Introduction
Dopaminergic neurons in the mammalian central nervous system (CNS)
2The abbreviations used are:
CNS
central nervous system
PD
Parkinson's disease
qPCR
quantitative RT-PCR
TH
tyrosine hydroxylase
REST
RE1-silencing transcription factor
NRSF
neuron-restrictive silencer factor
CREB
cAMP-response element-binding protein
CBP
CREB-binding protein
DN-REST
dominant-negative REST
CAD
cath.-a-differentiated
LUHMES
Lund human mesencephalic
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
EV
empty vector
Con
control
PI
propidium iodide
MTT
3,4,5-dimethylthiazol-2,5-diphenyltetrazolium bromide
TMRE
tetramethylrhodamine ethyl ester
CM-H
2DCFDA
chloromethyl derivative of 2′,7′-dichlorodihydrofluorescein diacetate
MDA
malondialdehyde
EMSA
electrophoretic mobility-shift assay
DAPA
DNA affinity purification assay
ANOVA
analysis of variance
co-IP
co-immunoprecipitation
MPP
+1-methyl-4-phenylpyridinium
HAT
histone acetyltransferase
HDAC
histone deacetylase
DMEM
Dulbecco's modified Eagle's medium
HRP
horseradish peroxidase
SNpc
substantia nigra pars compacta
MPTP
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine
AD
Alzheimer's disease
ROS
reactive oxygen species
ARE
antioxidant-response element
TNF-α
tumor necrosis factor-α
IL
interleukin
IFN
interferon
cKO
conditional knockout.
(
1- Chinta S.J.
- Andersen J.K.
Dopaminergic neurons.
) regulate a variety of brain functions, including voluntary movement and a broad array of behavioral processes, such as mood, reward, addiction, and stress (
2Dopamine neurons and their role in reward mechanisms.
). The loss of dopaminergic neurons occurs naturally within the aging process, but their widespread loss is associated with neurological disorders, such as Parkinson's disease (PD) and manganism (
3- Bernheimer H.
- Birkmayer W.
- Hornykiewicz O.
- Jellinger K.
- Seitelberger F.
Brain dopamine and the syndromes of Parkinson and Huntington. Clinical, morphological and neurochemical correlations.
). Although some studies have reported that mitochondrial dysfunction, oxidative stress, neuroinflammation, transcriptional repression, and dysregulation of the dopamine synthesis enzyme tyrosine hydroxylase (TH) are involved in dopaminergic neuronal death, the mechanisms are not completely understood. TH is the rate-limiting enzyme in dopamine synthesis that is highly expressed in the substantia nigra pars compacta (SNpc), ventral tegmental area, hypothalamus, and brainstem (
4- Coulon J.F.
- Biguet N.F.
- Cavoy A.
- Delacour J.
- Mallet J.
- David J.C.
Gene expression of tyrosine hydroxylase in the developing fetal brain.
,
5- Berod A.
- Hartman B.K.
- Keller A.
- Joh T.H.
- Pujol J.F.
A new double labeling technique using tyrosine hydroxylase and dopamine-β-hydroxylase immunohistochemistry: evidence for dopaminergic cells lying in the pons of the beef brain.
,
6- Taylor J.M.
- Main B.S.
- Crack P.J.
Neuroinflammation and oxidative stress: co-conspirators in the pathology of Parkinson's disease.
,
7- Harischandra D.S.
- Ghaisas S.
- Zenitsky G.
- Jin H.
- Kanthasamy A.
- Anantharam V.
- Kanthasamy A.G.
Manganese-induced neurotoxicity: new insights into the triad of protein misfolding, mitochondrial impairment, and neuroinflammation.
,
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
,
9- Pajarillo E.
- Johnson Jr, J.
- Kim J.
- Karki P.
- Son D.S.
- Aschner M.
- Lee E.
17β-Estradiol and tamoxifen protect mice from manganese-induced dopaminergic neurotoxicity.
). Numerous studies (
10Manganese toxicity is associated with mitochondrial dysfunction and DNA fragmentation in rat primary striatal neurons.
,
11- Stredrick D.L.
- Stokes A.H.
- Worst T.J.
- Freeman W.M.
- Johnson E.A.
- Lash L.H.
- Aschner M.
- Vrana K.E.
Manganese-induced cytotoxicity in dopamine-producing cells.
,
12- Lee E.S.
- Yin Z.
- Milatovic D.
- Jiang H.
- Aschner M.
Estrogen and tamoxifen protect against Mn-induced toxicity in rat cortical primary cultures of neurons and astrocytes.
) suggest that chronic oxidative stress, inflammation, and the resultant apoptosis are also linked to various neurodegenerative disorders, including Alzheimer's disease (AD) (
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
), multiple sclerosis (
14- Wang P.
- Xie K.
- Wang C.
- Bi J.
Oxidative stress induced by lipid peroxidation is related with inflammation of demyelination and neurodegeneration in multiple sclerosis.
), amyotrophic lateral sclerosis (
15- Blasco H.
- Garcon G.
- Patin F.
- Veyrat-Durebex C.
- Boyer J.
- Devos D.
- Vourc'h P.
- Andres C.R.
- Corcia P.
Panel of oxidative stress and inflammatory biomarkers in ALS: a pilot study.
), and PD (
16- Kim J.
- Pajarillo E.
- Rizor A.
- Son D.S.
- Lee J.
- Aschner M.
- Lee E.
LRRK2 kinase plays a critical role in manganese-induced inflammation and apoptosis in microglia.
).
Manganism is a condition caused by chronic exposure to manganese (Mn) that preferentially accumulates in the basal ganglia, leading to a variety of behavioral and motor disturbances with symptomatic resemblance to PD (
17- Newland M.C.
- Ceckler T.L.
- Kordower J.H.
- Weiss B.
Visualizing manganese in the primate basal ganglia with magnetic resonance imaging.
,
18- Alsulimani H.H.
- Ye Q.
- Kim J.
Effect of Hfe deficiency on memory capacity and motor coordination after manganese exposure by drinking water in mice.
,
19- Menezes-Filho J.A.
- de Carvalho-Vivas C.F.
- Viana G.F.
- Ferreira J.R.
- Nunes L.S.
- Mergler D.
- Abreu N.
Elevated manganese exposure and school-aged children's behavior: a gender-stratified analysis.
). At the molecular level, Mn induces oxidative stress that leads to damage of DNA, lipids, and proteins and promotes cellular injury (
10Manganese toxicity is associated with mitochondrial dysfunction and DNA fragmentation in rat primary striatal neurons.
,
11- Stredrick D.L.
- Stokes A.H.
- Worst T.J.
- Freeman W.M.
- Johnson E.A.
- Lash L.H.
- Aschner M.
- Vrana K.E.
Manganese-induced cytotoxicity in dopamine-producing cells.
). Mn also induces inflammation characterized by high levels of proinflammatory cytokines in microglia and astrocytes, promoting neurodegeneration and blood–brain barrier degradation (
20- Popichak K.A.
- Afzali M.F.
- Kirkley K.S.
- Tjalkens R.B.
Glial-neuronal signaling mechanisms underlying the neuroinflammatory effects of manganese.
,
21- Kirkley K.S.
- Popichak K.A.
- Afzali M.F.
- Legare M.E.
- Tjalkens R.B.
Microglia amplify inflammatory activation of astrocytes in manganese neurotoxicity.
). Mn-induced oxidative stress and inflammation induce apoptosis both in
in vitro and
in vivo settings (
9- Pajarillo E.
- Johnson Jr, J.
- Kim J.
- Karki P.
- Son D.S.
- Aschner M.
- Lee E.
17β-Estradiol and tamoxifen protect mice from manganese-induced dopaminergic neurotoxicity.
,
16- Kim J.
- Pajarillo E.
- Rizor A.
- Son D.S.
- Lee J.
- Aschner M.
- Lee E.
LRRK2 kinase plays a critical role in manganese-induced inflammation and apoptosis in microglia.
,
20- Popichak K.A.
- Afzali M.F.
- Kirkley K.S.
- Tjalkens R.B.
Glial-neuronal signaling mechanisms underlying the neuroinflammatory effects of manganese.
,
21- Kirkley K.S.
- Popichak K.A.
- Afzali M.F.
- Legare M.E.
- Tjalkens R.B.
Microglia amplify inflammatory activation of astrocytes in manganese neurotoxicity.
). Mn dysregulates proapoptotic/antiapoptotic molecules to signal a cascade of events leading to apoptosis in neuronal cell cultures (
20- Popichak K.A.
- Afzali M.F.
- Kirkley K.S.
- Tjalkens R.B.
Glial-neuronal signaling mechanisms underlying the neuroinflammatory effects of manganese.
,
22- Zhang K.
- Zhu Y.
- Wang X.
- Zhao X.
- Li S.
- Teng X.
Excess manganese-induced apoptosis in chicken cerebrums and embryonic neurocytes.
).
Molecular mechanisms of Mn-induced neuronal cell death have been extensively studied. Mn impaired TH activity and function by decreasing TH mRNA and protein levels both
in vitro and
in vivo (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
,
9- Pajarillo E.
- Johnson Jr, J.
- Kim J.
- Karki P.
- Son D.S.
- Aschner M.
- Lee E.
17β-Estradiol and tamoxifen protect mice from manganese-induced dopaminergic neurotoxicity.
,
23- Beck K.D.
- Knusel B.
- Pasinetti G.
- Michel P.P.
- Zawadzka H.
- Goldstein M.
- Hefti F.
Tyrosine hydroxylase mRNA expression by dopaminergic neurons in culture: effect of 1-methyl-4-phenylpyridinium treatment.
,
24- Kumasaka M.Y.
- Yajima I.
- Ohgami N.
- Ninomiya H.
- Iida M.
- Li X.
- Oshino R.
- Tanihata H.
- Yoshinaga M.
- Kato M.
Manganese-mediated decrease in levels of c-RET and tyrosine hydroxylase expression in vitro.
,
25- Johnson Jr., J.
- Pajarillo E.A.B.
- Taka E.
- Reams R.
- Son D.S.
- Aschner M.
- Lee E.
Valproate and sodium butyrate attenuate manganese-decreased locomotor activity and astrocytic glutamate transporters expression in mice.
). Mn disrupted TH activity via protein kinase C-δ and protein phosphatase 2A in dopaminergic neural cell lines (
26- Zhang D.
- Kanthasamy A.
- Anantharam V.
- Kanthasamy A.
Effects of manganese on tyrosine hydroxylase (TH) activity and TH-phosphorylation in a dopaminergic neural cell line.
). Because TH is a rate-limiting enzyme that plays a critical role in the production of dopamine (
27- Nagatsu T.
- Levitt M.
- Udenfriend S.
Tyrosine hydroxylase. The initial step in norepinephrine biosynthesis.
), it is important to understand the regulatory mechanisms of TH expression for dopaminergic neuronal function and survival. Several transcription factors have been reported to regulate TH expression, including cAMP response element-binding protein (CREB) (
28- Lim J.
- Yang C.
- Hong S.J.
- Kim K.S.
Regulation of tyrosine hydroxylase gene transcription by the cAMP-signaling pathway: involvement of multiple transcription factors.
), nuclear receptor–related-1 protein (Nurr1) (
29- Sakurada K.
- Ohshima-Sakurada M.
- Palmer T.D.
- Gage F.H.
Nurr1, an orphan nuclear receptor, is a transcriptional activator of endogenous tyrosine hydroxylase in neural progenitor cells derived from the adult brain.
), pituitary homeobox 3 (Pitx3) (
30- Messmer K.
- Remington M.P.
- Skidmore F.
- Fishman P.S.
Induction of tyrosine hydroxylase expression by the transcription factor Pitx3.
), activating enhancer-binding protein 2 (AP-2) (
31- Kim H.S.
- Hong S.J.
- LeDoux M.S.
- Kim K.S.
Regulation of the tyrosine hydroxylase and dopamine β-hydroxylase genes by the transcription factor AP-2.
), hypoxia-inducible factor-1α (HIF-1α) (
32- Lim J.
- Kim H.I.
- Bang Y.
- Seol W.
- Choi H.S.
- Choi H.J.
Hypoxia-inducible factor-1α upregulates tyrosine hydroxylase and dopamine transporter by nuclear receptor ERRγ in SH-SY5Y cells.
), forkhead box O1 (FOXO1), and neuron-restrictive silencing factor/repressor element 1-silencing transcription factor (NRSF/REST) (
33- Doan K.V.
- Kinyua A.W.
- Yang D.J.
- Ko C.M.
- Moh S.H.
- Shong K.E.
- Kim H.
- Park S.K.
- Kim D.H.
- Kim I.
- Paik J.H.
- DePinho R.A.
- Yoon S.G.
- Kim I.Y.
- Seong J.K.
- et al.
FoxO1 in dopaminergic neurons regulates energy homeostasis and targets tyrosine hydroxylase.
).
Recent studies have demonstrated that REST is increased in normal aging brains, preserving neuronal function and protecting against neurodegeneration through the repression of stress- and apoptosis-promoting genes (
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
). REST is an essential mammalian zinc finger transcriptional regulator (
34- Chen Z.F.
- Paquette A.J.
- Anderson D.J.
NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis.
) playing a variety of cellular functions, such as neurogenesis, differentiation, axonal growth, vesicular transport, and release, as well as ionic conductance (
35- Paquette A.J.
- Perez S.E.
- Anderson D.J.
Constitutive expression of the neuron-restrictive silencer factor (NRSF)/REST in differentiating neurons disrupts neuronal gene expression and causes axon pathfinding errors in vivo.
,
36Knockout of REST/NRSF shows that the protein is a potent repressor of neuronally expressed genes in non-neural tissues.
,
37- Moreno-Gonzalez G.
- López-Colomé A.M.
- Rodríguez G.
- Zarain-Herzberg A.
Transcription of the chicken Grin1 gene is regulated by the activity of SP3 and NRSF in undifferentiated cells and neurons.
,
38Regulation of the cholinergic gene locus by the repressor element-1 silencing transcription factor/neuron restrictive silencer factor (REST/NRSF).
). REST represses neuronal genes in non-neural cells by binding to a DNA sequence motif known as repressor element 1 (RE1; also known as NRSE) (
36Knockout of REST/NRSF shows that the protein is a potent repressor of neuronally expressed genes in non-neural tissues.
,
39- Chong J.A.
- Tapia-Ramírez J.
- Kim S.
- Toledo-Aral J.J.
- Zheng Y.
- Boutros M.C.
- Altshuller Y.M.
- Frohman M.A.
- Kraner S.D.
- Mandel G.
REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons.
,
40- Schoenherr C.J.
- Anderson D.J.
The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes.
). REST forms a complex with co-repressors and epigenetic modifiers, including histone deacetylases (HDAC), mSin3a, and CoREST, to repress expression of target genes (
41- Murai K.
- Naruse Y.
- Shaul Y.
- Agata Y.
- Mori N.
Direct interaction of NRSF with TBP: chromatin reorganization and core promoter repression for neuron-specific gene transcription.
,
42- Nomura M.
- Uda-Tochio H.
- Murai K.
- Mori N.
- Nishimura Y.
The neural repressor NRSF/REST binds the PAH1 domain of the Sin3 corepressor by using its distinct short hydrophobic helix.
,
43- Watanabe H.
- Mizutani T.
- Haraguchi T.
- Yamamichi N.
- Minoguchi S.
- Yamamichi-Nishina M.
- Mori N.
- Kameda T.
- Sugiyama T.
- Iba H.
SWI/SNF complex is essential for NRSF-mediated suppression of neuronal genes in human nonsmall cell lung carcinoma cell lines.
). However, accumulating evidence suggests that REST is highly complex and can also increase gene expression by acting as an activator of target genes. For example, REST splice variants, REST4/5 containing the N-terminal domain of REST (
44- Palm K.
- Belluardo N.
- Metsis M.
- Timmusk T.
Neuronal expression of zinc finger transcription factor REST/NRSF/XBR gene.
,
45- Shimojo M.
- Lee J.H.
- Hersh L.B.
Role of zinc finger domains of the transcription factor neuron-restrictive silencer factor/repressor element-1 silencing transcription factor in DNA binding and nuclear localization.
), have been shown to induce expression of glutamate synthetase, which is mediated by the transcription co-activator hBrm via the glucocorticoid receptor (
46- Abramovitz L.
- Shapira T.
- Ben-Dror I.
- Dror V.
- Granot L.
- Rousso T.
- Landoy E.
- Blau L.
- Thiel G.
- Vardimon L.
Dual role of NRSF/REST in activation and repression of the glucocorticoid response.
).
The loss of REST is associated with the pathogenesis of AD (
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
) and PD (
47- Kawamura M.
- Sato S.
- Matsumoto G.
- Fukuda T.
- Shiba-Fukushima K.
- Noda S.
- Takanashi M.
- Mori N.
- Hattori N.
Loss of nuclear REST/NRSF in aged-dopaminergic neurons in Parkinson's disease patients.
). Lewy bodies of PD brains contain REST protein aggregates, suggesting that abnormal protein trafficking and degradation may be related to the dysfunction of REST. Deletion of neuronal REST in mice treated with the PD neurotoxicant 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) showed greater motor deficits and loss of dopaminergic neurons compared with the MPTP-treated group (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
). These findings suggest that REST is protective in neurons against PD, warranting further studies of the protective mechanisms of REST in dopaminergic/catecholaminergic neurons.
The dual roles of REST as a repressor or as an activator in the regulation of gene expression are not completely understood. Studies have shown that variations within the RE1-binding sequence motifs modify REST–DNA-binding affinities that likely contribute to context-, tissue-, or cell-specific regulation of gene expression (
48- Bruce A.W.
- López-Contreras A.J.
- Flicek P.
- Down T.A.
- Dhami P.
- Dillon S.C.
- Koch C.M.
- Langford C.F.
- Dunham I.
- Andrews R.M.
- Vetrie D.
Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level.
). RE1-binding sequence motifs can be classified into canonical/common, restricted, and unique motifs that facilitate varying binding affinity for REST. REST enhanced the expression of various neuronal genes by binding to the RE1 site in their promoters, including glutamate receptor 2 (GluR2), dynamin I, and
N-methyl-
d-aspartate (NMDA) receptor (
49- Brené S.
- Messer C.
- Okado H.
- Hartley M.
- Heinemann S.F.
- Nestler E.J.
Regulation of GluR2 promoter activity by neurotrophic factors via a neuron-restrictive silencer element.
,
50- Yoo J.
- Jeong M.J.
- Lee S.S.
- Lee K.I.
- Kwon B.M.
- Kim D.S.
- Park Y.M.
- Han M.Y.
The neuron restrictive silencer factor can act as an activator for dynamin I gene promoter activity in neuronal cells.
,
51- Bai G.
- Zhuang Z.
- Liu A.
- Chai Y.
- Hoffman P.W.
The role of the RE1 element in activation of the NR1 promoter during neuronal differentiation.
). Interestingly, REST can also bind to the RE1 motif in small noncoding dsRNAs to promote differentiation of adult hippocampal stem cells to mature neurons (
52- Kuwabara T.
- Hsieh J.
- Nakashima K.
- Taira K.
- Gage F.H.
A small modulatory dsRNA specifies the fate of adult neural stem cells.
). These findings suggest that REST may regulate transcriptional activation or repression of neural genes depending on the cellular and microenvironmental context.
Although REST represses neural gene expression in non-neuronal cells, studies have demonstrated that it may act a positive transcriptional regulator of some genes, including B-cell lymphoma (Bcl)-2 (
53- Zhao Y.
- Zhu M.
- Yu Y.
- Qiu L.
- Zhang Y.
- He L.
- Zhang J.
Brain REST/NRSF is not only a silent repressor but also an active protector.
). Thus, REST may serve as a critical mediator in protection against Mn toxicity through the up-regulation of TH expression and protecting against Mn-induced oxidative stress, inflammation, and apoptosis in dopaminergic neurons. In this study, we investigated the mechanism of REST in TH expression at the transcriptional level in dopaminergic neurons and tested whether REST is protective against Mn-induced oxidative stress and apoptosis. Our results demonstrated that full-length NRSF/REST increased TH gene expression by binding to an RE1-binding sequence motif that was newly identified in the human TH promoter region, co-interacting with an epigenetic modifier, CREB-binding protein (CBP)/p300. Overexpression of REST also attenuated Mn-induced neurotoxicity by regulating genes related to oxidative stress, inflammation, and apoptosis, including up-regulation of catalase and
Bcl-2. Based on these results, REST protects against Mn neurotoxicity through the up-regulation of TH and attenuation of Mn-induced oxidative stress, inflammation, and apoptosis in dopaminergic neurons.
Discussion
Our findings demonstrate for the first time that REST/NRSF activates transcription of the TH gene by increasing TH promoter activity, mRNA, and protein levels in dopaminergic LUHMES and catecholaminergic CAD neuronal cells. REST directly binds to an RE1/NRSE-binding consensus site motif in the human TH promoter to enhance TH expression. Moreover, REST activation afforded neuroprotection against Mn toxicity by attenuating Mn-induced TH repression, oxidative stress, inflammation, and apoptosis. These results indicate that REST exerts protective effects against Mn-induced neurotoxicity by up-regulating TH, as well as up-regulating antioxidant and antiapoptotic genes.
It has been previously reported that REST dysfunction is associated with PD pathogenesis (
47- Kawamura M.
- Sato S.
- Matsumoto G.
- Fukuda T.
- Shiba-Fukushima K.
- Noda S.
- Takanashi M.
- Mori N.
- Hattori N.
Loss of nuclear REST/NRSF in aged-dopaminergic neurons in Parkinson's disease patients.
), and neuronal REST deletion in the whole brain exacerbated MPTP toxicity in an experimental mouse model (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
). Because REST was found as a repressor of multiple neuronal genes in non-neuronal cells in the brain (
36Knockout of REST/NRSF shows that the protein is a potent repressor of neuronally expressed genes in non-neural tissues.
), numerous studies have focused on REST's function as a repressor in various genes in concert with co-repressors, including Co-REST, mSin3a, and HDACs (
56- Naruse Y.
- Aoki T.
- Kojima T.
- Mori N.
Neural restrictive silencer factor recruits mSin3 and histone deacetylase complex to repress neuron-specific target genes.
,
61- Abrajano J.J.
- Qureshi I.A.
- Gokhan S.
- Zheng D.
- Bergman A.
- Mehler M.F.
REST and CoREST modulate neuronal subtype specification, maturation and maintenance.
,
62- Abrajano J.J.
- Qureshi I.A.
- Gokhan S.
- Zheng D.
- Bergman A.
- Mehler M.F.
Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation.
). However, considerable evidence indicates that an ensemble of target genes responds to REST (“transcriptionally-responsive” genes) in a cell-type–dependent and context-dependent manner (
63REST, a master transcriptional regulator in neurodegenerative disease.
). REST also activates genes, including catalase,
Bcl-2, and dynamin-1 (
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
,
50- Yoo J.
- Jeong M.J.
- Lee S.S.
- Lee K.I.
- Kwon B.M.
- Kim D.S.
- Park Y.M.
- Han M.Y.
The neuron restrictive silencer factor can act as an activator for dynamin I gene promoter activity in neuronal cells.
). It has been previously reported that REST activates its target genes by recruiting other co-activators such as ten-eleven translocation hydroxylase 3 (TET3) and nuclear receptor–binding SET domain protein 3 (NSD3).
Our findings reveal that REST increased TH promoter activity, mRNA, and protein levels in dopaminergic neuronal cells. TH contributes to the biosynthesis of dopamine and catecholamines by catalyzing the conversion of the amino acid
l-tyrosine to
l-3,4-dihydroxyphenylalanine (
27- Nagatsu T.
- Levitt M.
- Udenfriend S.
Tyrosine hydroxylase. The initial step in norepinephrine biosynthesis.
). Several studies demonstrated that REST functions as either a repressor or activator of gene transcription in a context-dependent manner, exhibiting complex regulatory effects (
64Repressor element silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) can act as an enhancer as well as a repressor of corticotropin-releasing hormone gene transcription.
,
65- Perera A.
- Eisen D.
- Wagner M.
- Laube S.K.
- Künzel A.F.
- Koch S.
- Steinbacher J.
- Schulze E.
- Splith V.
- Mittermeier N.
- Müller M.
- Biel M.
- Carell T.
- Michalakis S.
TET3 is recruited by REST for context-specific hydroxymethylation and induction of gene expression.
). Activation of the HDAC pathway can lead to interaction of HDAC1 with REST, resulting in abolished REST activation of TH promoter activity in dopaminergic neurons. In support of this, the REST-mediated repression of the corticotropin-releasing hormone gene was HDAC-dependent (
64Repressor element silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) can act as an enhancer as well as a repressor of corticotropin-releasing hormone gene transcription.
). Furthermore, MPTP treatment of neuronal REST conditional knockout (cKO) mice results in lower levels of TH in the striatum and decreased survival of dopaminergic neurons in the SNpc. Likewise, our
in vitro studies show that MPP
+, an active metabolite of MPTP, decreased REST and TH promoter activity (
Fig. 9,
A and
B), whereas overexpression of REST attenuated MPP
+-reduced TH promoter activity in dopaminergic neurons (
Fig. 9C). Deletion of REST abrogated trichostatin A–induced neuroprotection in REST cKO mice after MPTP treatment with further reduction of TH and dopamine levels leading to greater locomotor deficits (
66- Suo H.
- Wang P.
- Tong J.
- Cai L.
- Liu J.
- Huang D.
- Huang L.
- Wang Z.
- Huang Y.
- Xu J.
- Ma Y.
- Yu M.
- Fei J.
- Huang F.
NRSF is an essential mediator for the neuroprotection of trichostatin A in the MPTP mouse model of Parkinson's disease.
), indicating that REST is required for HDAC to decrease TH, and HDAC inhibition alone without REST is unable to protect the function of dopaminergic neurons.
Our findings reveal that REST increased TH expression by binding to a new REST consensus site in the human TH promoter (
Fig. 2,
A–C). It has been reported that REST repressed TH expression by binding to different REST-binding sites (NRSE-I, -II, and R) in the 3301 bp of the TH promoter in neural stem HB1.F3 cells (
67- Kim S.M.
- Yang J.W.
- Park M.J.
- Lee J.K.
- Kim S.U.
- Lee Y.S.
- Lee M.A.
Regulation of human tyrosine hydroxylase gene by neuron-restrictive silencer factor.
), suggesting that REST regulation on either activation or repression of TH depends on its binding motifs as well as in a context- and cell-specific manner. Furthermore, some studies suggest that the REST isoform, lacking the C-terminal domain of the REST protein known as REST4/5 (55 kDa), activates transcription of genes, but our results indicate that the full-length REST (∼150 kDa) is responsible for increased TH expression in CAD neurons (
Fig. 2D). REST also interacts with CBP/p300 as well as CREB to activate TH expression (
28- Lim J.
- Yang C.
- Hong S.J.
- Kim K.S.
Regulation of tyrosine hydroxylase gene transcription by the cAMP-signaling pathway: involvement of multiple transcription factors.
), suggesting that the full-length REST interacts with histone acetylation enhancer CBP and other transcription activators, forming a complex to increase TH transcription. Among the multiple toxicity mechanisms that are induced by Mn, oxidative stress, inflammation, and apoptosis in neurons have been well-established (
10Manganese toxicity is associated with mitochondrial dysfunction and DNA fragmentation in rat primary striatal neurons.
,
21- Kirkley K.S.
- Popichak K.A.
- Afzali M.F.
- Legare M.E.
- Tjalkens R.B.
Microglia amplify inflammatory activation of astrocytes in manganese neurotoxicity.
,
68- Stanwood G.D.
- Leitch D.B.
- Savchenko V.
- Wu J.
- Fitsanakis V.A.
- Anderson D.J.
- Stankowski J.N.
- Aschner M.
- McLaughlin B.
Manganese exposure is cytotoxic and alters dopaminergic and GABAergic neurons within the basal ganglia.
). Chronic exposure to Mn reduces Nrf2 levels, resulting in increased proinflammatory cyclooxygenase-2 and prostaglandin E2 levels in
in vitro settings (
69- Qi Z.
- Mi C.
- Wu F.
- Yang X.
- Sang Y.
- Liu Y.
- Li J.
- Yang H.
- Xu B.
- Liu W.
- Xu Z.
- Deng Y.
The effect of manganese exposure on GnRH secretion via Nrf2/mGluR5/COX-2/PGE2/signaling pathway.
). REST exerts protective effects against toxic insults, such as MPTP, PD, and AD (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
,
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
,
47- Kawamura M.
- Sato S.
- Matsumoto G.
- Fukuda T.
- Shiba-Fukushima K.
- Noda S.
- Takanashi M.
- Mori N.
- Hattori N.
Loss of nuclear REST/NRSF in aged-dopaminergic neurons in Parkinson's disease patients.
). Our findings reveal that REST increased Nrf2 levels, possibly by inhibiting its ubiquitination and thus promoting Nrf2 stabilization. Nrf2 is an inducible stress response transcription factor that binds to ARE in the promoter region of various genes to regulate the expression of antioxidant genes, such as
HO-1, GSH
S-transferase, and glutamate–cysteine ligase (
58- Loboda A.
- Damulewicz M.
- Pyza E.
- Jozkowicz A.
- Dulak J.
Role of Nrf2/HO-1 system in development, oxidative stress response and diseases: an evolutionarily conserved mechanism.
). REST regulates Nrf2 activation by modulating its binding activities or intracellular signaling molecules associated with Nrf2 in astrocytes and oligodendrocytes (
62- Abrajano J.J.
- Qureshi I.A.
- Gokhan S.
- Zheng D.
- Bergman A.
- Mehler M.F.
Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation.
). Several studies suggest that the epigenetic modifier HAT may contribute to the activation of Nrf2 by increasing histone acetylation (
62- Abrajano J.J.
- Qureshi I.A.
- Gokhan S.
- Zheng D.
- Bergman A.
- Mehler M.F.
Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation.
,
70- Zhang Z.
- Guo Z.
- Zhan Y.
- Li H.
- Wu S.
Role of histone acetylation in activation of nuclear factor erythroid 2-related factor 2/heme oxygenase 1 pathway by manganese chloride.
). Taken together, REST-induced Nrf2 activation might be a critical mechanism by which REST mitigates Mn-induced oxidative stress in dopaminergic neurons.
Loss of REST exacerbates toxin-induced dopaminergic neurotoxicity in animal PD models (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
) by inducing greater vulnerability to MPTP, resulting in severe impairment of locomotor activity (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
). Deletion of neuronal REST also increased expression of the glial fibrillary acidic protein, a marker of astrocyte activation and inflammation, as well as expression of proinflammatory IL-1β in the brain (
8- Yu M.
- Suo H.
- Liu M.
- Cai L.
- Liu J.
- Huang Y.
- Xu J.
- Wang Y.
- Zhu C.
- Fei J.
- Huang F.
NRSF/REST neuronal deficient mice are more vulnerable to the neurotoxin MPTP.
). Given that inflammation is critically involved in Mn toxicity and REST deletion, REST overexpression-induced anti-inflammatory effects against Mn-induced proinflammatory cytokines, such as IL-1β, IL-6, TNFα, and IFNγ, might be important to mitigate the detrimental effects of neuroinflammation and to improve cell survival.
In addition to oxidative stress and inflammation, the apoptotic cell death pathway is implicated in a wide array of neurological disorders (
71- Isaev N.K.
- Genrikhs E.E.
- Oborina M.V.
- Stelmashook E.V.
Accelerated aging and aging process in the brain.
). Therefore, understanding the effects of REST on the transcription of genes related to these intracellular toxicity mechanisms is extremely important for cell survival and protection. In this context, our results show that REST enhanced antioxidant and antiapoptotic genes, indicating that REST modulates multiple levels of neuroprotection. Previous studies also revealed that REST binds to the promoter regions of several proapoptotic/antiapoptotic genes, including
Bcl-2,
Bax, and
Daxx, which are dysregulated in AD brains (
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
). In addition, loss of REST binding to these antiapoptotic genes resulted in increased mRNA levels of proapoptotic Bax and Daxx and reduction of antiapoptotic Bcl-2 in neurons (
13- Lu T.
- Aron L.
- Zullo J.
- Pan Y.
- Kim H.
- Chen Y.
- Yang T.H.
- Kim H.M.
- Drake D.
- Liu X.S.
- Bennett D.A.
- Colaiácovo M.P.
- Yankner B.A.
REST and stress resistance in ageing and Alzheimer's disease.
). In support of this, our findings also reveal that REST decreased Mn-induced proapoptotic Bax and Daxx, whereas it increased antiapoptotic Bcl-2 and Bcl-xL in dopaminergic neurons (
Fig. 8). Enhanced expression of antiapoptotic genes, such as
Bcl-2 and
Bcl-xL, will lead to inhibition of apoptotic signaling and promote cell survival (
72- Cheng E.H.
- Wei M.C.
- Weiler S.
- Flavell R.A.
- Mak T.W.
- Lindsten T.
- Korsmeyer S.J.
BCL-2, BCL-X(L) sequester BH3 domain-only molecules preventing BAX- and BAK-mediated mitochondrial apoptosis.
). In addition to antiapoptotic functions, Bcl-2 and Bcl-xL play a role in other noncanonical functions such as regulation of mitochondrial dynamics, metabolism, and synaptic activity of neurons (
73- Aouacheria A.
- Baghdiguian S.
- Lamb H.M.
- Huska J.D.
- Pineda F.J.
- Hardwick J.M.
Connecting mitochondrial dynamics and life-or-death events via Bcl-2 family proteins.
). We found that REST protected dopaminergic neurons against Mn-induced mitochondrial damage (
Fig. 8D), suggesting that REST also plays a crucial role in mitochondrial stability and integrity, possibly by regulating gene expression. In addition, DN-REST, which inhibits endogenous REST function, decreased TH expression as well as exacerbated Mn-reduced TH levels, suggesting that REST is a critical component in attenuation of Mn-reduced TH.
Taken together, our findings demonstrate for the first time that REST is a positive regulator of TH in dopaminergic neurons by binding to a newly-identified REST-binding consensus site in the TH promoter with collaboration of CBP/p300 and CREB. Because dopaminergic dysfunction and cell death are hallmarks of PD and critically involved in Mn-induced dopaminergic toxicity, understanding mechanisms by which REST induces protection in dopaminergic neurons by enhancing antioxidant, anti-inflammatory, and antiapoptotic action may help elucidate its molecular mechanisms of neuroprotection against many neurodegenerative diseases (
Fig. 10). Given the myriad of protective effects invoked by REST in dopaminergic neurons, targeting REST through drug and therapeutic interventions may result in a promising avenue to treat neurodegenerative disorders associated with dopaminergic neurotoxicity.
Experimental procedures
Materials
Manganese(II) chloride (MnCl2), dimethyl sulfoxide (DMSO), and 3,4,5-dimethylthiazol-2,5-diphenyltetrazolium bromide (MTT) were purchased from MilliporeSigma. All cell culture media, including trypsin-EDTA, minimum essential media, Dulbecco's modified Eagle's medium (DMEM/F-12), and Opti-MEM, were obtained from Gibco. The chloromethyl derivative of 2′,7′-dichlorodihydrofluorescein diacetate (CM-H2DCFDA), an ROS molecular probe, and tetramethylrhodamine ethyl ester (TMRE), a mitochondrial membrane potential probe, were purchased from Invitrogen. Antibodies for REST (07-579) and ChIP-validated REST (17-10456) were acquired from MilliporeSigma. Antibodies for TH (sc-25269), Bcl-2 (sc-7382), Bcl-xL (sc-8392), Bax (sc-7480), Daxx (sc-8043), catalase (sc-271803), Nrf2 (sc-271803), HO-1 (sc-136960), CBP/p300 (sc-48343), p-CREB (sc-81486), and β-actin (sc-47778) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). CREB antibody (9197S) was obtained from Cell Signaling Technology (Danvers, MA). Antibodies for horseradish peroxidase (HRP)-conjugated rabbit anti-mouse IgG (ab6728), HRP-conjugated goat anti-rabbit IgG (ab97051), and goat anti-rabbit or anti-mouse antibodies conjugated with Alexa Fluor® 488, 568 or 647 were from Abcam (Cambridge, MA). Annexin-V staining buffer (420201), annexin-V binding buffer (422201), and FITC–annexin-V (640906) were purchased from Biolegend (San Diego, CA). Propidium iodide (PI, P4170) was obtained from MilliporeSigma. The TNFα standard tetramethylbenzidine enzyme-linked immunosorbent assay (ELISA) development kit for murine (900-T54) samples was acquired from PeproTech (Rocky Hill, NJ). All chemicals were prepared in phosphate-buffered saline (PBS), double-distilled H2O, or DMSO and diluted to working concentrations in Opti-MEM prior to use. Expression vectors REST-myc and its empty control vector (pCMV6-entry) were from OriGene Technologies (Rockville, MD). Control and expression vectors for CBP/p300, HDAC1, pHR′–NRSF–eGFP and TetO–FUW–DN-REST were obtained from Addgene (Watertown, MA). The human TH promoter vector was purchased from Active Motif. Catalase activity colorimetric/fluorometric kit (catalog no. K773-100) was obtained from BioVision (Milpitas, CA). MDA/lipid peroxidation/TBARS assay kit (catalog no. 10009055) was obtained from Cayman Chemical (Ann Arbor, MI).
Cell culture
Dopaminergic/catecholaminergic neuronal cell lines were used in the study. Mouse CAD (08100805) cell line was obtained from MilliporeSigma. LUHMES (CRL-2927) cell line was obtained from American Type Culture Collection (ATCC, Manassas, VA). CAD neuronal cultures were maintained in DMEM/F-12 supplemented with 2 mml-glutamine (Gibco), 8% fetal bovine serum, 1× GlutaMAXTM (Gibco), 100 units/ml penicillin, and 100 μg/ml streptomycin. LUHMES cells were maintained in DMEM/F-12 with 1% N2 supplement (Gibco) and 40 ng/ml basic fibroblast growth factor (PeproTech). LUHMES cells were subcultured on culture flasks pre-coated with 50 μg/ml poly-l-ornithine. CAD cells were differentiated with serum-free media, whereas LUHMES cells were differentiated into morphologically and biochemically mature dopamine-like neurons following exposure to tetracycline, glial cell–derived neurotrophic factor, and dibutyryl-cAMP (PeproTech). Cells were dissociated using 0.025% trypsin, 0.1 g/liter EDTA (Gibco), then plated in 96-well plates for multiple assays or 6-well plates for flow cytometry, mRNA, or protein analysis. All cells were maintained at 37 °C in a 95% air, 5% CO2 incubator.
Transfections
Transfections were performed using Lipofectamine 3000 (Invitrogen) or by the GenePulser XcellTM electroporation system (Bio-Rad), according to manufacturer's instructions. For Lipofectamine transfection, cells were transfected with 0.1–1.0 μg of plasmid vectors per 5.0 × 105 cells. For electroporation, cells were transfected with 1.0–10.0 μg of plasmid vectors per 1.0 × 107 cells. Prior to electroporation, cells were grown until 90% confluency in growth media. The electroporation parameters were set for the exponential protocol at 180 V and 950-microfarad capacitance in 4-mm electroporation cuvettes, followed by gentle pipetting and incubation in growth media. Cells were transfected at least overnight with plasmid vectors, followed by further assays and analyses.
Measurement of promoter activity
CAD and LUHMES cells were transfected with the human TH promoter plasmid with Lipofectamine 3000 or by electroporation. The mutations on RE1 consensus binding sites (−288 to −268 position) in the human TH promoter plasmid was performed in this experiment. The human TH promoter plasmid was obtained from Active Motif (Carlsbad, CA), and the REST promoter plasmid was a gift from Dr. Yvon Trottier (INSERM, France). After overnight transfections, the effects of various compounds on promoter activities were determined with the Bright-Glo luciferase assay kit (Promega, Madison, WI) according to the manufacturer's instructions.
qPCR analysis
CAD and LUHMES cells were harvested after treatment with the designated compounds (three samples/group). Total RNA was extracted from samples using the RNeasy mini kit (Qiagen, Valencia, CA), and 2 μg of purified RNA was transcribed to cDNA with a high-capacity cDNA reverse transcription kit (Applied Biosystems, Foster City, CA). Real-time qPCR was performed using the CFX96 real-time PCR detection system (Bio-Rad). The reaction mixture contained 1 μl of each cDNA template, 0.4 μm primers, and iQ SYBR Green Supermix (Bio-Rad). The total reaction volume was 25 μl. The following primers were used: mouse REST, 5′-ACT TTG TCC TTA CTC AAG CTC-3′ (forward) and 5′-CAT TTA AAT GGC TTC TCA CCT G-3′ (reverse); mouse TH 5′-CAC TAT GCC CAC CCC CAG-3′ (forward) and 5′-CGC CGT CCA ATG AAC CTT-3′ (reverse); mouse TNFα 5′-GGT CCC CAA AGG GAT GAG AAG TTC-3′ (forward) and 5′-CCA CTT GGT GGT TTG CTA CGA CG-3′ (reverse); mouse IL-1β 5′-CAA CCA ACA AGT GAT ATT CTC CAT G-3′ (forward) and 5′-GAT CCA CAC TCT CCA GCT GCA-3′ (reverse); mouse IL-6 5′-ATG GAT GCT ACC AAA CTG GAT-3′ (forward) and 5′-TGA AGG ACT CTG GCT TTG TCT-3′ (reverse); mouse IFNγ 5′-ATG AAC GCT ACA CAC TGC ATC-3′ (forward) and 5′-CCA TCC TTT TGC CAG TTC CTC-3′ (reverse); mouse catalase 5′-AGC GAC CAG ATG AAG CAG TG-3′ (forward) and 5′-TCC GCT CTC TGT CAA AGT GTG-3′ (reverse); mouse GAPDH 5′-CTC ATG ACC ACA GTC CAT GC-3′ (forward) and 5′-CAC ATT GGG GGT AGG AAC AC-3′ (reverse); human REST 5′-GTG AGC GAG TAT CAC TGG AGG-3′ (forward) and 5′-CCC ATT GTG AAC CTG TCT TGC-3′ (reverse); human TH 5′-GCG CAG GAA GCT GAT TGC TG-3′ (forward) and 5′-TGT CTT CCC GGT AGC CGC G-3′ (reverse); and human GAPDH 5′-ACA ACT TTG GTA TCG TGG AAG G-3′ (forward) and 5′-GCC ATC ACG CCA CAG TTT C-3′ (reverse). The qPCR parameters were set for 1 cycle at 95 °C for 10 min, 40 cycles at 95 °C for 15 s, and 60–65 °C for 1 min. GAPDH was utilized as an internal control. Following PCR, mRNA levels were analyzed using the Bio-Rad CFX Manager Version 3.1.
Western blot analysis
After treatment with the designated compounds, CAD and LUHMES cells were washed with ice-cold PBS. Cells were lysed by adding radioimmunoprecipitation assay (RIPA) buffer and protease inhibitor mixture and were then harvested. The protein concentration of the lysates was determined by bicinchoninic acid assay. Thirty μg of protein per sample was mixed with 4× Laemmli buffer and 5% β-mercaptoethanol in a 3:1 ratio and then heated at 95 °C for 10 min. The samples were run on 10% SDS-polyacrylamide gels and transferred to a nitrocellulose membrane for Western blot analysis. The primary antibodies were used at a 1:1000 dilution, and HRP-conjugated secondary antibodies were used at a 1:5000 dilution. Protein bands were detected with SuperSignalTM West Pico PLUS chemiluminescent substrate (Thermo Fisher Scientific, Rockford, IL) and quantified using the Molecular Imager ChemiDoc XRS+ System (Bio-Rad).
Immunocytochemistry
For immunostaining, cells were cultured on poly-l-lysine–coated glass coverslips in 6-well plates. After each experiment, cells were fixed using 4% paraformaldehyde in PBS, pH 7.4, for 10 min at room temperature, and then cells were washed three times with ice-cold PBS. Cells were permeabilized and then incubated with blocking buffer (1× PBS, 10% normal serum, 0.1% Tween 20) for 1 h at room temperature, washed, and incubated overnight with primary antibodies for TH, REST, CBP/p300, or CREB at 1:250 dilution at 4 °C. After overnight incubation, tissue sections were incubated with fluorescent-conjugated secondary antibodies Alexa Fluor® 488 and 568 (1:1,000 dilution) for 1 h at room temperature in the dark, then washed, and mounted on to slides with 4′,6-diamidino-2-phenylindole fluoromount solution for imaging analysis. Cellular localization and fluorescence intensity were assessed for each sample using a Ts2R fluorescence microscope (Nikon Instruments, Melville, NY).
Preparation of cytoplasmic and nuclear fractions
Cells were lysed in hypotonic buffer (10 mm HEPES-KOH, pH 7.9, 10 mm KCl, 1.5 mm MgCl2) containing 0.5% Nonidet P-40 and centrifuged at 2500 rpm for 5 min at 4 °C. The lysates containing cytoplasmic fractions were saved. The nuclei in the pellet were dissolved in hypertonic buffer (20 mm HEPES-KOH, pH 7.9, 0.4 m NaCl, 1.5 mm MgCl2, 0.2 mm EDTA, and 25% glycerol) with periodic vortexing and incubation on ice for 30 min. The nuclear fractions were obtained after spinning at 20,000 × g for 10 min at 4 °C, and protein concentrations were determined by bicinchoninic acid assay.
ChIP assay
The ChIP assay was performed using the EZ-ChIP kit (Millipore) according to the manufacturer's instructions. Briefly, cross-linking was done by treating cells with formaldehyde for 10 min at room temperature. After washing with ice-cold PBS, cells were lysed in SDS lysis buffer containing protease inhibitor mixture. The cell lysates were sonicated and centrifuged at 15,000 × g for 10 min at 4 °C. The supernatant was mixed with ChIP dilution buffer, and 60 μl of protein G–agarose was added. After 1 h of incubation at 4 °C, the agarose beads were pelleted by spinning at 3000 × g for 1 min. Then, 1% of the supernatants were saved as inputs, and REST or rabbit IgG (negative control) antibodies were added to the remainder and incubated overnight at 4 °C. Protein G–agarose beads (60 μl) were added and incubated at 4 °C for 1 h. The agarose beads were pelleted and washed with low-salt and high-salt immune complex wash buffer. The free DNA obtained after reverse cross-linking of the protein–DNA complex was purified, and the real-time qPCR was carried out with the REST primers: 5′-TCG AAC CTG CAA AAG TGG GC-3′ (forward) and 5′-CCC CCA GCC CAT GTA ACA A-3′ (reverse). Following qPCR, immunoprecipitated DNA were quantified using the Bio-Rad CFX Manager 3.1. The end products of qPCR were also applied for the agarose gel electrophoresis.
DNA affinity purification assay (DAPA)
DAPA was performed according to the manufacturer's recommendation using a μMACS FactorFinder Kit (Miltenyi Biotec, Inc., Auburn, CA). Briefly, 1.5 μg of biotinylated oligonucleotides were incubated with 50 μg of nuclear extract in binding buffer for 20 min. The incubation was continued for another 10 min after the addition of 100 μl of streptavidin microbeads. The reaction mixture was applied onto the microcolumn that was already equilibrated with two 100-μl washes of binding buffer. After four washes of 100 μl each with low-salt and high-salt buffers, proteins were eluted using 30 μl of elution buffer and analyzed by Western blotting.
EMSA
EMSA was performed using a LightShift chemiluminescent kit (Thermo Fisher Scientific) according to the manufacturer's instructions. Briefly, 5 μg of nuclear extract from cells were incubated with biotin-labeled oligonucleotides containing the REST consensus binding sites of the TH promoter for 20 min on ice. The DNA–protein complexes were resolved on 8% nondenaturing DNA polyacrylamide gels and transferred to nylon membranes. DNA–protein complexes were detected using a chemiluminescent nucleic acid detection module (Thermo Fisher Scientific). The primers pairs used for REST (TH promoter including the RE1 consensus site) were 5′-GCT GTC TCA GCC CCC CGC AGA GCA CGA GCC C-3′ and 5′-GGG CTC GTG CTC TGC GGG GGG CTG AGA CAG C-3′.
Site-directed mutagenesis
The RE1 consensus binding sequence in the TH promoter was mutated using PfuUltra II Fusion HS DNA polymerase kit (Agilent Technologies, Cedar Creek, TX) according to manufacturer's recommendations. The TH promoter (−673 to +97 bp) subcloned into the LightSwitchTM promoter reporter vector was used as the original template for mutation. The primer sets used were RE1 mutant #1 (RE1-mu1) 5′-GGC TGT CTC AGC CTC CCG CAG CGC ACG AGC C-3′ and 5′-GGC TCG TGC GCT GCG GGA GGC TGA GAC AGC C-3′, and RE1 mutant #2 (RE1-mu2) 5′-CTG GCT GTC TCA GCC TCC CTC AGA GCA CGA GCC-3′ and 5′-GGC TCG TGC TCT GAG GGA GGC TGA GAC AGC CAG-3′. The RE1 mutant clones were confirmed by Sanger sequencing.
Assays of oxidative stress, lipid peroxidation, and catalase activity
ROS, lipid peroxidation, and catalase activity were measured in accordance with the manufacturer's protocols. Generation of ROS as an indicator of oxidative stress was measured using the Life Technologies, Inc., CM-H2DCFDA ROS molecular probe. End-point product fluorescence was measured in each assay using the Spectramax® i3x multimode microplate reader from Molecular Devices (Sunnyvale, CA). Briefly, CAD neurons were washed with PBS and treated with Mn (250 μm, 3 h) at 37 °C. Cells were washed, and 2.5 μm CM-H2DCFDA was added for 10 min. End-point fluorescence was determined at an excitation/emission wavelength of 485/527 nm.
Lipid peroxidation was assessed in cell lysates by the measurement of MDA, an end product of lipid peroxidation, which reacts with thiobarbituric acid to form a complex. The reaction product fluorescence was determined at an excitation/emission wavelength of 530/550 nm in the fluorescence plate reader using the MDA standard curve.
Catalase activity was measured according to the manufacturer's protocol. Briefly, cells were extracted with mammalian cell lysis buffer and further analyzed using the assay kit. Catalase activity was calculated as the rate of breakdown in H2O2. OxiRedTM probe reacts with unconverted H2O2 and was measured at an excitation/emission wavelength of 535/587 nm in the fluorescence plate reader.
ELISA
TNFα release from CAD cells was determined using a murine TNFα ELISA kit (PeproTech) according to the manufacturer's instructions. Briefly, cell-free media (1 ml/well) were collected from samples after exposure to Mn (250 μm) for 12 h. ELISA was performed, and the concentration of secreted TNFα was determined using a multimode microplate reader (Molecular Devices) set to 450 nm, with wavelength correction set at 620 nm.
Flow cytometry
Cellular apoptosis was determined by an annexin V–FITC/PI staining using fluorescence-activated cell sorting (FACS). Mn (250 μm) was added; the cells were incubated for 12 h, and cells were dissociated via trypsinization, washed twice, and resuspended in a binding buffer. One hundred-μl aliquots containing 1.0 × 106 cells per sample were used for the experiment. Following resuspension, cells were stained sequentially with annexin V–FITC (5 μg/μl, Biolegend) and PI (5 μg/μl, Sigma) according to the manufacturer's instructions. After incubation for 15 min, 400 μl of binding buffer was added. Apoptotic cells were analyzed by a BD FACSCalibur 2.0 flow cytometer (BD Biosciences) using FlowJo X software Version 10 (Ashland, OR).
For protein staining, cells were washed twice and resuspended in cell staining buffer, and then stained with anti-TH and anti-REST antibodies at 1:100 dilution. After incubation for 1 h, cells were washed twice, followed by staining with fluorescent-labeled secondary antibodies for 30 min. Fluorescent cells were analyzed by a BD FACSCalibur 2.0 flow cytometer using FlowJo X software Version 10.
Cell viability assay
CAD neurons (2 × 104/well) were grown in 96-well plates then exposed to Mn (250 μm) for 12 h. After incubation for the designated time period, cells were washed twice with ice-cold PBS. Ten μl of MTT (5 mg/ml in PBS) was added, and cells were incubated for 3 h at 37 °C. After incubation, 100 μl of 0.1 n HCl was added, and the absorbance of the converted dye was measured at a wavelength of 570 nm using a microplate reader.
Δψm assay
Mitochondrial Δψm as an indicator of mitochondrial function was measured using TMRE from Life Technologies, Inc. End-point product fluorescence was measured in each assay using the Spectramax® i3x multimode microplate reader from Molecular Devices (Sunnyvale, CA). Briefly, CAD neurons were treated with Mn (50, 100, and 250 μm) for 1 h at 37 °C, followed by washing with PBS and incubation with 50 nm TMRE for 30 min. End-point fluorescence was determined at an excitation/emission wavelength of 549/575 nm.
Statistical analysis
All data were expressed as the mean ± S.E. of the mean. The statistical analyses were performed using either Student's t test or one-way analysis of variance (ANOVA), followed by Tukey's post hoc tests using the GraphPad Prism software Version 6.0 (San Diego, CA). A p value of less than 0.05 (p < 0.05) was considered statistically significant.