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* This work was supported by a grant-in-aid for scientific research on Priority Area No. 10178104 from the Ministry of Education, Science, Sports and Culture, Japan.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked “advertisement” in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.The nucleotide sequence reported in this paper has been submitted to the DDBJ/GenBankTM/EBI Data Bank with accession number .
A cDNA that encodes UDP-N-acetyl-d-glucosamine (GlcNAc):GlcNAcβ1–6(GlcNAcβ1–2)Manα1–R[GlcNAc to Man]β1,4N-acetylglucosaminyltransferase VI (GnT VI), which is responsible for the formation of pentaantennary asparagine-linked oligosaccharides (N-glycans), has been cloned from a hen oviduct cDNA library based on the partial amino acid sequences of the purified enzyme. The isolated cDNA clone contained an open reading frame encoding 464 amino acids, including all of the peptides that were sequenced. The deduced amino acid sequence predicts a type II transmembrane topology and contains two potential N-glycosylation sites. The primary structure was found to be significantly similar to human GnT IV-homologue, the gene for which was cloned from the deleted region in pancreatic cancer, and to human and bovine GnT IVs. Chicken GnT VI-transfected COS-1 cells showed a high GnT VI activity (26.8 pmol/h/mg protein), whereas nontransfected, mock-transfected, or human GnT IV-homologue-transfected COS-1 cells had no activity. Northern blot analysis using poly(A)+ RNA from hen oviduct indicated that the size of GnT VI mRNA is 2.1 kilobases. Reverse transcription-polymerase chain reaction analysis showed that GnT VI mRNA was relatively highly expressed in oviduct, spleen, lung, and colon.
polymerase chain reaction
human GnT IV-homologue
The biological roles of asparagine-linked oligosaccharides (N-glycans)1 on glycoproteins are thought to be played through the interaction of terminal glycan structures and their receptors. The diversity and avidity of the terminal structures are, however, regulated by the core structure of N-glycans (for a review, see Ref.
). To date, GnTs I–V have been purified, and their corresponding genes have been cloned (2–16). Only GnT VI has not been purified, and its gene structure remains unknown. GnT VI catalyzes the transfer of GlcNAc to position 4 of the Manα1,6 arm of the core structure of N-glycan, forming the most highly branched pentaantennary glycans with a bisecting GlcNAc. These glycans have been found in hen ovomucoid (
In order to establish the identity of GnT-VI and obtain insight into the function of pentaantennary N-glycans, molecular cloning of this enzyme is essential. Very recently, this enzyme has been purified to apparent homogeneity from hen oviduct (
). In this report, we describe the molecular cloning of cDNA encoding chicken GnT VI on the basis of the partial amino acid sequence of the purified enzyme. The similarities in the primary structures of GnT VI and IV are presented.
Amino Acid Sequencing of Peptides Derived from Purified GnT VI
GnT VI was purified from hen oviduct as described previously (
). Approximately 2 μg of the purified GnT VI was subjected to SDS-polyacrylamide gel electrophoresis under reducing conditions followed by staining with Coomassie Brilliant Blue R-250. The band of 60 kDa was excised and treated with 0.1 μg ofAchromobacter protease I (lysylendopeptidase) (
) (a gift from Dr. T. Masaki, Ibaraki University, Ibaraki, Japan) at 37 °C for 12 h in 0.1 m Tris-HCl (pH 9.0) containing 0.1% SDS and 1 mm EDTA. The peptides generated were extracted from the gel and separated on columns of DEAE-5PW (1 × 20 mm; Tosoh, Tokyo, Japan) and CAPCELL PAK C18 UG120 (1 × 100 mm; Shiseido, Tokyo, Japan) connected in series with a model 1100 (Hewlett Packard) liquid chromatography system. The peptides were eluted at a flow rate of 35 μl/min using a linear gradient of 0–60% solvent B in 96 min, where solvents A and B were 0.09% (v/v) aqueous trifluoroacetic acid and 0.075% (v/v) trifluoroacetic acid in 80% (v/v) acetonitrile, respectively. Selected peptides were subjected to Edman degradation using a model Procise 494 cLC sequencer (PerkinElmer Life Sciences) and to matrix-assisted laser desorption ionization time of flight mass spectrometry on a Reflex MALD-TOF (Bruker-Franzen Analytik, Bremen, Germany) in linear mode using 2-mercaptobenzothiazole (
Hen oviduct was kindly provided by Oriental Yeast Corp. (Tokyo, Japan). Hen oviduct total RNA was extracted using TRIZOL reagent (Life Technologies, Inc.). Based on the amino acid sequence of peptides derived from the purified GnT VI (Table I), degenerate oligonucleotides of both sense and antisense strands were synthesized with deoxyinosine substitution as indicated in Table II. These oligonucleotides served as primers for RT-PCR analysis using total RNA from hen oviduct. A reverse transcriptase reaction was performed at 42 °C for 1 h using 50 pmol of random hexamers as primer, 2 μg of total RNA, 0.5 mm each dNTP, 20 mm Tris-HCl (pH 8.4), 50 mm KCl, 5 mm MgCl2, 10 mm dithiothreitol, and 200 units of Moloney murine leukemia virus reverse transcriptase (SuperScript II RT, Life Technologies, Inc.) in a final volume of 20 μl. The reaction mixture of the following PCR contained 2-μl aliquots of the reverse transcriptase reaction solution, 100 pmol of each primer, 0.2 mm of each dNTP, 50 mm KCl, 10 mm Tris-HCl (pH 8.3), 1.5 mm MgCl2, and 1.25 units Taqpolymerase in a final volume of 50 μl. The reaction mixtures were subjected to 50 cycles of denaturation at 94 °C for 30 s, annealing at 50 °C for 30 s, and extension at 72 °C for 10 s. After polyacrylamide gel electrophoresis of the PCR products, DNA fragments were excised and subcloned into pT7Blue vector (Novagen, WI).
Table IAmino acid sequence data for selected peptides of hen oviduct GnT VI
Amino acid sequence
The amino acid sequences are shown using the single-letter code. n indicates the one amino acid residue that could not be assigned because of assay difficulties.
Based on the sequence of the RT-PCR products using primer sets consisting of 91S2 and 91A1 or of 89S2 and 89A1, oligonucleotides of both sense (5′-TCTCCATTGTCTTCCAC-3′, termed 91SP, or 5′-TGTCATCAGTGCGACGA-3′, termed 89SP) and antisense (5′-GTGGAAGACAATGGAGA-3′, termed 91AP, or 5′-TCGTCGCACTGATGACA-3′, termed 89AP) strands were synthesized. RT-PCR products using primer set 89SP and 91AP or primer set 91SP and 89AP were subcloned into pT7Blue vector.
Preparation of Hen Oviduct cDNA Library
Total RNA was extracted from a hen oviduct as described above. Poly(A)+RNA was further purified with oligo(dT)-Latex (Oligotex-dT30(Super), Roche Molecular Biochemicals). Double stranded cDNA was synthesized using a cDNA synthesis kit (ZAP-cDNA synthesis kit, Stratagene). Briefly, the first cDNA strand was synthesized by reverse transcription of the poly(A)+ RNA with the primer including oligo(dT) andXhoI restriction enzyme recognition site. After synthesis of the second strand, the double stranded cDNA was ligated with anEcoRI adapter. The cDNA was then ligated toEcoRI- and XhoI-digested Uni-ZAP XR vector and subsequently packaged in vitro (Gigapack III Gold packaging extract, Stratagene).
Isolation of cDNA Clones from a Hen Oviduct cDNA Library
Approximately 3.9 × 105 recombinant phages were screened by plaque hybridization with a digoxigenin-labeled DNA probe that had been synthesized using a digoxigenin PCR probe synthesis kit (Roche Molecular Biochemicals) with primer sets of 89SP and 91AP. Hybridization was carried out at 42 °C overnight with a nylon membrane (Roche Molecular Biochemicals) in a hybridization buffer containing 1 ng of digoxigenin-labeled DNA probe/cm2 of membrane, 50% formamide, 5× SSC, 2% blocking reagent (Roche Molecular Biochemicals), 0.1% N-laurylsarcosine, and 0.02% SDS. The detection procedure was carried out with a digoxigenin luminescent detection kit (Roche Molecular Biochemicals) according to the manufacturer's instructions. A λ phage clone was picked up from positive plaque, and pBS-GnT VI was obtained with in vivoexcision of the pBluescript phagemid from the Uni-ZAP XR Vector according to the manufacturer's instructions.
The subcloned DNAs were sequenced by the dideoxy chain termination method using Taq DNA polymerase (Big Dye Terminator cycle sequencing kit, PerkinElmer Life Sciences) with a DNA sequencer (Applied Biosystems model 377).
Expression of GnT VI cDNA in COS-1 Cells
pBS-GnT VI was digested with EcoRI and XhoI, and the inserted DNA was ligated between the EcoRI and XhoI sites of the expression vector pSVK3 (Amersham Pharmacia Biotech) (termed pSV-GnT VI). pBS-human GnT IV-homologue (pBS-hGnT IVh) (
) was digested with XbaI and XhoI, and the inserted DNA was ligated between the XbaI and XhoI sites of pSVK3 (pSV-hGnT IVhR). Because pSV-hGnT IVhR contained an oppositely directed hGnT IVh against the SV40 promoter, it was digested withSalI and religated to obtain a clone containing an appropriate-directed hGnT IVh (pSV-hGnT IVh). COS-1 cells (1 × 106) precultured for a day in a 100-mm-diameter dish were transfected by lipofection with 2 μg of plasmid DNA, 8 μl of PLUS reagent, and 12 μl of LipofectAMINE (Life Technologies, Inc.). After 72 h, the cells were washed twice with 2 ml of cold phosphate-buffered saline and then harvested with 0.1 ml of phosphate-buffered saline using a silicon scraper. The cells were sonicated in ice and assayed for various GlcNAc transferase activities and protein concentration (BCA protein assay kit, Pierce) using bovine serum albumin as a standard. GnT III, IV, V, and VI activities were assayed as described previously (
Four μg of poly(A)+RNA from hen oviduct was denatured in 50% (v/v) formamide, 17.5% (v/v) formaldehyde, 20 mm MOPS (pH 7.0) at 65 °C, electrophoresed in a 1% agarose gel containing 6% formaldehyde, and then transferred to a nylon membrane (Roche Molecular Biochemicals). A digoxigenin-labeled DNA probe was synthesized using a digoxigenin PCR probe synthesis kit (Roche Molecular Biochemicals) with 5′-ATGCGGTGCTCCCCGAA-3′ and 5′-GGTGCCTGCAGTCCAAA-3′ as primers and pBS-GnT VI as template. The membrane was hybridized with the DNA probe at 50 °C. A digoxigenin-labeled RNA molecular weight marker II (Roche Molecular Biochemicals) was used as a size marker. Other methods were the same as those used for the plaque hybridization.
Amino Acid Sequence Determination and Preparation of cDNA Probe by Polymerase Chain Reaction
To determine a partial amino acid sequence, purified GnT VI was digested with lysylendopeptidase, and the resultant peptides were isolated on a reversed-phase high performance liquid chromatography column. Amino acid sequences determined for five peptides are shown in Table I. P93 was the fragment of P89 completely digested with lysylendopeptidase. Based on the amino acid sequences of P89 and P91, we synthesized degenerate oligonucleotides for sense and antisense primers (TableII). In order to reduce the primer combinations, deoxyinosine was substituted in positions where the codon degeneracy exceeded 2, and for each serine, arginine, or leucine residue, we prepared primer combinations of two codon types as shown in Table II. Oligonucleotides 91S1, 91S2, and 91A1–91A4 were synthesized on the basis of the amino-terminal and carboxyl-terminal sequences of P91. Eight possible pairs of sense and antisense primers were first employed in RT-PCR analysis using total RNA from hen oviduct as the template. The pair of 91S2 and 91A1 primer sets produced a cDNA fragment of 80 bp, corresponding to the length estimated from the amino acid sequence of P91. Similarly, oligonucleotides 89S1, 89S2, and 89A1–89A4 were synthesized on the basis of the peptide sequence of P89. Eight possible pairs of sense and antisense primers were used in RT-PCR analysis, and the pair of 89S2 and 89A1 primer sets produced a cDNA fragment of 71 bp, corresponding to the length estimated from the amino acid sequence of P89. When the fragments were subcloned and sequenced, the deduced amino acid sequences coincided with that of P91 and P89. Then, the sense (91SP and 89SP) and antisense (91AP and 89AP) primers based on nucleotide sequences of subcloned PCR fragments were synthesized. When we performed RT-PCR using 89SP and 91AP as a primer, a product of 850 bp was amplified. Sequencing analysis revealed that the 850-bp fragment included the sequence encoding P25, suggesting that this fragment was a part of the target gene.
Screening of Hen Oviduct cDNA Library
A λZAP hen oviduct cDNA library was screened using a digoxigenin-labeled DNA probe synthesized from the 850-bp cDNA fragment described above. A positive clone was isolated from 3.9 × 105 plaques, and in vivo excision of pBluescript phagemid was carried out to yield a plasmid pBS-GnT VI. The nucleotide sequence of its cDNA insert (2.1 kilobases) was determined (Fig.1).
cDNA and Predicted Protein Sequence of the GnT VI
As shown in Fig. 1A, the cDNA consisted of 2046 nucleotides with a putative initiator codon at 219 and a TGA stop codon at 1611, having an open reading frame encoding 464 amino acid residues with a molecular mass of 52,817 Da. The deduced amino acid sequence included all of the peptide residues obtained from the digest of the purified protein. Because there is only one in-frame ATG codon upstream from the sequence of the P93 peptide, which is the most upstream peptide obtained, in the open reading frame, we identified the initiation codona priori. A putative polyadenylation signal was located at nucleotide 2026 followed by poly(A) tracts. The 2065-bp cDNA length is highly consistent with the mRNA size observed in hen oviduct (Fig. 3), indicating that the cDNA is nearly full-length. The deduced amino acid sequence contained two potential N-linked glycosylation sites (Fig. 1). If the enzyme protein possesses twoN-linked oligosaccharide chains, the molecular mass will agree with that of the purified protein, which is 60 kDa, observed on SDS-polyacrylamide gel electrophoresis under reducing conditions (
). A hydropathy plot analysis revealed one prominent hydrophobic segment with cationic borders in the amino-terminal region (Fig.1B), predicting that this protein has type II transmembrane topology, as has been the case for most glycosyltransferases cloned to date.
A homology search of the predicted protein revealed a significant homology with human GnT IV-homologue (
). GnT VI is more closely related to human GnT IV-homologue (approximately 50% identity) than to bovine GnT IV, human GnT IVa, or human GnT IVb (25% identity) (Fig. 2). This finding prompted us to examine whether GnT IV-homologue is a human counterpart of chicken GnT VI.
Overexpression of Chicken GnT VI and Human GnT IV-homologue cDNAs in COS-1 Cells
To confirm that the isolated cDNA clone actually encodes GnT VI and to investigate whether the human GnT IV-homologue has GnT VI activity, the cloned cDNA and human GnT IV-homologue cDNA were inserted into a mammalian expression vector, pSVK3, and overexpressed in COS-1 cells. As shown in TableIII, COS-1 cells transfected with the pSV-GnT VI showed GnT-VI activity, whereas those transfected with pSV-hGnT IVh or pSVK3 alone had no GnT-VI activity. Neither pSV-GnT VI-transfected nor pSV-hGnT-IVh-transfected cells showed GnT III and V activities (data not shown). These results indicate that the cloned cDNA encodes GnT VI, whereas the human GnT IV-homolog does not.
Table IIIExpression of GnT VI and human GnT IV-homologue in COS-1 cells
Expression of the GnT VI Gene in Various Chicken Tissues
Northern blot of poly(A)+ RNA from hen oviduct was hybridized with a digoxigenin-labeled DNA probe made from the GnT VI cDNA. As shown in Fig. 3, a transcript of 2.1 kilobases was observed in hen oviduct. Because we could detect GnT VI transcripts only when we used 4 μg of poly(A)+ RNA from hen oviduct, the amount of GnT VI mRNA in the tissues seemed to be very small. Therefore, we examined expression of the GnT VI gene in various chicken tissues by RT-PCR analysis. To avoid artifacts during these analyses, we performed PCR toward three parts of GnT VI cDNA and compared the results. All the data consistently showed that GnT VI mRNA was relatively highly expressed in oviduct, spleen, lung, and colon.
We have cloned a cDNA that encodes chicken GnT VI. Several lines of evidence indicate that the cloned cDNA corresponds to the GnT-VI previously purified from hen oviduct (
): (a) the predicted sequence of the protein contains all five peptides obtained from the purified enzyme protein; (b) when the cDNA was introduced into a eukaryotic expression vector and transfected into COS-1 cells, the enzyme activity was highly expressed; and (c) the characteristics of the predicted protein are consistent with those of the purified protein in terms of molecular mass and membrane localization.
Among N-acetylglucosaminyltransferases acting on the branch formation of the N-glycan core structure, GnTs I–V have been already cloned (
), we overexpressed hGnT IVh cDNA in COS-1 cells and measured various GlcNAc transferase activities. Recombinant hGnT IVh showed neither GnT IV nor GnT VI activity. In addition, hGnT IVh had no GnT III and GnT V activity, and its function remains unknown. It appears reasonable that GnT IV and VI have a similarity in primary structure, because both generate a β1,4-linked GlcNAc on a Man residue. Because the recombinant GnT VI had no GnT IV activity (present study) and GnT IV had no GnT VI activity (
), the nonhomologous domains could be important for the recognition of acceptor structures. In any event, we have detected a diverged β-4 GlcNAc transferase family. It is interesting to determine whether there are other such members. It is also of interest that only GnT III has a unique evolutionary origin among Man β-4 GlcNAc transferases.
The GnT VI gene was relatively highly expressed in hen oviduct, spleen, lung, and colon. GnT VI activity in chicken tissues was, however, reported to be high in hen oviduct, low but significant in liver and colon, and absent in heart and spleen (
). To determine whether such pentaantennary structures are really absent in mammals, more sensitive and specific assay methods (e.g. immunochemical ones) should be developed. Studies on the presence of a GnT VI gene and its expression in mammals could prove useful. Multiantennary structures generated by GnT IV and GnT V have been associated with phenotypic changes in malignant transformation (
). Our isolation of the cDNA of GnT VI enabled us to investigate the expression of this gene in various tissues of diverse species. Such studies and experimental remodeling of GnT VI expression may clarify the physiological role of highly branched N-glycans in various biological processes.
We thank Dr. Harold F. Deutsch, University of Wisconsin-Madison Medical School, for editing this manuscript.