During the proliferative phase, human endometrial epithelial cells and stromal cells (ESCs) increase in response to E
2, leading to a thickening of the stratum functionalis of the endometrium. After ovulation, under P
4 dominance, the endometrium, which is regulated by autocrine, paracrine, and transcription factors, transitions from the proliferative to the secretory phase (
4- Patel B.
- Elguero S.
- Thakore S.
- Dahoud W.
- Bedaiwy M.
- Mesiano S.
Role of nuclear progesterone receptor isoforms in uterine pathophysiology.
). The endometrial transition leads to spontaneous decidualization of human ESCs. Decidualization co-occurs with functional and morphological changes in human ESCs (
5- Gellersen B.
- Brosens J.J.
Cyclic decidualization of the human endometrium in reproductive health and failure.
).
Uterine natural killer (uNK) cells are the predominant leukocyte in normal human endometrium (
6- Nagler A.
- Lanier L.L.
- Cwirla S.
- Phillips J.H.
Comparative studies of human FcRIII-positive and negative natural killer cells.
). Approximately 70–80% of uNK cells are characterized as CD56
brightCD16
− (
7On the nature and function of human uterine granular lymphocytes.
). Activated uNK cells can produce angiogenic factors, which promote spiral artery remodeling, and secrete cytokines that direct the migration and invasion of the trophoblast by interaction with trophoblast surface antigens (
8- Jokhi P.P.
- King A.
- Sharkey A.M.
- Smith S.K.
- Loke Y.W.
Screening for cytokine messenger ribonucleic acids in purified human decidual lymphocyte populations by the reverse-transcriptase polymerase chain reaction.
,
9Natural killer cells in pregnancy and recurrent pregnancy loss: endocrine and immunologic perspectives.
,
10- Kalkunte S.S.
- Mselle T.F.
- Norris W.E.
- Wira C.R.
- Sentman C.L.
- Sharma S.
Vascular endothelial growth factor C facilitates immune tolerance and endovascular activity of human uterine NK cells at the maternal-fetal interface.
). Importantly, the uNK cells and other leukocytes in the endometrium do not express P
4 receptors (
11- Henderson T.A.
- Saunders P.T.
- Moffett-King A.
- Groome N.P.
- Critchley H.O.
Steroid receptor expression in uterine natural killer cells.
). The activation and survival of uNK cells have been associated with the decidual-specific factor, interleukin-15 (IL15), in the human endometrium (
12- Kitaya K.
- Yamaguchi T.
- Honjo H.
Central role of interleukin-15 in postovulatory recruitment of peripheral blood CD16(−) natural killer cells into human endometrium.
).
Previously, we showed that one transcription factor, heart and neural crest derivatives-expressed transcript 2 (
HAND2), was up-regulated by E
2 and a representative progestin, medroxyprogesterone (MPA), in a time- and dose-dependent manner for ESC decidualization (
13- Cho H.
- Okada H.
- Tsuzuki T.
- Nishigaki A.
- Yasuda K.
- Kanzaki H.
Progestin-induced heart and neural crest derivatives expressed transcript 2 is associated with fibulin-1 expression in human endometrial stromal cells.
). Originally, HAND2 was identified as a basic helix-loop-helix transcription factor for embryonic right ventricles (
14- Srivastava D.
- Thomas T.
- Lin Q.
- Kirby M.L.
- Brown D.
- Olson E.N.
Regulation of cardiac mesodermal and neural crest development by the bHLH transcription factor, dHAND.
,
15- Yamagishi H.
- Olson E.N.
- Srivastava D.
The basic helix-loop-helix transcription factor, dHAND, is required for vascular development.
). In human ESCs, silencing of
HAND2 reduced both the morphological differentiation and the decidual-specific factors, including prolactin, forkhead box O1A (
FOXO1A), interleukin-15 (
IL15), fibulin-1, and tissue inhibitor of metalloproteinase-3 (
16- Shindoh H.
- Okada H.
- Tsuzuki T.
- Nishigaki A.
- Kanzaki H.
Requirement of heart and neural crest derivatives-expressed transcript 2 during decidualization of human endometrial stromal cells in vitro.
). Therefore, it is conceivable that
IL15 transcription is directly or indirectly regulated by HAND2.
To the best of our knowledge, no studies have evaluated transcription factors directly affecting
IL15 in human ESCs. We have applied
in silico analysis here to identify HAND2 motifs (CHTCTGG) (
17- Boeva V.
- Louis-Brennetot C.
- Peltier A.
- Durand S.
- Pierre-Eugène C.
- Raynal V.
- Etchevers H.C.
- Thomas S.
- Lermine A.
- Daudigeos-Dubus E.
- Geoerger B.
- Orth M.F.
- Grünewald T.G.P.
- Diaz E.
- Ducos B.
- et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.
) and found candidate sequences in the upstream and intronic region of the human
IL15 locus. The present study aimed to examine whether HAND2 participates in
IL15 transcriptional regulation in human ESCs.
Discussion
This report is the first to clearly demonstrate that HAND2 is a transcription factor that directly regulates
IL15 expression in human ESCs. We have identified a CCTCTGG sequence in the proximal region of the human
IL15 gene as a putative HAND2 motif using ChIP-PCR analysis and a luciferase reporter assay, using a human
IL15 upstream region and its mutants in ESCs. Our results suggest a functional connection between HAND2 and this putative HAND2 motif (CCTCTGG) in regulating human
IL15 transcription. We did not find any functional association between FOXO1 and
IL15 expression as reported previously (
25- Vasquez Y.M.
- Mazur E.C.
- Li X.
- Kommagani R.
- Jiang L.
- Chen R.
- Lanz R.B.
- Kovanci E.
- Gibbons W.E.
- DeMayo F.J.
FOXO1 is required for binding of PR on IRF4, novel transcriptional regulator of endometrial stromal decidualization.
).
VISTA analysis showed no significant similar region between rodents and primates with a criterion of 70% per 100 nucleotides. Unlike the human endometrium, rodent endometrium does not induce thickening of the stratum functionalis without embryo implantation. In actuality, decidualization of the endometrium is under maternal control in a handful of species, which includes higher primates (humans, apes, and Old World monkeys), some bats, and the elephant shrew (
5- Gellersen B.
- Brosens J.J.
Cyclic decidualization of the human endometrium in reproductive health and failure.
). Therefore, the upstream regions are not conserved between rodents and primates, and whole transcriptional regulation of
IL15 might be distinct among them. However, because ClustalW multiple alignment indicated that the HAND2 motif in the upstream region of the
IL15 gene is well-conserved (
Fig. 3C), the relationship between HAND2 and
IL15 transcription in ESCs might be conserved even in rodents.
A chimeric motif is supposed to have been generated by connecting forward and backward sequences around the putative HAND2 motif in the deletion mutant. Further, the deletion mutant altered positional relations of all known and unknown motifs in the upstream region of the
IL15 gene. For instance, we previously found that nuclear receptor subfamily 6, group A, member 1 (NR6A1), a DNA-binding factor, down-regulates hypocretin expression through an 18-bp nuclear receptor response element (NurRE) in the upstream region of the hypocretin gene (
27- Tanaka S.
- Kodama T.
- Nonaka T.
- Toyoda H.
- Arai M.
- Fukazawa M.
- Honda Y.
- Honda M.
- Mignot E.
Transcriptional regulation of the hypocretin/orexin gene by NR6A1.).
). We then cloned a single copy or three copies of NurRE into the upstream region of the TATA box in pTAL-luc reporter plasmid to investigate whether the NurRE exerted transcriptional modulator activity (enhancer, silencer, or insulator). In the condition with the NR6A1 expression vector, three copies were surprisingly activated, although a single copy was repressed. This switching mode might be induced by a generated chimeric binding site connecting each NurRE to other motifs or the change with proximity of NurRE to the promoter. Therefore, we have examined the activities of not only a deletion mutant, but also a substitution mutant, to confirm that the putative HAND2 motif in the human
IL15 transcription functions appropriately in ESCs. CTG changed to GAC at −1623/−1625 (purine base to pyrimidine base or pyrimidine base to purine base), but the length from the transcription start site and locations of the other putative motifs might not differ in this substitution mutant. Among these examinations, both mutants showed no response against HAND2. Therefore, HAND2 could regulate
IL15 transcription via the putative HAND2 motif at −1628/−1622 in the upstream region of the
IL15 gene in ESCs.
A recent single-cell analysis reported that a subclass of ESCs express
IL15, ruling out
IL15 expression by all ESCs (
28- Vento-Tormo R.
- Efremova M.
- Botting R.A.
- Turco M.Y.
- Vento-Tormo M.
- Meyer K.B.
- Park J.-E.
- Stephenson E.
- Polański K.
- Goncalves A.
- Gardner L.
- Holmqvist S.
- Henriksson J.
- Zou A.
- Sharkey A.M.
- et al.
Single-cell reconstruction of the early maternal-fetal interface in humans.
). Therefore, two possibilities exist—either HAND2 transcription is different in each ESC, or HAND2 is expressed at a similar level in all ESCs, but the susceptibility (epigenetic alterations, such as methylation) of the
IL15 locus against HAND2 is different for each ESC. Our immunohistochemical results show that HAND2 is not expressed in all ESCs; therefore, HAND2 may be regulated by different mechanisms in each ESC. Interestingly, lack of expression of
IL15 might indicate no requirement of uNK around them, suggesting that a local prevalence of uNK cells could trigger
IL15 expression. HAVCR2 (also known as TIM3)-LGALS9, a factor associated with immune checkpoint, influences the uNK-ESC cell interaction (
28- Vento-Tormo R.
- Efremova M.
- Botting R.A.
- Turco M.Y.
- Vento-Tormo M.
- Meyer K.B.
- Park J.-E.
- Stephenson E.
- Polański K.
- Goncalves A.
- Gardner L.
- Holmqvist S.
- Henriksson J.
- Zou A.
- Sharkey A.M.
- et al.
Single-cell reconstruction of the early maternal-fetal interface in humans.
). HAVCR2, which is expressed on the surface of uNK cells, might affect ESCs through interacting with LGALS9 and various receptors on the surface of ESCs as seen in macrophage activation by TH1 cells by HAVCR2-LGALS9 interactions (
29- Jayaraman P.
- Sada-Ovalle I.
- Beladi S.
- Anderson A.C.
- Dardalhon V.
- Hotta C.
- Kuchroo V.K.
- Behar S.M.
Tim3 binding to galectin-9 stimulates antimicrobial immunity.
). We speculate that this interaction might affect
IL15 transcription directly or indirectly via HAND2 in ESCs. Therefore, in future studies, it is necessary to perform experiments in which the HAVCR2 peptide is supplemented to culture medium or using a HAVCR2-coated culture dish to investigate the response of ESC, HAND2, and IL15 following E
2 and MPA treatment.
We found the putative HAND2 motif, like the E-box motif, at position IVS1_16239/16245 in intron 1 of the
IL15 locus. Introns within 1 kbp from the transcription start site have been shown to affect gene expression as IME (
20- Mascarenhas D.
- Mettler I.J.
- Pierce D.A.
- Lowe H.W.
Intron-mediated enhancement of heterologous gene expression in maize.
,
30Intron-mediated regulation of gene expression.
). The IMEter algorithm showed that many introns stimulate gene expression near the 5′-end of a gene (
21- Rose A.B.
- Elfersi T.
- Parra G.
- Korf I.
Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.
,
31The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis.
,
32- Callis J.
- Fromm M.
- Walbot V.
Introns increase gene expression in cultured maize cells.
,
33- Jeong Y.M.
- Mun J.H.
- Lee I.
- Woo J.C.
- Hong C.B.
- Kim S.G.
Distinct roles of the first introns on the expression of Arabidopsis profilin gene family members.
,
34- Snowden K.C.
- Buchhholz W.G.
- Hall T.C.
Intron position affects expression from the tpi promoter in rice.
). However, our ChIP-PCR showed no binding of HAND2 at IVS1_16239/16245. Thus, the putative HAND2 motif at IVS1_16239/16245 found in an intron of the
IL15 locus might not play roles in IME in ESCs.
Intriguingly, it is well-known that HAND2 up-regulates the T-box family of transcription factors, such as
Tbx2 and
Tbx3, in the early limb bud mesenchyme (
22- Osterwalder M.
- Speziale D.
- Shoukry M.
- Mohan R.
- Ivanek R.
- Kohler M.
- Beisel C.
- Wen X.
- Scales S.J.
- Christoffels V.M.
- Visel A.
- Lopez-Rios J.
- Zeller R.
HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme.
). Because the
IL15 receptor is known to be regulated by T-box transcription factors (
23- Mackay L.K.
- Wynne-Jones E.
- Freestone D.
- Pellicci D.G.
- Mielke L.A.
- Newman D.M.
- Braun A.
- Masson F.
- Kallies A.
- Belz G.T.
- Carbone F.R.
T-box transcription factors combine with the cytokines TGF-β and IL-15 to control tissue-resident memory T cell fate.
), we speculated that HAND2 might regulate
IL15 responsiveness from both ligand and receptor via T-box families.
As a limitation of this study, primary human ESCs cannot be maintained over prolonged periods in cell culture while retaining the primary ESC phenotype. Therefore, CRISPR-Cas9 editing (
24- Cong L.
- Ran F.A.
- Cox D.
- Lin S.
- Barretto R.
- Habib N.
- Hsu P.D.
- Wu X.
- Jiang W.
- Marraffini L.A.
- Zhang F.
Multiplex genome engineering using CRISPR/Cas systems.
) of primary human ESCs has been challenging for researchers, as it is difficult to generate genome-edited cell lines with primary ESC phenotypes and evaluate whether identified results are based on primary ESCs or other differentiated cell types. Alternatively, immortalized human ESCs have been generated via oncogenic transformation (
35- Chapdelaine P.
- Kang J.
- Boucher-Kovalik S.
- Caron N.
- Tremblay J.P.
- Fortier M.A.
Decidualization and maintenance of a functional prostaglandin system in human endometrial cell lines following transformation with SV40 large T antigen.
) or prolongation of cell division by introducing human telomerase reverse transcriptase (
36- Barbier C.S.
- Becker K.A.
- Troester M.A.
- Kaufman D.G.
Expression of exogenous human telomerase in cultures of endometrial stromal cells does not alter their hormone responsiveness.
,
37- Krikun G.
- Mor G.
- Alvero A.
- Guller S.
- Schatz F.
- Sapi E.
- Rahman M.
- Caze R.
- Qumsiyeh M.
- Lockwood C.J.
A novel immortalized human endometrial stromal cell line with normal progestational response.
,
38- Samalecos A.
- Reimann K.
- Wittmann S.
- Schulte H.M.
- Brosens J.J.
- Bamberger A.M.
- Gellersen B.
Characterization of a novel telomerase-immortalized human endometrial stromal cell line, St-T1b.
,
39- Tamura K.
- Yoshie M.
- Hara T.
- Isaka K.
- Kogo H.
Involvement of stathmin in proliferation and differentiation of immortalized human endometrial stromal cells.
). These cell lines are very appealing, but the decidualization capacity and response to steroids have not been fully reported. Recently, a novel immortalized human ESC line, KC02-44D, has been established. This cell line is able to fulfill characteristics, such as decidualization capacity, similar to primary human ESCs (
40- Yuhki M.
- Kajitani T.
- Mizuno T.
- Aoki Y.
- Maruyama T.
Establishment of an immortalized human endometrial stromal cell line with functional responses to ovarian stimuli.
). Therefore, the KC02-44D cell line would provide a breakthrough in this research area.
In conclusion, we found that human IL15 transcription is directly regulated by HAND2 via a putative HAND2 motif in the upstream region of the human IL15 gene. Because up-regulation in HAND2 stimulation is relatively lower than that with E2 and MPA stimulation, HAND2 might regulate IL15 transcription in collaboration with other factors.
Experimental procedures
Ethics statement
This study was approved by the institutional review board of Kansai Medical University, and informed consent was obtained from each patient (protocol number 2006101). This study also abides by the Declaration of Helsinki principles.
Tissue collection
Human endometrial tissues were collected from 30 patients of 32–48 years of age with regular menstrual cycles. They underwent hysterectomies without preoperative hormonal therapy. Histological examination of the uteri showed benign tumors, such as myoma. ESCs were immediately purified from endometrial tissues as described below.
qPCR
Total RNA was isolated from each human endometrium (8 from proliferation phase, 12 from secretory phase) using the RNeasy Mini kit (Qiagen, Venlo, The Netherlands). Single-strand cDNA was synthesized with a ReverTra Ace qPCR RT master mix with gDNA remover (TOYOBO, Osaka, Japan). The mRNA expression levels were determined using qPCR on a Roter-Gene Q platform (Qiagen) using Thunderbird qPCR mix (TOYOBO) and the gene-specific primers listed in
Table S1. Relative target gene expression levels were evaluated by the 2
−ΔΔCt method (
41- Livak K.J.
- Schmittgen T.D.
Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method.
) using EF1a as an internal control (
13- Cho H.
- Okada H.
- Tsuzuki T.
- Nishigaki A.
- Yasuda K.
- Kanzaki H.
Progestin-induced heart and neural crest derivatives expressed transcript 2 is associated with fibulin-1 expression in human endometrial stromal cells.
).
Immunohistochemical staining for HAND2
The formalin-fixed paraffin-embedded tissues were cut into 3-µm-thick sections. The sections were then deparaffinized, rehydrated, and boiled for 10 min in antigen retrieval buffer (10 m
m sodium citrate, pH 6.0). After cooling for 25 min at room temperature, the tissues were incubated with 3% hydrogen peroxidase for 10 min to inactivate endogenous peroxidases. After washing with distilled water, the sections were incubated with goat dHAND antibody (M-19) (catalog no. sc-9409, Santa Cruz Biotechnology, Inc., Dallas, TX, USA) (
17- Boeva V.
- Louis-Brennetot C.
- Peltier A.
- Durand S.
- Pierre-Eugène C.
- Raynal V.
- Etchevers H.C.
- Thomas S.
- Lermine A.
- Daudigeos-Dubus E.
- Geoerger B.
- Orth M.F.
- Grünewald T.G.P.
- Diaz E.
- Ducos B.
- et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.
) (1:500 in TBS, 0.1% Tween 20; sc-9409) overnight at 4 °C and were then incubated with N-Histofine Simple Stain MAX PO (G) (Nichirei Bioscience Inc., Tokyo, Japan) for 30 min according to the manufacturer’s protocol. After staining with DAB chromogen for 10 min, the sections were counterstained with hematoxylin. Bright-field images were captured with an Eclipse E-1000M digital camera (Nikon, Tokyo, Japan).
RNAscope for IL15 and HAND2
RNA in situ hybridization for IL15 and HAND2 was performed using an RNAscope 2.5 HD Reagent Kit-BROWN or RNAscope 2-plex Reagent Kit (Advanced Cell Diagnostics, Inc., Newark, CA, USA). Briefly, 5-μm-thick formalin-fixed paraffin-embedded sections were mounted onto Superfrost Plus microscope slides (Thermo Fisher Scientific, Waltham, MA, USA), baked, and deparaffinized. After incubation with hydrogen peroxidase, the sections were boiled in the Target Retrieval Reagents solution for 15 min and were treated with Protease Plus. They were then hybridized with four RNAscope probes, namely RNAscope Probe-Hs-IL15-C1, RNAscope Probe-Hs-HAND2-C2, RNAscope Positive Control Probe-Hs-PPIB, and RNAscope Negative Control Probe-DapB (Advanced Cell Diagnostics). A sequential signal amplification was performed with six or 10 serial amplifications. After the final amplification, DAB, FastRed, or FastGreen chromogenic detection was performed. They were counterstained with 50% Gill’s hematoxylin. Bright-field images were captured with an Eclipse E-1000M digital camera.
Culture of human ESCs
The standard enzyme digestion method described previously was used to purify human ESCs. Purified ESCs were cultured in phenol red–free Dulbecco’s modified Eagle’s medium/F-12 (Thermo Fisher Scientific) containing 10% dextran-coated charcoal-stripped fetal calf serum, 100 IU/ml penicillin, 100 μg/ml streptomycin, and 2 mmol/liter GlutaMAX (Thermo Fisher Scientific), to remove the effect of endogenous steroid hormones, at 37 °C under a humidified atmosphere of 5% CO
2 in air. Culture medium was changed every 3 days. ESCs were used for each experiment when the cells became nearly confluent. Vimentin-positive cells in confluent ESCs were detected at a rate of >99% by immunohistochemical analysis, as described previously (
42- Okada H.
- Nakajima T.
- Yoshimura T.
- Yasuda K.
- Kanzaki H.
The inhibitory effect of dienogest, a synthetic steroid, on the growth of human endometrial stromal cells in vitro.
).
Expression vectors and reporter plasmids
The firefly luciferase–encoding reporter plasmids pGL4.10[luc2] and pGL4.74[hRluc/TK] were purchased from Promega (Madison, WI, USA). The pGL4.74[hRluc/TK], which encodes
Renilla luciferase, was used as an internal control for transfection efficiency. The 1,867-bp upstream region of the human
IL15 transcription start site was amplified with KOD Fx, hIL15_−1867F_KpnI (5′-CGG
GGTACCtgccttaagttcaccctacaagt-3′; the KpnI site is underlined) and hIL15_+1R_XhoI (5′-CCG
CTCGAGcccctggcgaaaagaaaagtg-3′; the XhoI site is underlined). The PCR products were cloned into pGL4.10[luc2] (IL15ups/pGL4.10). The deletion mutant ΔH2_motif/pGL4.10, which contains an internal deletion at −1628/−1622 within the IL15ups/pGL4.10, was generated using site-directed mutagenesis and hIL15_−1629R_P and hIL15_−1621F_forDEL_P phosphorylated primers (
Table S1). The deletion mutant ΔF1_motif/pGL4.10, which contains an internal deletion at −1131/−1137 within the IL15ups/pGL4.10, was generated using site-directed mutagenesis and hIL15_−1138R+P and hIL15_−1130FforDEL+P phosphorylated primers (
Table S1). Nucleotide substitution reporter CTGtoGAC/pGL4.10 at −1623/−1625 was generated using site-directed mutagenesis with hIL15_−1629R_P and hIL15_−1628F (CTG>GAC)_P phosphorylated primers, and F1_substitution/pGL4.10 at −1132/−1137 was generated using site-directed mutagenesis with hIL15_−1138R+P and hIL15_−1137FforSubsti+P (
Table S1). Substituted nucleotides are indicated as
red characters in
Table S1.
The expression vector, pIRES2-AcGFP1, was purchased from Takara Bio USA, Inc. (Mountain View, CA, USA). Human HAND2 open reading frame was subcloned into pIRES2-AcGFP1 at EcoRI and BamHI sites (HAND2/pIRES2). Human FOXO1 cDNA was subcloned into pcDNA3-FLAG vector (FOXO1/pcDNA3).
All constructs were confirmed to have no substitutional mutation, no insertion, and no deletion by sequencing analysis except for mutagenesis regions with a BigDye terminator cycle sequencing reaction kit (Applied Biosystems, Foster City, CA, USA) and an ABI PRISM 3100 Genetic Analyzer (Applied Biosystems). Both strands were read with sequence primers.
ChIP-PCR
ChIP-PCR was conducted according to a method reported previously (
27- Tanaka S.
- Kodama T.
- Nonaka T.
- Toyoda H.
- Arai M.
- Fukazawa M.
- Honda Y.
- Honda M.
- Mignot E.
Transcriptional regulation of the hypocretin/orexin gene by NR6A1.).
,
43- Tanaka S.
- Honda Y.
- Takaku S.
- Koike T.
- Oe S.
- Hirahara Y.
- Yoshida T.
- Takizawa N.
- Takamori Y.
- Kurokawa K.
- Kodama T.
- Yamada H.
Involvement of PLAGL1/ZAC1 in hypocretin/orexin transcription.
). Briefly, ESCs were treated with E
2 (10
−8 mol/liter) and MPA (10
−7 mol/liter) for 12 days. ESCs were then cross-linked with 1% formaldehyde for 10 min at room temperature; a final concentration of 0.125
m glycine was added to block further cross-linking. Tissues were washed twice with ice-cold PBS, and a crude nuclear extract was prepared. To obtain digested genomic DNA, ranging between 150 and 900 bp, the nuclear extract was incubated with micrococcal nuclease (Cell Signaling Technology, Inc., Tokyo, Japan) for 20 min at 37 °C. The size of the DNA fragments was confirmed by gel electrophoresis following treatment with RNase I for 30 min at 37 °C and Proteinase K for 2 h at 65 °C. The lysate was sonicated at 43 kHz 10 times (20 s/sonication) at 4 °C and centrifuged, and the obtained supernatant was diluted in ChIP buffer (Cell Signaling Technology) overnight at 4 °C on a wheel rotator with either 2 μg of goat dHAND antibody (M-19) (catalog no. sc-9409, Santa Cruz Biotechnology, Inc.) (
17- Boeva V.
- Louis-Brennetot C.
- Peltier A.
- Durand S.
- Pierre-Eugène C.
- Raynal V.
- Etchevers H.C.
- Thomas S.
- Lermine A.
- Daudigeos-Dubus E.
- Geoerger B.
- Orth M.F.
- Grünewald T.G.P.
- Diaz E.
- Ducos B.
- et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.
) to capture the HAND2 protein, 1:100 FoxO1 (C29H4) rabbit mAb (catalog no. 2880, Cell Signaling Technology) to capture the FOXO1 protein, 1:50 histone H3 (D2B12) XP® rabbit mAb (catalog no. 4620, Cell Signaling Technology) as a positive control, or 2 μg of normal rabbit IgG (catalog no. 2729, Cell Signaling Technology) as a negative control. Samples were then incubated with Protein G–agarose beads for 2 h at 4 °C. Beads were washed with low- and high-salt wash buffers, and DNA templates for PCR were purified from the resulting DNA-protein complexes. ChIP-PCR analysis was performed using KOD plus DNA polymerase (Toyobo Life Sciences), primers (
Table S1), and a thermal cycler, with the following settings: one cycle at 95 °C for 5 min, followed by 35 cycles of denaturation at 94 °C for 30 s, annealing at 58 °C for 30 s, and extension at 68 °C for 30 s. Further, ChIP-qPCR was used to determine the relative levels of transcription factor recruitments, and the ratio of IP DNA to the 2% input DNA sample (%
INPUT) was calculated.
Luciferase reporter assay
Human ESCs were seeded into 24-well cell culture plates at a density of 2.5 × 105/well. Two types of luciferase plasmids were co-transfected with LipofectamineTM 3000 transfection reagent (Thermo Fisher Scientific) after pretreatment with E2 (10−8 mol/liter) and MPA (10−7 mol/liter) the day before, or two types of luciferase plasmids and one expression vector were co-transfected according to the manufacturer’s protocol. The following amounts of co-transfected plasmids and vectors were placed in each well: 200 ng of firefly luciferase–encoding reporter plasmid (pGL4.10, IL15ups/pGL4.10 or IL15ups_mutants/pGL4.10), 20 ng of Renilla luciferase-encoding internal control plasmid (pGL4.74), and 200 ng of expression vectors (pIRES2-AcGFP1, HAND2/pIRES2, pcDNA3-FLAG, or FOXO1/pcDNA3). Approximately 48 h after transfection, ESCs were lysed with lysis buffer (100 µl/well), and 20 µl of cell lysate was transferred to an OptiPlate-96 96-well microplate (SUMILON, Tokyo, Japan). Thereafter, firefly luciferase luminescence from the pGL4.10 plasmids and Renilla luciferase luminescence from the pGL4.74 plasmids were sequentially measured in duplicate using a PicaGene dual sea pansy luminescence kit (TOYO INK CO. Ltd., Chuo-ku, Tokyo, Japan) and the 2030 ARVO X multilabel reader (PerkinElmer Japan Co. Ltd., Yokohama, Japan) according to the manufacturer’s protocol. Relative luciferase activity per well was calculated by dividing firefly luciferase luminescence by Renilla luciferase luminescence. Relative luciferase activity was standardized using the corresponding control condition, which was transfected with pGL4.10 plasmid alone or co-transfected with a pGL4.10 plasmid and a mock vector (pIRES2-AcGFP1 or FOXO1/pcDNA3). Activity levels were expressed as the mean of at least six independent experiments ± S.D. and S.E.
Immunoblot analysis
HAND2 and FOXO1 proteins were confirmed in ESCs using immunoblot analysis after transfection. Total soluble proteins were extracted from total cell lysates in lysis buffer containing mammalian protein extraction reagent (Thermo Fisher Scientific) and protease inhibitor mixture (Nacalai Tesque, Osaka, Japan). Protein samples, heated for 5 min in SDS sample buffer, were loaded onto 7.5% Mini-PROTEAN TGX precast gel (Bio-Rad). They were then electrotransferred to immunoblot polyvinylidene difluoride membranes (Bio-Rad), and blocked with Blocking One (Nacalai Tesque) for 1 h and then incubated with goat dHAND antibody (M-19) (1:200), FoxO1 rabbit mAb (C29H4) (1:1,000), or mouse monoclonal β-actin antibody (1:5,000; AC-74, Sigma–Aldrich, Tokyo, Japan) in TBS, 0.1% Tween 20, containing 5% Blocking One at 4 °C overnight. Donkey anti-goat IgG peroxidase–linked antibody (1:5,000; sc-2020, Santa Cruz Biotechnology, Inc.), goat peroxidase-labeled anti-rabbit IgG (H + L) (1:5,000; PI-1000, Vector Laboratories), or sheep anti-mouse IgG peroxidase–linked antibody (1:10,000; NA931, GE Healthcare) were respectively used as secondary antibodies. Immune complexes were visualized using ECL Prime Western blotting detection reagent (GE Healthcare). The bands were detected using LAS 4000 (GE Healthcare). After FOXO1 transfection, we also detected FOXO1 proteins among the immunoprecipitated proteins by using FoxO1 rabbit mAb (C29H4) and immunoprecipitation kit (Protein G) (Sigma–Aldrich) according to the manufacturer’s instructions.
Statistical analyses
Normal distribution was determined using the Shapiro–Wilk normality test. Comparisons between HAND2 and IL15 expression in the proliferative and secretory phase were performed using Student’s t test. Correlation between HAND2 and IL15 expression was analyzed using Spearman’s rank correlation coefficient. Certain groups in the luciferase reporter assay were not normally distributed. Therefore, we employed an ANOVA with Tukey’s multiple-comparison test for normal distribution or a nonparametric Steel–Dwass multiple-comparison test for nonnormal distribution. All values were two-sided with statistical significance set at 0.05. Statistical analyses were performed using IBM SPSS Statistics version 21.0 (IBM Corp., Armonk, NY, USA).
Article info
Publication history
Published online: May 22, 2020
Received in revised form:
May 18,
2020
Received:
January 22,
2020
Edited by Peter Cresswell
Footnotes
This article contains supporting information.
Author contributions—H. M., S. T., and H. O. conceptualization; H. M., S. T., T. T.-N., T. K., M. K.-K., N. K., Y. Hisamatsu, H. T., Y. Hashimoto, and H. O. resources; H. M. and S. T. data curation; H. M. and S. T. formal analysis; H. M., S. T., and H. O. validation; H. M. and S. T. investigation; H. M. and S. T. visualization; H. M. and S. T. methodology; H. M. and S. T. writing-original draft; H. M., S. T., and H. O. project administration; S. T. software; S. T. and H. O. funding acquisition; S. T., T. T.-N., T. K., M. K.-K., N. K., Y. Hisamatsu, H. T., Y. Hashimoto, M. K., and H. O. writing-review and editing; M. K. and H. O. supervision.
Funding and additional information—This work was supported by Japan Society for the Promotion of Science (JSPS) KAKENHI Grants 17K11260 (to H. O.) and 19K06891 (to S. T.) and the Takeda Science Foundation (to S. T.). The agency had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Conflict of interest—The authors declare that they have no conflicts of interest with the contents of this article.
Abbreviations—The abbreviations used are: E2
estradiol
P4progesterone
ESCendometrial stromal cell
uNKuterine natural killer
IL15interleukin 15
HAND2heart– and neural crest derivatives–expressed transcript 2
MPAmedroxyprogesterone
qPCRquantitative PCR
IVSintervening sequence
IMEintron-mediated enhancement
NurREnuclear receptor response element
ANOVAanalysis of variance.
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© 2020 Murata et al.