Searching journal content for evolution (as phrase) in full text.

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  1. Cell Biology - Enzymology:
    • Andrew S Murray,
    • Fausto A Varela,
    • Thomas E Hyland,
    • Andrew J Schoenbeck,
    • Jordan M White,
    • Lauren M Tanabe,
    • Sokol V Todi,
    • and Karin List
    Phosphorylation of the type II transmembrane serine protease, TMPRSS13 in Hepatocyte Growth Factor Activator Inhibitor-1 and 2-mediated cell surface localization J. Biol. Chem. jbc.M117.775999. doi:10.1074/jbc.M117.775999
    ...evolution ~~~
  2. Membrane Biology:
    • Hiba Qasem Abdullah,
    • Michal Perach,
    • Nurit Livnat-Levanon,
    • and Oded Lewinson
    ATP binding and hydrolysis disrupts the high-affinity interaction between the heme ABC transporter HmuUV and its cognate substrate binding protein J. Biol. Chem. jbc.M117.779975. doi:10.1074/jbc.M117.779975
    ...: a phylogenetic and functional classification of ABC systems in living organisms. Res. Microbiol. 152, 211229 9. Davidson, A. L., Dassa, E., Orelle, C., and Chen, J. (2008) Structure, function, and evolution of bacterial ATP-binding cassette systems. Microbiol. Mol. Biol. Rev. 72, 317364 10. Moller, S. G ~~~
  3. Protein Structure and Folding:
    • Aron Broom,
    • Zachary Jacobi,
    • Kyle Trainor,
    • and Elizabeth M Meiering
    Computational tools help improve protein stability but with a solubility tradeoff J. Biol. Chem. jbc.M117.784165. doi:10.1074/jbc.M117.784165
    ...). Various experimental methods, including directed evolution (10) and deep sequencing (11, 12) are commonly used to improve protein stability in practice, but these are time consuming and costly (13). To allow simple and cost effective protein engineering, numerous computational tools have been developed ~~~
  4. Protein Structure and Folding - Molecular Bases of Disease:
    • Patrick Constantinescu,
    • Rebecca A Brown,
    • Amy R Wyatt,
    • Marie Ranson,
    • and Mark R Wilson
    Amorphous protein aggregates stimulate plasminogen activation, leading to release of cytotoxic fragments that are clients for extracellular chaperones J. Biol. Chem. jbc.M117.786657. doi:10.1074/jbc.M117.786657
    ...evolution ~~~
  5. Protein Structure and Folding - Molecular Bases of Disease:
    • Miguel Mompeán,
    • Valentina Romano,
    • David Pantoja-Uceda,
    • Cristiana Stuani,
    • Francisco E. Baralle,
    • Emanuele Buratti,
    • and Douglas V. Laurents
    Point mutations in the N-terminal domain of transactive response DNA-binding protein 43 kDa (TDP-43) compromise its stability, dimerization, and functions J. Biol. Chem. 2017 292: 11992-. doi:10.1074/jbc.M117.775965
    ...population of dimers. The NTD surface, shown supplemental Fig. S3B, features several exposed hydrophobic residues. Of them,Met-1, Val-57, Ile-60, Met-63, and Val-74 are discontinuous and are not conserved by evolution, whereas Ile-16, Pro-19, Leu-27, Ala-33, and Pro-36 are clustered near each other ~~~
  6. Microbiology - Bioenergetics:
    • Laurent Loiseau,
    • Cameron Fyfe,
    • Laurent Aussel,
    • Mahmoud Hajj Chehade,
    • Sara B. Hernández,
    • Bruno Faivre,
    • Djemel Hamdane,
    • Caroline Mellot-Draznieks,
    • Bérengère Rascalou,
    • Ludovic Pelosi,
    • Christophe Velours,
    • David Cornu,
    • Murielle Lombard,
    • Josep Casadesús,
    • Fabien Pierrel,
    • Marc Fontecave,
    • and Frédéric Barras
    The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ J. Biol. Chem. 2017 292: 11937-. doi:10.1074/jbc.M117.789164
    ...evolution . Genome Biol. Evol . 6 , 149 – 160 4. ↵ Schoepp-Cothenet , B. , Lieutaud , C. , Baymann , F. , Verméglio , A. , Friedrich , T. , Kramer , D. M. , and Nitschke , W. ( 2009 ) Menaquinone as pool quinone in a purple bacterium . Proc. Natl. Acad. Sci. U.S.A . 106 , 8549 – 8554 5. ↵ Ravcheev , ~~~
  7. Metabolism - Bioenergetics:
    • Xiao Guo,
    • Natalie M. Niemi,
    • Joshua J. Coon,
    • and David J. Pagliarini
    Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase J. Biol. Chem. 2017 292: 11751-. doi:10.1074/jbc.M117.787341
    ...throughout evolution. Although Saccharomyces cerevisiae is a pervasive model organism for investigating cellularmetabolism and its regulation by signaling processes, the phosphatase(s) responsible for activating the PDC in S. cerevisiae has not been conclusively defined. Here, using comparative mitochondrial ~~~
  8. Enzymology - Molecular Biophysics:
    • Moritz Senger,
    • Sven T. Stripp,
    • and Basem Soboh
    Proteolytic cleavage orchestrates cofactor insertion and protein assembly in [NiFe]-hydrogenase biosynthesis J. Biol. Chem. 2017 292: 11670-. doi:10.1074/jbc.M117.788125
    ...evolution of protein biocatalysts: navigating sequence space intelligently. Chem. Soc. Rev. 44, 1172–1239 4. Lill, R., and Mu¨hlenhoff, U. (2008) Maturation of iron-sulfur proteins in eukaryotes: mechanisms, connected processes, and diseases. Annu. Rev. Biochem. 77, 669–700 5. Böck, A., King, P.W., ~~~
  9. Gene Regulation:
    • Juan Wang,
    • Shasha Zhao,
    • Wei He,
    • Yun Wei,
    • Yang Zhang,
    • Henry Pegg,
    • Paul Shore,
    • Stefan G. E. Roberts,
    • and Wensheng Deng
    A transcription factor IIA-binding site differentially regulates RNA polymerase II-mediated transcription in a promoter context-dependent manner J. Biol. Chem. 2017 292: 11873-. doi:10.1074/jbc.M116.770412
    ...-related protein 7 gene; pol II, polymerase II; SELEX, systematic evolution of ligands by exponential enrichment. cros ARTICLE J. Biol. Chem. (2017) 292(28) 1187311885 11873 2017 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. Transcription factor TFIIA comprises ~~~
  10. DNA and Chromosomes - Enzymology:
    • Benjamin J. Manning and
    • Timur Yusufzai
    The ATP-dependent chromatin remodeling enzymes CHD6, CHD7, and CHD8 exhibit distinct nucleosome binding and remodeling activities J. Biol. Chem. 2017 292: 11927-. doi:10.1074/jbc.M117.779470
    .... Opin. Struct. Biol. 3, 419429 4. Eisen, J. A., Sweder, K. S., andHanawalt, P. C. (1995) Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions.Nucleic Acids Res. 23, 27152723 5. Flaus, A., Martin, D. M., Barton, G. J., and Owen-Hughes, T. (2006) Identification ~~~
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