodium and human POFUT2 ( Fig. S5) (35). Three conserved motifs, which are shared with the members of the ␣1,2-, ␣1,6-, and O-FTs superfamily (black boxes), can be identified, including Motif I that forms part of the substrate binding site (36). A GT68-specific region (amino acids 229 -357) includes the catalytic glutamic acid and some of the residues involved in TSR recognition (gray boxes in Fig. S4) (36,37). T. gondii POFUT2 also has a hydrophobic N-terminal sequence (amino acids 1-180), which is absent from the other POFUT2s identified to date (Fig. S5). Using CRISPR/Cas9 gene editing (38) in the RH ⌬Ku80 strain, which is deficient in the nonhomologous end-joining DNA repair system (39), we added a sequence encoding a C-terminal 3xMYC tag to the endogenous pofut2 locus. Specifically, Cas9 was directed to excise the pofut2 gene 20 bp upstream of the stop codon, and an oligonucleotide, flanked by about 50 bp of homology sequence to the break site, was provided as template for the homologous recombination. (Fig. 4A and Table S2). Insertion of the 3xMYC tag at the correct locus was confirmed by PCR from genomic DNA extracted at 72 h post-electroporation. A reaction product was observed only when cells were electroplated with the CRISPR/Cas9 construct directing to the pofut2 locus and the 3xMYC recombination sequence ( Fig. 4B and Table S2). The parasites were analyzed by immunofluorescence at 24 h post-electroporation to look for MYC-positive vacuoles. T. gondii POFUT2-3xMYC has a similar distribution to P30HDEL-YFP (40) (Fig. 4C), showing that POFUT2 is expressed in tachyzoites and, for the most part, localizes to the endoplasmic reticulum, as expected (22).
Transport of the activated sugar GDP-Fuc from the cytosol to the lumen of the ER is required for POFUT2 activity. A BLASTP search, using the human Golgi GDP-Fuc transporter as template, identified a single putative GDP-sugar transporter, TGGT1_ 267730 or NST2. There are 10 predicted transmembrane helices (41) and conserved nucleotide and sugar binding motifs (black dashed boxes) at the C terminus (42) (Fig. S6).
Using CRISPR/Cas9 in the RH ⌬Ku80 strain, the coding regions of T. gondii pofut2 and nst2 were disrupted. Briefly, Cas9 was directed to excise each gene in the first and last exon. A cassette expressing mGFP, under the gra1 promoter (43) and flanked by about 30 bp of homology sequence to each break site, was provided as template for the homologous recombination ( Fig. 4D and Table S2). After selection for mGFP-positive cells, clones were obtained by limiting dilution. Integration at the correct locus was verified by diagnostic PCR for both ⌬pofut2  Table S2 for primer sequences). In both cases, PCR with locus-specific primers (Table S2) resulted in a lower-molecular weight band upon integration of the mGFP cassette. Additionally, a reaction product using a mGFP-specific reverse primer was observed only in the ⌬pofut2 and ⌬nst2 cell lines and not in the parental strain (Fig. 4, E and F).
Additionally, ⌬pofut2 was complemented by electroporation of a construct expressing T. gondii pofut2 cDNA fused to a C-terminal 3xMYC tag under the control of tubulin 5Ј-UTRs (ptubPOFUT2-3xMYC/sagCAT). Selection with chloramphenicol was used to isolate the parasites expressing POFUT2-3xMYC and immunofluorescence analysis showed that the resulting population is positive for anti-MYC, and the observed staining pattern is consistent with ER localization (Fig. 4G).

MIC2 is not O-fucosylated in ⌬pofut2 and ⌬nst2
To determine the glycosylation status of the mutants, we used an antibody against the disaccharide FucGlc. To generate the antibody, chickens were immunized with Glc-␤-1,3-Fuc-␣-KLH (16) as antigen ( Fig. 5A and supporting information), and the disaccharide-specific polyclonal IgY were purified from the antibody fraction via Glc-␤-1,3-Fuc-␣-agarose beads. To analyze the anti-GlcFuc IgY specificity, the disaccharide and the two monosaccharides (Fuc and Glc) were conjugated to BSA. As there is no evidence of O-Glc directly linked to proteins in T. gondii, we used only BSA-GlcFuc and BSA-Fuc for ELISA and Western blotting assessment of antibody specificity. Antibody titration by ELISA identified 1 g/ml as the concentration

O-Fucosylation of MIC2 TSRs in T. gondii
with the best signal-to-noise ratio ( Fig. 5B and Fig. S7). Western blot analysis also confirmed the antibody specificity for BSA-GlcFuc, although a minor reactivity to BSA-Fuc was also observed (Fig. 5C).
When total cell lysates from the parental strain and the O-fucosylation mutants were analyzed by Western blotting using the antibody against GlcFuc, a ␤-elimination-sensitive band at an apparent molecular mass of about 110 kDa was identified in WT lysate, but not in the ⌬pofut2 and ⌬nst2 lysates (Fig. 5D). Additionally, the anti-GlcFuc antibody did not bind to ⌬mic2 lysate, confirming that the band observed in WT is indeed MIC2 and that MIC2 TSRs are not being O-fucosylated in the two O-fucosylation mutants (Fig. 5D). These results also indicate that the dHexHex identified by MS is indeed GlcFuc. Furthermore, complementation of ⌬pofut2 with the T. gondii enzyme restored MIC2 reactivity against the anti-GlcFuc (Fig. 5G).
Using the fucose-specific Aleuria aurantia lectin (AAL), we have previously described O-fucosylated proteins at the nuclear periphery of T. gondii (44). To assess the role of TgPOFUT2 in nuclear O-fucosylation, we analyzed the mutant parasites by AAL immunofluorescence. No effect on AAL binding was observed upon knockout of pofut2, consistent with nuclear O-fucosylation being mediated by a different glycosyltransferase (Fig. S8).
Loss of O-fucosylation resulted in a decrease of more than 50% in cellular MIC2 levels in both mutants, as determined by Western blot analysis (Fig. 5, E and F). Additionally, analysis of cell lysate from ⌬pofut2 ϩ POFUT2 parasites indicates that complementation rescued the defect in MIC2 cellular levels (Fig. 5G). This result suggests that O-fucosylation may be important for protein folding or processing of MIC2, because nonfucosylated MIC2 is not being processed as efficiently as WT MIC2.

Absence of O-fucosylation results in defective MIC2 localization to the micronemes
Localization of MIC2 was analyzed by immunofluorescence microscopy. As shown in the left panel of Fig. 6A, 12-15% of A control reaction amplifying a fragment of the pofut2 ORF was also performed (P37 ϩ P38). C, IFA of RH ⌬Ku80 tachyzoites expressing pofut2 tagged at the C terminus with a 3xMYC tag and an ER marker (p30HDEL-YFP) shows partial co-localization. Scale bar, 2 m. D, schematic representation of the strategy used to generate the pofut2 and nst2 gene disruptions. Cas9 was directed to excise each gene in the first and last exon. An mGFP-expressing cassette was inserted in each locus. The primers used in E and F are marked by arrows. E and F, genomic DNA was extracted after a first enrichment for mGFP-positive cells (mixed population) and after the final cloning step (KO). PCR analyses show substitution of the WT ORF with the mGFP cassette in both strains. Mixed pop, mixed population. All primer sequences can be found in Table S2. G, ⌬pofut2 parasites were complemented by expression of T. gondii POFUT2 fused to a 3xMYC C-terminal tag. MYC staining by IFA is consistent with ER localization. Scale bar, 2 m.

O-Fucosylation of MIC2 TSRs in T. gondii
vacuoles in both ⌬pofut2 and ⌬nst2 show an accumulation of MIC2 to the early/mid-secretory pathway (about 15% of vacuoles for ⌬pofut2 and 12% for ⌬nst2; Fig. 6B). The same abnormal accumulation was observed for M2AP (Fig. 6A, middle), but not for AMA4 (Fig. 6, A (right) and B), a protein with no TSRs and no reported strong association with MIC2. These observations suggest that we are observing an effect specific to O-fucosylated proteins and not to all micronemal proteins. In both the ⌬pofut2 and ⌬nst2 strains, transiently expressed GRASP55-mRFP, a cis-Golgi marker (40), partially co-localizes with the fraction of MIC2 that accumulates in the early/midsecretory pathway (Fig. 7A). IFA also suggests that GRASP55 distribution is aberrant in these vacuoles, as it looks more diffused and unlike the observed cisternae-shaped structure observed in the parental strain (Fig. 7A). No co-localization was observed between MIC2 and the ER-resident protein P30HDEL-mCherry (Fig. 7B). Both the reduction of MIC2 levels and its defective localization are consistent with a role for O-fucosylation in protein folding and secretion, as has been described in humans and P. falciparum (23,32).

Phenotypic analyses show a defect in attachment and invasion
The genome-wide CRISPR/Cas9 screen that was performed in T. gondii (45) identified both pofut2 and nst2 as nonessential genes (phenotypic scores of Ϫ0.34 and ϩ1.23, respectively). The ability of the two O-fucosylation-deficient strains to disseminate was determined by assessing plaque formation on human foreskin fibroblast (HFF) monolayer. Here, we found that both ⌬pofut2 and ⌬nst2 displayed a 40% reduction in the number of plaques compared with the parental strain (Fig. 8, A  and B), whereas no difference between mutants and WT was

O-Fucosylation of MIC2 TSRs in T. gondii
observed in the average area of the plaques (Fig. S9). These observations are usually indicative of a defect in the parasite's ability to either invade or egress from the host cells.
Phenotypic assays were performed to analyze the knockouts' ability to attach, invade, and egress. ⌬pofut2 and ⌬nst2 were compared with the parental strain and the recently published ⌬mic2 (13), as the data presented here indicate that MIC2 is the most abundant O-fucosylated protein in tachyzoites and is incorrectly processed in both knockouts. Attachment and invasion were assessed via the previously described red/green assay

O-Fucosylation of MIC2 TSRs in T. gondii
( Fig. 8C) (14). Briefly, extracellular parasites were labeled with anti-SAG1, and after permeabilization, all parasites were labeled with anti-␤-tubulin. As a result, attached parasites were stained with both antibodies (red ϩ green) and invaded parasites only with anti-␤-tubulin (green). A significant reduction in the total number of parasites that attached to or invaded the host cells (HFF) was observed in all three knockout cell lines, compared with the RH ⌬ku80 strain (Fig. 8D). This phenotype was rescued when the ⌬pofut2 parasites were complemented with the endogenous enzyme (⌬pofut2 ϩ POFUT2) (Fig. 8E). Additionally, no statistically significant difference was observed between ⌬pofut2 or ⌬nst2 and ⌬mic2, suggesting that lack of O-fucosylation is sufficient to reproduce the attachment/invasion defect observed when MIC2 is not being synthesized (Table S3). Furthermore, there was no statistically significant difference between pofut2 and nst2 knockouts.
Egress was stimulated with the addition of the calcium ionophore A23178, as described under "Experimental procedures," and intact, permeabilized, or completely egressed parasitophorous vacuoles (PVs) were quantified (Fig. 9A). As shown in Fig. 9B and Table 2, all three knockouts had a significantly larger proportion of PVs that were just permeabilized, compared with the RH ⌬ku80 strain. However, the egress defect in ⌬mic2 was found to be significantly more severe than in either ⌬pofut2 or ⌬nst2 ( Table 2). The increased egress defect in the ⌬mic2 strain may explain the markedly reduced infectivity in culture of the ⌬mic2 strain, reported by Gras et al. (13), versus the more modest reduction in the ⌬pofut2 and ⌬nst2 strains shown here.

Discussion
MIC2 is a well-characterized T. gondii virulence factor. This study adds to our understanding of MIC2 structure and function by characterizing the glycosylation on its TSRs and describing the importance of O-fucosylation on MIC2 processing and, consequently, the parasite's ability to invade.
Mass spectrometry analysis, using both HCD and ETD, showed that, in MIC2, all four TSRs containing the O-fucosylation motif (TSR1, -3, -4, and -5) are modified by O-FucGlc. Two other TSRs (TSR3 and -4), in addition to TSR5 (25), are also modified with C-Man. TSR5 was observed in vivo in two glycoforms, indicating heterogeneity at the O-fucosylation site, which is modified with either Fuc or FucGlc. Although ETDbased fragmentation is a very effective technique to characterize glycan modifications and identify the glycosylated amino acids, it is not able to distinguish between isomeric sugars (e.g. , and invaded parasites are green. D, box plot for the red/green assay, comparing the invasion rate between parental lines and mutants (ratio of invaded to total parasites). E, box plot for the red/green assay, comparing the invasion rates between parental strain, ⌬pofut2, and the complemented parasites (⌬pofut2 ϩ POFUT2). Student's t test was used to compare the samples. and significant differences are marked: *, 0.05 Ͻ p Ͻ 0.01; **, p Ͻ 0.001; ***, p Ͻ 0.0005; ****, p Ͻ 0.00001. All p values are reported in Table S3. Scale bars, 5 m.

O-Fucosylation of MIC2 TSRs in T. gondii
glucose versus galactose). The Western blotting evidence that indicates the disaccharide is FucGlc is the binding by an antibody generated here against the Glc␤1,3Fuc disaccharide. Consistent with this observation, a putative B3GLCT, the enzyme that adds Glc to elongate the Fuc on TSRs, is also present in the T. gondii genome (TGGT1_239752).
MIC2 was the only one of four predicted POFUT2 substrates that was identified in our MS analysis of secreted proteins; this result is consistent with the previous report (25). Whereas it is possible that MIC2 is the only tachyzoite protein with TSRs modified by O-Fuc and C-Man, it is more likely that the failure to detect other targets was due to either their low abundance or lack of secretion. TGGT1_223480, for example, is predicted to have higher expression in unsporulated oocysts (47) and could be the protein responsible for the previously observed staining of oocyst walls by the fucose-specific AAL (44), provided that O-Fuc is not capped in this life stage. Eukaryotic POFUT2s have been described as soluble ER lumen proteins (22), and immunofluorescence after in situ tagging of T. gondii POFUT2 showed a pattern similar, although not identical, to the one observed for the lumenal ER marker. Furthermore, when an ectopic copy of T. gondii POFUT2, with a 3xMYC tag, was used to complement ⌬pofut2 parasites, this construct also showed ER localization. Taken together, these results suggest that the ER is the primary subcellular localization for POFUT2 in the parasite. However, in silico analyses suggested a different topology, as four putative transmembrane domains are predicted in the hydrophobic N-terminal region of T. gondii POFUT2, and additional experiments will be required to verify this prediction. Attempts at recombinantly expressing POFUT2 either plus or minus the N-terminal domain or with only the fourth transmembrane domain in CHO cells, as previously done for DPY19 (25), did not result in active protein (data not shown). Even in the absence of in vitro activity data, loss of O-fucosylation on MIC2 in the ⌬pofut2 strongly supports the model that this enzyme is the O-fucosyltransferase that modifies TSRs in the parasite. Additionally, a CRISPR/Cas9 screen directed to the glycosylation machinery of the parasite was published during the revision of this paper (48). Disruption of pofut2 in Gas-Pascual et al. (48) resulted in loss of the dHexHex disaccharide from the T. gondii ␤-eliminated glycan fraction, consistent with a role of this enzyme in the synthesis of O-FucGlc (48).
T. gondii is predicted to synthesize both GDP-Man and GDP-Fuc, but only one putative GDP-sugar transporter, NST2, can be identified in its genome. Consistent with this observation, the C-mannosyltransferase DPY-19 (25) utilizes Dol-P-Man as a sugar donor (26), and no putative Golgi mannosyl-or fucosyltransferases can be identified. Additionally, no putative POFUT1, the enzyme responsible for O-fucosylation of endothelial growth factor-like domains (49), is present in the parasite genome, even though T. gondii is predicted to encode for multiple EGF domain-containing proteins (50). The lack of O-fucosylation in ⌬nst2 parasites and the similar phenotype between ⌬pofut2 and ⌬nst2 mutants support the identification of NST2 as a T. gondii GDP-Fuc transporter and suggest that in  Table 2. Scale bars, 5 m.  (51)(52)(53). Studies on mammalian POFUT2 indicate that this enzyme recognizes already folded TSRs, and defects in its activity affect the folding dynamics or the stabilization of TSR-containing proteins (37,54). Our observations in T. gondii are consistent with this model. Although we detect nonfucosylated MIC2 that is correctly trafficked (and presumably folded), we also observe in a subset of vacuoles a clear accumulation of likely misfolded MIC2 in the early/mid-secretory pathway. Aberrant GRASP55 staining, which is also observed in this subpopulation of vacuoles, suggests that accumulation of misfolded MIC2 causes a disruption in the Golgi structure. Our results also suggest that the M2AP/MIC2 complex is not affected in either ⌬pofut2 or ⌬nst2, as we observed mislocalization of MIC2 and M2AP to the early/mid-secretory pathway in a statistically comparable number of vacuoles. This is unlike the ⌬mic2, where M2AP is redirected to the constitutive secretion pathway (13). Previous work showed that M2AP binds MIC2 TSR6 through its galectin-like domain, and structural studies indicated that the recognition is due to protein-protein, not carbohydrate-protein, interactions (16). Whereas MIC2 TSR6 contains a C-mannosylation motif, we observed it exclusively in its unglycosylated form, supporting the protein-protein interaction model.

Table 2 Comparison of egress phenotypes between WT and knockout cell lines analyzed in this study
Comparison between the two O-fucosylation-deficient strains generated in this study and the previously described ⌬mic2 (13) indicates that glycosylation of TSRs has the strongest effects on attachment and invasion (Fig. 10). This result suggests a role for MIC2 TSRs in the attachment and/or invasion processes, consistent with the known role of these domains in cell-cell interaction (17). These results are in agreement with the recently described pofut2 knockout in P. falciparum, which also resulted in reduced invasion efficiency by sporozoites (32). It has been shown previously that disruption of TgGAMA, a GPI-anchored microneme protein, resulted in a defective parasite attachment, causing a delayed invasion phenotype while not affecting parasite plaquing ability (55). This is similar to the phenotype described here upon disruption of TSRs O-fucosylation, suggesting that the defect we observe in both pofut2 and nst2 might be at the level of parasite attachment. Further experiments will be necessary to verify this hypothesis.
It should be noted that an independent study by Khurana et al. (56) also identified pofut2 as the enzyme responsible for TSRs O-fucosylation in T. gondii; however, in their hands, its knockout did not result in any detectable invasion phenotype or defect in the parasite plaquing ability. Consistently, in their report, MIC2 levels were close to those of the parental strain (54). The hypothesis of an off-target mutation being responsible for the phenotype reported here is not supported by the complementation data, as adding back of T. gondii POFUT2 rescued the attachment/invasion phenotype of ⌬pofut2 parasites and restored cellular MIC2 levels. Our strategy differed from that used by Khurana et al. (56) to generate the pofut2 knockout. Additionally, we used different assay conditions to assess parasite invasion. It is possible that a combination of these experimental divergences might be responsible for the contrasting phenotypes observed.
This work complements the recent studies that have looked at the role of fucosylation in T. gondii biology. Fucose has been described previously in this parasite as part of two uncommon nucleocytosolic glycosylation pathways: modification of the E3-ubiquitin ligase adaptor Skp1 by a fucose-containing pentasaccharide (57,58) and an O-fucosylation pathway that modifies Ser/Thr on proteins that accumulate at the nuclear periphery (44). In this study, we add a role for fucose in folding or stabilization of TSRs in T. gondii, a function conserved from Plasmodium to metazoans (23,31,32).

In silico analyses
Human POFUT2 (UniProt number Q9Y2G5-3) and GDPfucose transporter (UniProt number Q96A29-1) protein sequences were used as templates to mine the T. gondii genome (http://toxodb.org/toxo) 5 (47). The hits from these searches were confirmed by using the hits themselves as templates for searches on the NCBI BLASTP engine. Alignments were performed using Clustal Omega (59) and were colored by percentage identity and edited using Jalview (60).
To identify the putative POFUT2 protein acceptors, a protein motif search was performed on ToxoDB for C 1 X 2-3 (S/ T)C 2 X 2 G (47). The resulting hits were manually verified to con- Shown is a schematic representation of differences and similarities between ⌬mic2 and ⌬pofut2 and ⌬nst2. Disruption of O-fucosylation is sufficient to reproduce the attachment and invasion defects observed when MIC2 is not being synthesized. Conversely, the parasite ability to egress is much more compromised in the ⌬mic2 versus ⌬pofut2 and ⌬nst2. Dark red arrows indicate a stronger defect, whereas small light red arrows indicate a milder phenotype. N/A, not applicable.

O-Fucosylation of MIC2 TSRs in T. gondii
firm that the proteins had a predicted signal peptide and the motif was indeed part of a TSR. The identified proteins are listed in Table S1.

T. gondii culture and manipulation
Cell culture of T. gondii tachyzoites was performed as described previously (39,61). The ⌬mic2 cell line was a kind gift of Dr. Markus Meissner (Ludwig-Maximilians-University, Munich, Germany) (13). RH ⌬ku80 was used as parental strain for all T. gondii transgenic cell lines generated in this study (39).
To generate the transgenic cell lines, the required amount of DNA (see below) was electroporated by adapting the protocol described previously (45). Briefly, tachyzoites were washed in HHE buffer and resuspended in Cytomix to be 1.6 ϫ 10 7 /ml. Purified DNA that had been previously ethanol-precipitated was redissolved in Cytomix (supplemented with GSH, CaCl 2 , and ATP) and combined with 10 6 tachyzoites in a 2-mm gap BTX cuvette (BTX Harvard Apparatus). Electroporation was performed using the program X-014 on an Amaxa Nucleofactor II electroporator (Lonza).

CRISPR/Cas9-mediated gene disruption
The approach to generate the pofut2 (TGGT1_273550) and nst2 (TGGT1_267730) knockouts is described in Fig.  4D. The protospacers to direct Cas9 were cloned using oligonucleotides P24-25 (pofut2_Nterm), P26-27 (pofut2_Cterm), P28-29 (nst2_Nterm), and P30-31 (nst2_Cterm) ( Table S2). Oligonucleotides were annealed and phosphorylated, and the resulting dsDNA was cloned in the BsaI-digested pU6Universal plasmid (38) to generate the following plasmids: pU6_P2N, pU6_P2C, pU6_N2N, and pU6_N2C. To replace the gene of interest, the mGFP-expressing cassette from pDHFR-Luc-mGFP (43) (gra1 5Ј-UTRs-mGFP-gra2 3Ј-UTRs) was amplified by PCR using primers containing about 30 -40 bp of homology sequence to the double-stranded break sites (P20-21 and P22-23, Table S2) and cloned into pCR2.1TOPO (Invitrogen), generating pP2KO_mGFP and pN2KO_mGFP. The cassettes also contained blunt restriction sites (AfeI/BsrBI for pofut2 and StuI/SnaBI for nst2) to allow their isolation from plasmid DNA, without adding or removing bases to the homology sequences. DNA was purified from pP2KO_mGFP and pN2KO_mGFP, and the cassettes were isolated by restriction digestion and gel purification. About 20 g each of pU6 guide RNAs and at least a 5-fold molar excess of purified recombination cassette were used for each electroporation. Cells were recovered in 15-cm culture dishes (Corning), and mGFP-positive plaques were isolated and transferred to 96-well plates for cloning by limiting dilution. Two to three rounds of cloning were required to isolate clonal populations of mGFP-positive parasites. DNA was extracted before and after cloning using DNAzol (Invitrogen) according to the manufacturer's instructions. Insertion of the cassette in the correct locus was verified by PCR using primers P34, P36, and P39 (pofut2) or P32, P33, P34, and P41 (nst2) (Table S2).
To generate the complementation construct, total RNA was extracted from RH using TriReagent (Life Technologies, Inc.) according to the manufacturer's instructions and used for cDNA synthesis using Moloney murine leukemia virus retrotranscriptase and Oligo(dT)23VN primers (New England Biolabs). The POFUT2 ORF was amplified from the cDNA using primers P42 and P43 and cloned into the final vector using AvrII and BglII to obtain ptubPOFUT2-3xMYC/sagCAT. The original vector was a kind gift of Marc-Jan Gubbels (Boston College). About 20 g of the plasmid were linearized with NruI and electroporated in T. gondii ⌬pofut2. Parasites expressing POFUT2-3xMYC were selected with chloramphenicol.

In situ tagging of POFUT2
This approach is shown in Fig. 4A. Briefly, pU6_P2C was used to generate a Cas9-mediated double-stranded break near the stop codon of the pofut2 coding sequence. A 258-bp recombination sequence (O1 ; Table S2) was designed to include a 3xMYC tag, flanked at both sides by about 50 bp of homology sequence and blunt restriction enzymes (MscI/PvuII) to allow release from the plasmid (pUC57-P2tRO), and sent for synthesis (GenScript). Additionally, a synonymous point mutation was introduced in O1 to remove the Cas9 PAM site after recombination (mutated base in lowercase in Table S2) (38). About 20 g of pU6_P2C and a 25-fold molar excess of the O1 sequence were electroporated as described above in the presence or absence of 10 g of ptubP30HDEL/sagCAT as an endoplasmic reticulum marker (40). Parasites were then allowed to infect HFF monolayers on coverslips in 24-well plates for up to 72 h. Cells were fixed for immunofluorescence analysis at 24 h post-electroporation. DNA was extracted 72 h post-electroporation and used to verify insertion of the 3xMYC tag at the correct locus by PCR (primers P35, P37, P38, and P40).

Immunofluorescence analysis
Unless otherwise specified, intracellular tachyzoites were fixed in 4% paraformaldehyde (PFA) in phosphate buffer (PB) for 20 min at room temperature (RT). Permeabilization was performed in 0.25% Triton X-100 in PBS for 15 min at RT, and it was followed by blocking in 3% BSA in PBS for 1 h, at RT. ptubGRASP55-mRPF/sagCAT (40) and ptubP30HDEL-mCherry/sagCAT were a kind gifts of Marc-Jan Gubbels. Electroporation was performed as described above, using 20 g of plasmid, and cells were fixed 24 h post-electroporation. Primary antibodies were used at the following concentrations: mAb anti-MIC2 6D10, 1:500; rabbit anti-MIC2, 1:500; rabbit anti-AMA4, 1:1000; mouse anti-c-Myc, 9E10 (Developmental Studies Hybridoma Bank), 4 g/ml; and rabbit anti-M2AP, 1:500. Antibodies to MIC2, M2AP were kind gifts of Dr. Vern Carruthers (University of Michigan), whereas the antibody against AMA4 was a kind gift of Maryse Lebrun (UMR 5235 CNRS, Université de Montpellier). Goat Alexa Fluorconjugated anti-mouse and anti-rabbit antibodies (Molecular Probes) were used at a 1:800 dilution. AAL was purchased from Vector Laboratories and conjugated to Alexa Fluor 594 succinimidyl esters (Molecular Probes) following the manufacturer's instructions. The final conjugate (AAL-Alexa Fluor 594) was used at 1:250. Cells were labeled with 1 g/ml 4Ј,6-diamidino-2-phenylindole (DAPI) for 10 min at RT. Coverslips were mounted on glass slides using Vectashield (Vector Laboratories) as mounting medium and examined by deconvolution microscopy on a Zeiss AXIO inverted microscope with a Colibri LED. Images were collected at 0.2-m optical sections with a Hamamutsu Orca-R2 camera and deconvolved using

O-Fucosylation of MIC2 TSRs in T. gondii
ZEN software (Zeiss). Images were further processed, and single optical sections were selected with Fiji (62). When counting the number of vacuoles with mislocalized MIC2 or M2AP, cells were observed at a total magnification of ϫ1000, and 100 vacuoles/biological repeat were counted. The average Ϯ S.D. of three independent repeats is shown. A two-tailed, homoscedastic Student's t test was used to calculate the p values. Superresolution microscopy was performed on a Zeiss ELYRA microscope. Images were acquired with a ϫ63/1.4 numerical aperture oil immersion objective, 0.089-m z sections at RT, and processed for structured illumination using ZEN software. Single optical sections were selected using Fiji (62).

Affinity purification of polyclonal chicken antibody
Glc-␤-1,3-Fuc-␣-KLH (16) (see supporting information) was sent to Genway Biotech Inc. to generate a chicken antibody using standard protocols. Crude chicken IgY (50 ml at 10 mg/ml) were centrifuged at 5000 ϫ g for 5 min. The debris was removed, and the clear IgY was incubated with agitation overnight with the disaccharide agarose beads (see supporting information). The mixture was loaded on a column, and the flow-through fraction was collected. The column was washed with PBS buffer and eluted with 0.1 M glycine buffer, pH 2. The flow-through fraction was reincubated with the agarose beads, and elutions were collected twice more to ensure maximum yield of the GlcFuc antibody. The elutions were immediately neutralized with 1 M Tris-HCl, pH 9.0, pooled, and concentrated to 1 mg/ml using Amicon ultracentrifugal filters (EMD Millipore) (3000 molecular weight cut-off) (63).

Generation of BSA neoglycoproteins
The disaccharide (GlcFuc) or the monosaccharide (Fuc) with an azide linker group was reacted with the NHS-linker (12) (see supporting information) and BSA to generate the BSA neoglycoproteins, using the same method for generating KLH-GlcFuc (see supporting information, synthesis of compound 16). The products were purified by dialysis in distilled water for 24 h twice. The resulting BSA-GlcFuc and BSA-Fuc were concentrated to 1 mg/ml using Amicon Ultra centrifugal filters (3000 molecular weight cut-off).

Testing of polyclonal anti-GlcFuc IgY
For the ELISAs, BSA-GlcFuc, BSA-Fuc, and BSA were diluted at different concentrations in PBS supplemented with 1% BSA and 0.1% NaN 3 . Samples were incubated on an ELISA plate at 4°C overnight. Following blocking in PBST (PBS, pH 7.4, 0.05% Tween 20) with 10% BSA at RT for 1 h, the wells were incubated with 1 g/ml purified anti-GlcFuc antibody in PBST ϩ 10% BSA for 2 h. The secondary antibody (rabbit antichicken IgY, HRP-conjugated) was diluted 1:100,000 in blocking buffer and incubated for 2 h at RT. Signal was developed by using o-phenylenediamine dihydrochloride reagent and read at the wavelengths of 492 and 620 nm. For Western blotting, 0.5 g of protein/lane was loaded on an 8% SDS-polyacrylamide gel with 4% stacking, transferred onto nitrocellulose membranes, and blocked in blocking buffer (percentage milk in PBST) for 1 h at RT. Anti-GlcFuc antibody was diluted in blocking buffer to 1 g/ml and incubated for 1 h at RT. The secondary antibody (rabbit anti-chicken IgY, HRP-conjugated) was diluted 1:5000 in blocking buffer and incubated for 1 h at RT. Blots were developed using SuperSignal West Pico (Pierce).

Western blotting
For total cell lysate, extracellular tachyzoites were harvested by centrifugation, washed twice in PBS, and lysed in 1ϫ reducing SDS-PAGE loading buffer with an additional 0.1 M DTT. Lysates were heated for 10 min at 96°C, and about 5 ϫ 10 6 cell eq/lane were loaded on 8 -16% TGX gels (Life Technologies). PAGE-separated proteins were blotted on polyvinylidene difluoride, and the membranes were then blocked in 50 mM Tris-HCl, 0.15 M NaCl, 0.25% BSA, 0.05% Nonidet P-40, pH 7.4 (64). ␤-Elimination on blot was performed as described previously (65). Briefly, after blotting, the membrane was washed in PBS and incubated with rotation for 16 h in 55 mM NaOH at 40°C. After being rinsed in water, the membrane was blocked as described above. Both primary and secondary antibodies were diluted in blocking buffer as follows: mouse mAb anti-MIC2 6D10 (1:5000), mouse mAb anti-␣-tubulin (1:800) (Developmental Studies Hybridoma Bank), chicken anti-GlcFuc (1.1 g/ml), anti-mouse HRP-conjugated (Bio-Rad) (1:1000), and anti-chicken HRP (1:5000). Blots were developed by chemiluminescence (SuperSignal West Pico PLUS) using an ImageQuant LAS4000 imager (GE Healthcare). Quantification was performed using the ImageQuant TL software. The average of three biological repeats Ϯ S.D. is shown. A two-tailed, heteroscedastic Student's t test was used to calculate the p values (t.test function in Excel).

Glycopeptide analysis by nUPLC-MS/MS (HCD)
Secreted proteins were isolated and prepared for nano-ultraperformance liquid chromatography tandem mass spectrometry (nUPLC-MS/MS) analysis on a Thermo Q Exactive quadrupole Orbitrap MS as described previously (7,25). Briefly, 4 ϫ 10 10 tachyzoites were isolated and resuspended in Dulbecco's modified Eagle's medium with 1% ethanol. After removal of parasites by centrifugation, the supernatant was filtered and concentrated. About 110 g of total protein was precipitated in 0.1 M ammonium acetate in MeOH for at least 16 h at Ϫ20°C. The sample was washed, dried by speed vacuum (SpeedVac Plus, Savant), and resuspended in 50 mM ammonium bicarbonate,pH8.Theproteinswerethenreduced,alkylatedwithiodoacetamide, and digested with trypsin, and the resulting peptides were desalted on a silica C18 column (Nest Group). After speed vacuum drying, the sample was reconstituted in 99% water, 1% acetonitrile, 0.1% formic acid. For the initial discovery method, a 2-l aliquot was analyzed as described previously (25). Precursor ions assigned from the Mascot search as peptides containing the O-fucosylation peptide motif were analyzed by tar-

O-Fucosylation of MIC2 TSRs in T. gondii
lock masses. The full mass range scan event was followed by seven PRM scan events, each with a different normalized collision energy. The PRM scan events were recorded with 17,500 resolution at m/z 200, AGC target 1 ϫ 10 6 , 150-ms maximum injection time, 2 microscans/spectrum, and their first mass was fit to m/z 100. The isolation window was set to 2 m/z units (Th) with an isolation offset of 0.4. An inclusion list with the m/z and retention times of the ions of interest was loaded, and the inclusion list feature was set to "on." Ion dissociation/activation was achieved by quadrupole/beam-type collisionally activated dissociation or HCD. For each of the seven PRM scan events, a different normalized collision energy was used. The normalized collision energy was set from 10 to 40 eV by increments of 5 eV.

Glycopeptide analyses by nUPLC-MS/MS (ETD)
Precursor ions of most interest that had been identified in the initial HCD experiment were used for a targeted nUPLC-MS/MS ETD experiment. An inclusion list of m/z with retention times was used in the ETD-targeted experiment. Five-l aliquots of the sample were injected into a nanoAcquity-UPLC (Waters) equipped with reversed-phase columns (trap column, 5-m Symmetry C18, 180 m ϫ 20 mm; analytical column, 1.7-m BEH130 C18, 150 m ϫ 100 mm (both from Waters)) and separated as described before (25). The nano-UPLC was connected online to an LTQ-Orbitrap XL mass spectrometer (Thermo Scientific) equipped with a Triversa NanoMate (Advion) electrospray ionization source. The mass spectrometer was operated in the positive-ion mode. The MS and tandem MS data were acquired in automatic data-dependent "top 3" mode. The molecular ions were detected in the Orbitrap mass analyzer at a resolution of 30,000 at m/z 400, over the full scan range m/z 300 -2000, 1 microscan/spectrum, maximum injection time (ion accumulation time) of 500 ms with a target AGC of 500,000 ion population. The selected precursor masses were calibrated with background ions at m/z 371.1012, 391.2842, and 445.1200 as the lock masses. The top three most abundant ions with charge state higher than 2 in the survey MS scan were selected, using a 2-Da isolation window, and were fragmented by ETD in the linear ion trap (LTQ) mass analyzer. The fluoranthene radical anions were accumulated for a maximum time of 125 ms and AGC of 500,000 prior to the ETD reaction. The ETD activation time was 125 ms, with supplemental activation of 15 V. For m/z 737.3218 (2ϩ), the fragments were detected in the Orbitrap mass analyzer with 2 microscans/spectrum, maximum injection time of 700 ms with AGC of 200,000 ion population. For m/z 586.7708 (2ϩ), the fragments were detected in the LTQ mass analyzer with 3 microscans/spectrum, maximum injection time of 150 ms with AGC of 10,000. All MS data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the data set identifier PXD010622 (46).

Plaque assay
Host cell monolayers (HFF) on 6-well plates were infected with 250 parasites/well of either parental or knockout strains. Parasites were allowed to grow at 37°C, 5% CO 2 for 8 days. After washing in PBS, cells were fixed in ice-cold methanol at Ϫ20°C for at least 20 min and stained with Giemsa for 10 min.
After the cells were washed with double-distilled H 2 O and airdried, plates were imaged on an ImageQuant LAS400 system. Plaque areas were determined using the ImageQuant TL software. Plaque numbers shown are the average of four biological repeats Ϯ S.D. A two-tailed, homoscedastic Student's t test was used to calculate the p values (t.test function in Excel).

Attachment/invasion assay
This protocol was adapted from Huynh et al. (14). Briefly, HFF monolayers on a coverslip (24-well plate) were infected with 5 ϫ 10 6 tachyzoites/well from either parental or knockout strains. The plate was centrifuged for 5 min at 200 ϫ g and incubated for 30 min at 37°C. After washing with PBS to remove unattached parasites, the coverslips were fixed in 4% PFA in PB for 20 min on ice and blocked in 3% BSA/PBS for 1 h at RT. Extracellular (attached) parasites were labeled with mAb anti-SAG1 T4 1E5 1:300 (BEI Resources). Cells were then permeabilized (10 min, 0.25% Triton X-100/PBS) and blocked once more (3% BSA/PBS, 30 min at RT). All parasites (attached and invaded) were labeled with rabbit anti-␤-tubulin 1:1000 (this step was required as the parental strain does not express mGFP like the knockout strains analyzed in this study). Antimouse Alexa Fluor 594 and anti-rabbit Alexa Fluor 488 were used as secondary antibodies. Coverslips were mounted on glass slides using Prolong Diamond with DAPI (Molecular Probes) and examined on a Zeiss AXIO inverted microscope. Six randomly selected fields were imaged with a total magnification of ϫ400. Attached (red ϩ green) and invaded (green) parasites were counted, and the invasion rate was calculated. This is the ratio of invaded to total parasites. The data from four or five biological repeats are shown in Fig. 8D and from two biological repeats for Fig. 8E. A two-tailed, heteroscedastic Student's t test was used to calculate the p values (t.test function in Excel).

Egress assay
This protocol was adapted from Refs. 13 and 45. Briefly, HFF monolayers on coverslip (24-well plate) were infected with 1 ϫ 10 5 tachyzoites/well from either parental or knockout strains, and parasites were allowed to grow for 24 -28 h. To induce egress, cells were incubated for 5 min at 37°C with 2 M A23178 (Sigma) in prewarmed Dulbecco's modified Eagle's medium (no FBS). Coverslips were immediately fixed in 4% PFA in PB for 20 min on ice and blocked in 3% BSA/PBS for 1 h at RT. Labeling and imaging were performed as described for the invasion/attachment assay with the difference that 8 -10 fields were scored in each biological repeat. The average of three independent experiments Ϯ S.D. is shown. A two-tailed, heteroscedastic Student's t test was used to calculate the p values (t.test function in Excel).